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Golnaz Vahedi, Ph.D. - Publications

Affiliations: 
2009 Texas A & M University, College Station, TX, United States 
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44/93 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wang W, Fasolino M, Cattau B, Goldman N, Kong W, Frederick MA, McCright SJ, Kiani K, Fraietta JA, Vahedi G. Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels. Proceedings of the National Academy of Sciences of the United States of America. PMID 32094195 DOI: 10.1073/Pnas.1919259117  0.309
2019 Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, ... ... Vahedi G, et al. TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision. Immunity. PMID 31606264 DOI: 10.1016/J.Immuni.2019.09.013  0.336
2019 Vacchio MS, Ciucci T, Gao Y, Watanabe M, Balmaceno-Criss M, McGinty MT, Huang A, Xiao Q, McConkey C, Zhao Y, Shetty J, Tran B, Pepper M, Vahedi G, Jenkins MK, et al. A Thpok-Directed Transcriptional Circuitry Promotes Bcl6 and Maf Expression to Orchestrate T Follicular Helper Differentiation. Immunity. PMID 31422869 DOI: 10.1016/J.Immuni.2019.06.023  0.311
2018 Cai S, Georgakilas GK, Johnson JL, Vahedi G. A Cosine Similarity-Based Method to Infer Variability of Chromatin Accessibility at the Single-Cell Level. Frontiers in Genetics. 9: 319. PMID 30158954 DOI: 10.3389/Fgene.2018.00319  0.302
2018 Zhao YT, Kwon DY, Johnson BS, Fasolino M, Lamonica JM, Kim YJ, Zhao BS, He C, Vahedi G, Kim TH, Zhou Z. Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains. Genome Research. PMID 29848492 DOI: 10.1101/Gr.233775.117  0.32
2018 Johnson JL, Georgakilas G, Petrovic J, Kurachi M, Cai S, Harly C, Pear WS, Bhandoola A, Wherry EJ, Vahedi G. Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells. Immunity. 48: 243-257.e10. PMID 29466756 DOI: 10.1016/J.Immuni.2018.01.012  0.333
2017 Johnson BS, Zhao YT, Fasolino M, Lamonica JM, Kim YJ, Georgakilas G, Wood KH, Bu D, Cui Y, Goffin D, Vahedi G, Kim TH, Zhou Z. Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome. Nature Medicine. PMID 28920956 DOI: 10.1038/Nm.4406  0.314
2016 Poholek AC, Jankovic D, Villarino AV, Petermann F, Hettinga A, Shouval DS, Snapper SB, Kaech SM, Brooks SR, Vahedi G, Sher A, Kanno Y, O'Shea JJ. IL-10 induces a STAT3-dependent autoregulatory loop in TH2 cells that promotes Blimp-1 restriction of cell expansion via antagonism of STAT5 target genes. Science Immunology. 1. PMID 28713870 DOI: 10.1126/Sciimmunol.Aaf8612  0.326
2016 Richard AC, Peters JE, Lee JC, Vahedi G, Schäffer AA, Siegel RM, Lyons PA, Smith KG. Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network. Genome Medicine. 8: 76. PMID 27435189 DOI: 10.1186/S13073-016-0329-5  0.313
2016 Vahedi G. Regulation of T-Cell Activation and Differentiation Blood. 128. DOI: 10.1182/Blood.V128.22.Sci-11.Sci-11  0.392
2015 Paiano JJ, Johnson JL, Vahedi G. Enhancing our understanding of enhancers in T-helper cells. European Journal of Immunology. PMID 26444855 DOI: 10.1002/Eji.201546035  0.318
2015 Witte S, O'Shea JJ, Vahedi G. Super-enhancers: Asset management in immune cell genomes. Trends in Immunology. 36: 519-26. PMID 26277449 DOI: 10.1016/J.It.2015.07.005  0.311
2015 Yang XP, Jiang K, Hirahara K, Vahedi G, Afzali B, Sciume G, Bonelli M, Sun HW, Jankovic D, Kanno Y, Sartorelli V, O'Shea JJ, Laurence A. EZH2 is crucial for both differentiation of regulatory T cells and T effector cell expansion. Scientific Reports. 5: 10643. PMID 26090605 DOI: 10.1038/Srep10643  0.303
2015 Vahedi G, Kanno Y, Furumoto Y, Jiang K, Parker SC, Erdos MR, Davis SR, Roychoudhuri R, Restifo NP, Gadina M, Tang Z, Ruan Y, Collins FS, Sartorelli V, O'Shea JJ. Super-enhancers delineate disease-associated regulatory nodes in T cells. Nature. 520: 558-62. PMID 25686607 DOI: 10.1038/Nature14154  0.386
2014 Shih HY, Sciumè G, Poholek AC, Vahedi G, Hirahara K, Villarino AV, Bonelli M, Bosselut R, Kanno Y, Muljo SA, O'Shea JJ. Transcriptional and epigenetic networks of helper T and innate lymphoid cells. Immunological Reviews. 261: 23-49. PMID 25123275 DOI: 10.1111/Imr.12208  0.374
2014 Bonelli M, Shih HY, Hirahara K, Singelton K, Laurence A, Poholek A, Hand T, Mikami Y, Vahedi G, Kanno Y, O'Shea JJ. Helper T cell plasticity: impact of extrinsic and intrinsic signals on transcriptomes and epigenomes. Current Topics in Microbiology and Immunology. 381: 279-326. PMID 24831346 DOI: 10.1007/82_2014_371  0.308
2014 Nakayamada S, Poholek AC, Lu KT, Takahashi H, Kato M, Iwata S, Hirahara K, Cannons JL, Schwartzberg PL, Vahedi G, Sun HW, Kanno Y, O'Shea JJ. Type I IFN induces binding of STAT1 to Bcl6: divergent roles of STAT family transcription factors in the T follicular helper cell genetic program. Journal of Immunology (Baltimore, Md. : 1950). 192: 2156-66. PMID 24489092 DOI: 10.4049/Jimmunol.1300675  0.303
2013 Roychoudhuri R, Hirahara K, Mousavi K, Clever D, Klebanoff CA, Bonelli M, Sciumè G, Zare H, Vahedi G, Dema B, Yu Z, Liu H, Takahashi H, Rao M, Muranski P, et al. BACH2 represses effector programs to stabilize T(reg)-mediated immune homeostasis. Nature. 498: 506-10. PMID 23728300 DOI: 10.1038/Nature12199  0.331
2013 Hirahara K, Poholek A, Vahedi G, Laurence A, Kanno Y, Milner JD, O'Shea JJ. Mechanisms underlying helper T-cell plasticity: implications for immune-mediated disease. The Journal of Allergy and Clinical Immunology. 131: 1276-87. PMID 23622118 DOI: 10.1016/J.Jaci.2013.03.015  0.329
2013 Vahedi G, Kanno Y, Sartorelli V, O'Shea JJ. Transcription factors and CD4 T cells seeking identity: masters, minions, setters and spikers. Immunology. 139: 294-8. PMID 23586907 DOI: 10.1111/Imm.12113  0.307
2013 Adamson A, Ghoreschi K, Rittler M, Chen Q, Sun HW, Vahedi G, Kanno Y, Stetler-Stevenson WG, O'Shea JJ, Laurence A. Tissue inhibitor of metalloproteinase 1 is preferentially expressed in Th1 and Th17 T-helper cell subsets and is a direct STAT target gene. Plos One. 8: e59367. PMID 23555662 DOI: 10.1371/Journal.Pone.0059367  0.308
2013 Vahedi G, C Poholek A, Hand TW, Laurence A, Kanno Y, O'Shea JJ, Hirahara K. Helper T-cell identity and evolution of differential transcriptomes and epigenomes. Immunological Reviews. 252: 24-40. PMID 23405893 DOI: 10.1111/Imr.12037  0.341
2012 Vahedi G, Takahashi H, Nakayamada S, Sun HW, Sartorelli V, Kanno Y, O'Shea JJ. STATs shape the active enhancer landscape of T cell populations. Cell. 151: 981-93. PMID 23178119 DOI: 10.1016/J.Cell.2012.09.044  0.339
2012 Kanno Y, Vahedi G, Hirahara K, Singleton K, O'Shea JJ. Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity. Annual Review of Immunology. 30: 707-31. PMID 22224760 DOI: 10.1146/Annurev-Immunol-020711-075058  0.319
2011 Nakayamada S, Kanno Y, Takahashi H, Jankovic D, Lu KT, Johnson TA, Sun HW, Vahedi G, Hakim O, Handon R, Schwartzberg PL, Hager GL, O'Shea JJ. Early Th1 cell differentiation is marked by a Tfh cell-like transition. Immunity. 35: 919-31. PMID 22195747 DOI: 10.1016/J.Immuni.2011.11.012  0.319
2011 Hirahara K, Vahedi G, Ghoreschi K, Yang XP, Nakayamada S, Kanno Y, O'Shea JJ, Laurence A. Helper T-cell differentiation and plasticity: insights from epigenetics. Immunology. 134: 235-45. PMID 21977994 DOI: 10.1111/J.1365-2567.2011.03483.X  0.346
2011 O'Shea JJ, Lahesmaa R, Vahedi G, Laurence A, Kanno Y. Genomic views of STAT function in CD4+ T helper cell differentiation. Nature Reviews. Immunology. 11: 239-50. PMID 21436836 DOI: 10.1038/Nri2958  0.33
2010 Wei L, Vahedi G, Sun HW, Watford WT, Takatori H, Ramos HL, Takahashi H, Liang J, Gutierrez-Cruz G, Zang C, Peng W, O'Shea JJ, Kanno Y. Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation. Immunity. 32: 840-51. PMID 20620946 DOI: 10.1016/J.Immuni.2010.06.003  0.344
2010 Durant L, Watford WT, Ramos HL, Laurence A, Vahedi G, Wei L, Takahashi H, Sun HW, Kanno Y, Powrie F, O'Shea JJ. Diverse targets of the transcription factor STAT3 contribute to T cell pathogenicity and homeostasis. Immunity. 32: 605-15. PMID 20493732 DOI: 10.1016/J.Immuni.2010.05.003  0.328
2009 Faryabi B, Vahedi G, Datta A, Chamberland JF, Dougherty ER. Recent advances in intervention in markovian regulatory networks. Current Genomics. 10: 463-77. PMID 20436874 DOI: 10.2174/138920209789208246  0.79
2009 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Sampling-rate-dependent probabilistic Boolean networks. Journal of Theoretical Biology. 261: 540-7. PMID 19716832 DOI: 10.1016/J.Jtbi.2009.08.026  0.793
2009 Vahedi G, Ivanov IV, Dougherty ER. Inference of Boolean networks under constraint on bidirectional gene relationships. Iet Systems Biology. 3: 191-202. PMID 19449979 DOI: 10.1049/Iet-Syb.2007.0070  0.606
2009 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Intervention in context-sensitive probabilistic Boolean networks revisited. Eurasip Journal On Bioinformatics & Systems Biology. 360864. PMID 19404383 DOI: 10.1155/2009/360864  0.8
2009 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Optimal intervention strategies for cyclic therapeutic methods. Ieee Transactions On Bio-Medical Engineering. 56: 281-91. PMID 19272947 DOI: 10.1109/Tbme.2008.2003092  0.808
2009 Vahedi G, Shmulevich I, Liu W, Dougherty E. Critical boolean networks require minimal intervention rate 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174341  0.6
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Intervention in gene regulatory networks via a stationary mean-first-passage-time control policy. Ieee Transactions On Bio-Medical Engineering. 55: 2319-31. PMID 18838357 DOI: 10.1109/Tbme.2008.925677  0.802
2008 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Optimal constrained stationary intervention in gene regulatory networks. Eurasip Journal On Bioinformatics & Systems Biology. 620767. PMID 18516276 DOI: 10.1155/2008/620767  0.808
2008 Faryabi B, Chamberland JF, Vahedi G, Datta A, Dougherty ER. Optimal intervention in asynchronous genetic regulatory networks Ieee Journal On Selected Topics in Signal Processing. 2: 412-423. DOI: 10.1109/Jstsp.2008.923853  0.82
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty E. Modeling cyclic therapy in gene regulatory networks Gensips'08 - 6th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2008.4555670  0.775
2008 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Constrained intervention in a cancerous mammalian cell cycle network Gensips'08 - 6th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2008.4555669  0.784
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Mean first-passage time control policy versus reinforcement-learning control policy in gene regulatory networks Proceedings of the American Control Conference. 1394-1399. DOI: 10.1109/ACC.2008.4586687  0.763
2008 Faryabi B, Chamberland JF, Vahedi G, Datta A, Dougherty ER. Optimal intervention in semi-Markov-based asynchronous genetic regulatory networks Proceedings of the American Control Conference. 1388-1393. DOI: 10.1109/ACC.2008.4586686  0.798
2007 Vahedi G, Datta A, Dougherty ER. Which control gene should be used in genetic regulatory networks? Ieee Workshop On Statistical Signal Processing Proceedings. 6-10. DOI: 10.1109/SSP.2007.4301207  0.593
2007 Vahedi G, Ivanov I, Dougherty ER. Bidirectional relationships and attractor structure of Boolean networks Gensips'07 - 5th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2007.4365822  0.345
Low-probability matches (unlikely to be authored by this person)
2016 Pauken KE, Sammons MA, Odorizzi PM, Manne SK, Godec J, Khan O, Sen D, Kurachi M, Barnitz RA, Bengsch B, Huang AC, Schenkel JM, Vahedi G, Haining WN, Berger SL, et al. Abstract B104: Impact of PD-1 blockade on epigenetic and transcriptional reprogramming of exhausted T cells Cancer Immunology Research. 4. DOI: 10.1158/2326-6066.Imm2016-B104  0.293
2019 Petrovic J, Zhou Y, Fasolino M, Goldman N, Schwartz GW, Mumbach MR, Nguyen SC, Rome KS, Sela Y, Zapataro Z, Blacklow SC, Kruhlak MJ, Shi J, Aster JC, Joyce EF, ... ... Vahedi G, et al. Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques. Molecular Cell. PMID 30745086 DOI: 10.1016/J.Molcel.2019.01.006  0.29
2017 Johnson JL, Vahedi G. Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment? Epigenome: A Dynamic Vehicle for Transmitting and Recording Cytokine Signaling. Cold Spring Harbor Perspectives in Biology. PMID 28432132 DOI: 10.1101/Cshperspect.A028779  0.288
2015 Jain R, Chen Y, Kanno Y, Joyce-Shaikh B, Vahedi G, Hirahara K, Blumenschein WM, Sukumar S, Haines CJ, Sadekova S, McClanahan TK, McGeachy MJ, O'Shea JJ, Cua DJ. Interleukin-23-Induced Transcription Factor Blimp-1 Promotes Pathogenicity of T Helper 17 Cells. Immunity. PMID 26750311 DOI: 10.1016/J.Immuni.2015.11.009  0.288
2020 Fasolino M, Goldman N, Wang W, Cattau B, Zhou Y, Petrovic J, Link VM, Cote A, Chandra A, Silverman M, Joyce EF, Little SC, Kaestner KH, Naji A, ... ... Vahedi G, et al. Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression. Immunity. PMID 32049053 DOI: 10.1016/J.Immuni.2020.01.003  0.287
2012 Sciumé G, Hirahara K, Takahashi H, Laurence A, Villarino AV, Singleton KL, Spencer SP, Wilhelm C, Poholek AC, Vahedi G, Kanno Y, Belkaid Y, O'Shea JJ. Distinct requirements for T-bet in gut innate lymphoid cells. The Journal of Experimental Medicine. 209: 2331-8. PMID 23209316 DOI: 10.1084/Jem.20122097  0.28
2008 Ivanov I, Vahedi G, Dougherty E. Constrained reduction mapping for a class of network models of genomic regulation 2007 Ieee/Nih Life Science Systems and Applications Workshop, Lisa. 192-195. DOI: 10.1109/LSSA.2007.4400917  0.274
2012 Hirahara K, Ghoreschi K, Yang XP, Takahashi H, Laurence A, Vahedi G, Sciumè G, Hall AO, Dupont CD, Francisco LM, Chen Q, Tanaka M, Kanno Y, Sun HW, Sharpe AH, et al. Interleukin-27 priming of T cells controls IL-17 production in trans via induction of the ligand PD-L1. Immunity. 36: 1017-30. PMID 22726954 DOI: 10.1016/J.Immuni.2012.03.024  0.274
2014 Steward-Tharp SM, Laurence A, Kanno Y, Kotlyar A, Villarino AV, Sciume G, Kuchen S, Resch W, Wohlfert EA, Jiang K, Hirahara K, Vahedi G, Sun HW, Feigenbaum L, Milner JD, et al. A mouse model of HIES reveals pro- and anti-inflammatory functions of STAT3. Blood. 123: 2978-87. PMID 24632714 DOI: 10.1182/Blood-2013-09-523167  0.273
2015 Hirahara K, Onodera A, Villarino AV, Bonelli M, Sciumè G, Laurence A, Sun HW, Brooks SR, Vahedi G, Shih HY, Gutierrez-Cruz G, Iwata S, Suzuki R, Mikami Y, Okamoto Y, et al. Asymmetric Action of STAT Transcription Factors Drives Transcriptional Outputs and Cytokine Specificity. Immunity. 42: 877-89. PMID 25992861 DOI: 10.1016/J.Immuni.2015.04.014  0.273
2018 Buggert M, Nguyen S, Salgado-Montes de Oca G, Bengsch B, Darko S, Ransier A, Roberts ER, Del Alcazar D, Brody IB, Vella LA, Beura L, Wijeyesinghe S, Herati RS, Del Rio Estrada PM, Ablanedo-Terrazas Y, ... ... Vahedi G, et al. Identification and characterization of HIV-specific resident memory CD8 T cells in human lymphoid tissue. Science Immunology. 3. PMID 29858286 DOI: 10.1126/Sciimmunol.Aar4526  0.265
2017 Vahedi G. Pioneer factors in T cells Experimental Hematology. 53. DOI: 10.1016/J.Exphem.2017.06.036  0.259
2016 Pauken KE, Sammons MA, Odorizzi PM, Manne S, Godec J, Khan O, Drake AM, Chen Z, Sen D, Kurachi M, Barnitz RA, Bartman C, Bengsch B, Huang AC, Schenkel JM, ... Vahedi G, et al. Epigenetic stability of exhausted T cells limits durability of reinvigoration by PD-1 blockade. Science (New York, N.Y.). PMID 27789795 DOI: 10.1126/Science.Aaf2807  0.258
2014 Kanno T, Kanno Y, LeRoy G, Campos E, Sun HW, Brooks SR, Vahedi G, Heightman TD, Garcia BA, Reinberg D, Siebenlist U, O'Shea JJ, Ozato K. BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones. Nature Structural & Molecular Biology. 21: 1047-57. PMID 25383670 DOI: 10.1038/Nsmb.2912  0.257
2011 Yang XP, Ghoreschi K, Steward-Tharp SM, Rodriguez-Canales J, Zhu J, Grainger JR, Hirahara K, Sun HW, Wei L, Vahedi G, Kanno Y, O'Shea JJ, Laurence A. Opposing regulation of the locus encoding IL-17 through direct, reciprocal actions of STAT3 and STAT5. Nature Immunology. 12: 247-54. PMID 21278738 DOI: 10.1038/Ni.1995  0.248
2019 Sidoli S, Lopes M, Lund PJ, Goldman N, Fasolino M, Coradin M, Kulej K, Bhanu NV, Vahedi G, Garcia BA. A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins. Scientific Reports. 9: 13613. PMID 31541121 DOI: 10.1038/S41598-019-49894-4  0.247
2016 Johnson JL, Vahedi G. Exploiting Chromatin Biology to Understand Immunology. Methods in Enzymology. 574: 365-383. PMID 27423869 DOI: 10.1016/Bs.Mie.2016.03.016  0.245
2020 Schwartz GW, Zhou Y, Petrovic J, Fasolino M, Xu L, Shaffer SM, Pear WS, Vahedi G, Faryabi RB. TooManyCells identifies and visualizes relationships of single-cell clades. Nature Methods. PMID 32123397 DOI: 10.1038/S41592-020-0748-5  0.24
2014 Vahedi G, Richard AC, O'Shea JJ. Enhancing the understanding of asthma. Nature Immunology. 15: 701-3. PMID 25045871 DOI: 10.1038/Ni.2946  0.237
2023 Wang L, Donahue G, Zhang C, Havas A, Lei X, Xu C, Wang W, Vahedi G, Adams PD, Berger SL. Dynamic enhancer interactome promotes senescence and aging. Biorxiv : the Preprint Server For Biology. PMID 37292952 DOI: 10.1101/2023.05.22.541769  0.229
2017 Fasolino M, Vahedi G. GR Extinguishes Inflamed Chromatin, and NF-κB Evacuates. Immunity. 47: 214-216. PMID 28813652 DOI: 10.1016/J.Immuni.2017.07.025  0.222
2023 Chandra A, Yoon S, Michieletto MF, Goldman N, Ferrari EK, Abedi M, Johnson I, Fasolino M, Pham K, Joannas L, Kee BL, Henao-Mejia J, Vahedi G. Quantitative control of Ets1 dosage by a multi-enhancer hub promotes Th1 cell differentiation and protects from allergic inflammation. Immunity. PMID 37263273 DOI: 10.1016/j.immuni.2023.05.004  0.22
2004 Vahedi G, Kaler K, Backhouse CJ. An integrated method for mutation detection using on-chip sample preparation, single-stranded conformation polymorphism, and heteroduplex analysis. Electrophoresis. 25: 2346-56. PMID 15274017 DOI: 10.1002/Elps.200405957  0.197
2023 Goldman N, Chandra A, Johnson I, Sullivan MA, Patil AR, Vanderbeck A, Jay A, Zhou Y, Ferrari EK, Mayne L, Aguilan J, Xue HH, Faryabi RB, John Wherry E, Sidoli S, ... ... Vahedi G, et al. Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity. Nature Immunology. PMID 37592014 DOI: 10.1038/s41590-023-01599-7  0.197
2022 Yoon S, Chandra A, Vahedi G. Stripenn detects architectural stripes from chromatin conformation data using computer vision. Nature Communications. 13: 1602. PMID 35332165 DOI: 10.1038/s41467-022-29258-9  0.191
2022 Wang W, Chandra A, Goldman N, Yoon S, Ferrari EK, Nguyen SC, Joyce EF, Vahedi G. TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors. Nature Immunology. PMID 35726060 DOI: 10.1038/s41590-022-01232-z  0.19
2020 Chandra A, Goldman N, Vahedi G. Foxp3 Re-distributes Its Heavy Lifting. Immunity. 53: 895-897. PMID 33207211 DOI: 10.1016/j.immuni.2020.10.021  0.178
2021 Park J, Lucas AM, Zhang X, Chaudhary K, Cho JH, Nadkarni G, Dobbyn A, Chittoor G, Josyula NS, Katz N, Breeyear JH, Ahmadmehrabi S, Drivas TG, Chavali VRM, Fasolino M, ... ... Vahedi G, et al. Exome-wide evaluation of rare coding variants using electronic health records identifies new gene-phenotype associations. Nature Medicine. PMID 33432171 DOI: 10.1038/s41591-020-1133-8  0.171
2021 Abdel-Hakeem MS, Manne S, Beltra JC, Stelekati E, Chen Z, Nzingha K, Ali MA, Johnson JL, Giles JR, Mathew D, Greenplate AR, Vahedi G, Wherry EJ. Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation. Nature Immunology. 22: 1008-1019. PMID 34312545 DOI: 10.1038/s41590-021-00975-5  0.165
2023 Mongia A, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW, Faryabi RB. AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics. Biorxiv : the Preprint Server For Biology. PMID 36712052 DOI: 10.1101/2023.01.15.524135  0.161
2021 Kong W, Dimitri A, Wang W, Jung IY, Ott CJ, Fasolino M, Wang Y, Kulikovskaya I, Gupta M, Yoder T, DeNizio JE, Everett JK, Williams EF, Xu J, Scholler J, ... ... Vahedi G, et al. BET bromodomain protein inhibition reverses chimeric antigen receptor extinction and reinvigorates exhausted T cells in chronic lymphocytic leukemia. The Journal of Clinical Investigation. 131. PMID 34396987 DOI: 10.1172/JCI145459  0.157
2020 Buggert M, Vella LA, Nguyen S, Wu VH, Chen Z, Sekine T, Perez-Potti A, Maldini CR, Manne S, Darko S, Ransier A, Kuri-Cervantes L, Japp AS, Brody IB, Ivarsson MA, ... ... Vahedi G, et al. The Identity of Human Tissue-Emigrant CD8 T Cells. Cell. PMID 33306960 DOI: 10.1016/j.cell.2020.11.019  0.152
2022 Michieletto MF, Tello-Cajiao JJ, Mowel WK, Chandra A, Yoon S, Joannas L, Clark ML, Jimenez MT, Wright JM, Lundgren P, Williams A, Thaiss CA, Vahedi G, Henao-Mejia J. Multiscale 3D genome organization underlies ILC2 ontogenesis and allergic airway inflammation. Nature Immunology. PMID 36050414 DOI: 10.1038/s41590-022-01295-y  0.142
2022 Fasolino M, Schwartz GW, Patil AR, Mongia A, Golson ML, Wang YJ, Morgan A, Liu C, Schug J, Liu J, Wu M, Traum D, Kondo A, May CL, Goldman N, ... ... Vahedi G, et al. Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes. Nature Metabolism. 4: 284-299. PMID 35228745 DOI: 10.1038/s42255-022-00531-x  0.138
2022 Gilbertson SE, Walter HC, Gardner K, Wren SN, Vahedi G, Weinmann AS. Topologically associating domains are disrupted by evolutionary genome rearrangements forming species-specific enhancer connections in mice and humans. Cell Reports. 39: 110769. PMID 35508135 DOI: 10.1016/j.celrep.2022.110769  0.124
2023 Park DS, Nguyen SC, Isenhart R, Shah PP, Kim W, Barnett RJ, Chandra A, Luppino JM, Harke J, Wai M, Walsh PJ, Abdill RJ, Yang R, Lan Y, Yoon S, ... ... Vahedi G, et al. High-throughput Oligopaint screen identifies druggable 3D genome regulators. Nature. PMID 37438531 DOI: 10.1038/s41586-023-06340-w  0.124
2021 Vahedi G. Remodeling the chromatin landscape in T lymphocytes by a division of labor among transcription factors. Immunological Reviews. PMID 33452686 DOI: 10.1111/imr.12942  0.122
2021 Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, ... ... Vahedi G, et al. BRD4 orchestrates genome folding to promote neural crest differentiation. Nature Genetics. 53: 1480-1492. PMID 34611363 DOI: 10.1038/s41588-021-00934-8  0.116
2021 Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, ... ... Vahedi G, et al. Publisher Correction: BRD4 orchestrates genome folding to promote neural crest differentiation. Nature Genetics. PMID 34725478 DOI: 10.1038/s41588-021-00980-2  0.101
2020 Coate KC, Cha J, Shrestha S, Wang W, Gonçalves LM, Almaça J, Kapp ME, Fasolino M, Morgan A, Dai C, Saunders DC, Bottino R, Aramandla R, Jenkins R, Stein R, ... ... Vahedi G, et al. SARS-CoV-2 Cell Entry Factors ACE2 and TMPRSS2 are Expressed in the Pancreas but are Not Enriched in Islet Endocrine Cells. Biorxiv : the Preprint Server For Biology. PMID 33106804 DOI: 10.1101/2020.08.31.275719  0.099
2021 Abdel-Hakeem MS, Manne S, Beltra JC, Stelekati E, Chen Z, Nzingha K, Ali MA, Johnson JL, Giles JR, Mathew D, Greenplate AR, Vahedi G, Wherry EJ. Author Correction: Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation. Nature Immunology. PMID 34588688 DOI: 10.1038/s41590-021-01057-2  0.099
2021 Goldman N, Chandra A, Vahedi G. Transcription factors combine to paint the methylation landscape. Trends in Immunology. PMID 34772620 DOI: 10.1016/j.it.2021.10.011  0.094
2023 Patil AR, Schug J, Naji A, Kaestner KH, Faryabi RB, Vahedi G. Single-cell expression profiling of islets generated by the Human Pancreas Analysis Program. Nature Metabolism. PMID 37188822 DOI: 10.1038/s42255-023-00806-x  0.087
2020 Coate KC, Cha J, Shrestha S, Wang W, Gonçalves LM, Almaça J, Kapp ME, Fasolino M, Morgan A, Dai C, Saunders DC, Bottino R, Aramandla R, Jenkins R, Stein R, ... ... Vahedi G, et al. SARS-CoV-2 Cell Entry Factors ACE2 and TMPRSS2 Are Expressed in the Microvasculature and Ducts of Human Pancreas but Are Not Enriched in β Cells. Cell Metabolism. PMID 33207245 DOI: 10.1016/j.cmet.2020.11.006  0.086
2022 Doliba NM, Rozo AV, Roman J, Qin W, Traum D, Gao L, Liu J, Manduchi E, Liu C, Golson ML, Vahedi G, Naji A, Matschinsky FM, Atkinson MA, Powers AC, et al. α Cell dysfunction in islets from nondiabetic, glutamic acid decarboxylase autoantibody-positive individuals. The Journal of Clinical Investigation. 132. PMID 35642629 DOI: 10.1172/JCI156243  0.084
2023 Patil AR, Schug J, Naji A, Kaestner KH, Faryabi RB, Vahedi G. Computational workflow and interactive analysis of single-cell expression profiling of islets generated by the Human Pancreas Analysis Program. Biorxiv : the Preprint Server For Biology. PMID 36711819 DOI: 10.1101/2023.01.03.522578  0.077
2023 Vahedi G, Oltz EM. Systems Approaches for Studying Immunity. Journal of Immunology (Baltimore, Md. : 1950). 210: 843-844. PMID 36947825 DOI: 10.4049/jimmunol.2300097  0.042
2011 Vahedi G, Taghavi M, Maleki AK, Habibian R. The effect of Aloe vera extract on humoral and cellular immune response in rabbit African Journal of Biotechnology. 10: 5225-5228.  0.04
2016 Khosravi AR, Shokri H, Vahedi G. Factors in Etiology and Predisposition of Adult Tinea Capitis and Review of Published Literature Mycopathologia. 1-8. DOI: 10.1007/s11046-016-0004-9  0.025
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