Qifang Xu, Ph.D. - Publications

Affiliations: 
2008 Computer and Information Science Temple University, Philadelphia, PA, United States 

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kueppers F, Andrake MD, Xu Q, Dunbrack RL, Kim J, Sanders CL. Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency. Bmc Medical Genetics. 20: 125. PMID 31307431 DOI: 10.1186/s12881-019-0852-5  0.96
2019 Xu Q, Dunbrack RL. Principles and characteristics of biological assemblies in experimentally determined protein structures. Current Opinion in Structural Biology. 55: 34-49. PMID 30965224 DOI: 10.1016/j.sbi.2019.03.006  0.96
2017 Deihimi S, Lev A, Slifker M, Shagisultanova E, Xu Q, Jung K, Vijayvergia N, Ross EA, Xiu J, Swensen J, Gatalica Z, Andrake M, Dunbrack RL, El-Deiry WS. BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations. Oncotarget. PMID 28591715 DOI: 10.18632/oncotarget.18098  0.96
2017 Carraro M, Minervini G, Giollo M, Bromberg Y, Capriotti E, Casadio R, Dunbrack R, Elefanti L, Fariselli P, Ferrari C, Gough J, Katsonis P, Leonardi E, Lichtarge O, Menin C, ... ... Xu Q, et al. Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI. Human Mutation. PMID 28440912 DOI: 10.1002/humu.23235  0.36
2017 Xu Q, Tang Q, Katsonis P, Lichtarge O, Jones D, Bovo S, Babbi G, Martelli PL, Casadio R, Lee GR, Seok C, Fenton AW, Dunbrack RL. Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4. Human Mutation. PMID 28370845 DOI: 10.1002/humu.23222  0.96
2016 Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL. Biological function derived from predicted structures in CASP11. Proteins. PMID 27181425 DOI: 10.1002/prot.24997  0.96
2016 Modi V, Xu Q, Adhikari S, Dunbrack RL. Assessment of template-based modeling of protein structure in CASP11. Proteins. PMID 27081927 DOI: 10.1002/prot.25049  0.56
2016 Xu Q, Chen J, Ni S, Tan C, Xu M, Dong L, Yuan L, Wang Q, Du X. Pan-cancer transcriptome analysis reveals a gene expression signature for the identification of tumor tissue origin. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. PMID 26990976 DOI: 10.1038/modpathol.2016.60  0.56
2016 Bailey P, Chang DK, Nones K, Johns AL, Patch AM, Gingras MC, Miller DK, Christ AN, Bruxner TJ, Quinn MC, Nourse C, Murtaugh LC, Harliwong I, Idrisoglu S, Manning S, ... ... Xu Q, et al. Genomic analyses identify molecular subtypes of pancreatic cancer. Nature. PMID 26909576 DOI: 10.1038/nature16965  0.52
2016 Xu X, Xu Q, Huang Y, Hu X, Wang G, Zhuang N. Control of crystal phase and morphology in hydrothermal synthesis of BiFeO3 crystal Journal of Crystal Growth. 437: 42-48. DOI: 10.1016/j.jcrysgro.2015.12.015  0.68
2015 Huang B, Deng C, Yang T, Xue L, Wang Q, Huang S, Su XZ, Liu Y, Zheng S, Guan Y, Xu Q, Zhou J, Yuan J, Bacar A, Abdallah KS, et al. Polymorphisms of the artemisinin resistant marker (K13) in Plasmodium falciparum parasite populations of Grande Comore Island 10 years after artemisinin combination therapy. Parasites & Vectors. 8: 634. PMID 26667053 DOI: 10.1186/s13071-015-1253-z  0.56
2015 Du J, Cao Y, Wang Q, Zhang N, Liu X, Chen D, Liu X, Xu Q, Ma W. Unique subcellular distribution of phosphorylated Plk1 (Ser137 and Thr210) in mouse oocytes during meiotic division and pPlk1(Ser137) involvement in spindle formation and REC8 cleavage. Cell Cycle (Georgetown, Tex.). 14: 3566-3579. PMID 26654596 DOI: 10.1080/15384101.2015.1100770  0.56
2015 Xu Q, Malecka KL, Fink L, Jordan EJ, Duffy E, Kolander S, Peterson JR, Dunbrack RL. Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases. Science Signaling. 8: rs13. PMID 26628682 DOI: 10.1126/scisignal.aaa6711  0.56
2015 Han Z, Zhang T, Xu Q, Gao M, Chen Y, Wang Q, Zhao Y, Shao Y, Li H, Kong X, Liu S. Altered pathogenicity of a tl/CH/LDT3/03 genotype infectious bronchitis coronavirus due to natural recombination in the 5'- 17kb region of the genome. Virus Research. PMID 26616599 DOI: 10.1016/j.virusres.2015.11.021  0.56
2015 Wang Q, Zhao G, Lin J, Li C, Jiang N, Xu Q, Wang Q, Zhang J. Role of the Mannose Receptor During Aspergillus fumigatus Infection and Interaction With Dectin-1 in Corneal Epithelial Cells. Cornea. PMID 26606296 DOI: 10.1097/ICO.0000000000000710  0.56
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... Xu QJ, ... Xu QN, et al. Observation of a Neutral Charmoniumlike State Z_{c}(4025)^{0} in e^{+}e^{-}→(D^{*}D[over ¯]^{*})^{0}π^{0}. Physical Review Letters. 115: 182002. PMID 26565461 DOI: 10.1103/PhysRevLett.115.182002  0.48
2015 Du ZD, Hu LT, Zhao GQ, Wang Q, Xu Q, Jiang N, Lin J. Protein tyrosine phosphatase 1B regulates migration of ARPE-19 cells through EGFR/ERK signaling pathway. International Journal of Ophthalmology. 8: 891-7. PMID 26558197 DOI: 10.3980/j.issn.2222-3959.2015.05.07  0.56
2015 Xu Q, Han Z, Wang Q, Zhang T, Gao M, Zhao Y, Shao Y, Li H, Kong X, Liu S. Emergence of Novel Nephropathogenic Infectious Bronchitis Viruses Currently Circulating in Chinese Chicken Flocks. Avian Pathology : Journal of the W.V.P.A. 1-37. PMID 26551660 DOI: 10.1080/03079457.2015.1118435  0.56
2015 Wu X, Zhao G, Lin J, Jiang N, Li C, Hu L, Peng X, Xu Q, Wang Q, Li H, Zhang Y. The production mechanism and immunosuppression effect of pulmonary surfactant protein D via toll like receptor 4 signaling pathway in human corneal epithelial cells during Aspergillus fumigatus infection. International Immunopharmacology. PMID 26507163 DOI: 10.1016/j.intimp.2015.10.018  0.56
2015 Yang Z, Zhang J, Lu Y, Xu Q, Tang B, Wang Q, Zhang W, Chen S, Lu L, Chen X. Aspartate aminotransferase-lymphocyte ratio index and systemic immune-inflammation index predict overall survival in HBV-related hepatocellular carcinoma patients after transcatheter arterial chemoembolization. Oncotarget. PMID 26506519 DOI: 10.18632/oncotarget.5719  0.56
2015 Xu Q, Zhao G, Lin J, Wang Q, Hu L, Jiang Z. Role of Dectin-1 in the innate immune response of rat corneal epithelial cells to Aspergillus fumigatus. Bmc Ophthalmology. 15: 126. PMID 26427623 DOI: 10.1186/s12886-015-0112-1  0.56
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... Xu QJ, ... Xu QN, et al. Observation of Z_{c}(3900)^{0} in e^{+}e^{-}→π^{0}π^{0}J/ψ. Physical Review Letters. 115: 112003. PMID 26406823 DOI: 10.1103/PhysRevLett.115.112003  0.48
2015 Wang G, Xiong Y, Xu Q, Yin J, Hao Y. Complete genome sequence of Lactobacillus paracasei CAUH35, a new strain isolated from traditional fermented dairy product koumiss in China. Journal of Biotechnology. PMID 26393953 DOI: 10.1016/j.jbiotec.2015.09.019  0.68
2015 Adolf-Bryfogle J, Xu Q, North B, Lehmann A, Dunbrack RL. PyIgClassify: a database of antibody CDR structural classifications. Nucleic Acids Research. 43: D432-8. PMID 25392411 DOI: 10.1093/nar/gku1106  0.56
2014 Shapovalov MV, Wang Q, Xu Q, Andrake M, Dunbrack RL. BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers. Plos One. 9: e98309. PMID 24922057 DOI: 10.1371/journal.pone.0098309  0.96
2013 Wei Q, Xu Q, Dunbrack RL. Prediction of phenotypes of missense mutations in human proteins from biological assemblies. Proteins. 81: 199-213. PMID 22965855 DOI: 10.1002/prot.24176  0.96
2012 Xu Q, Dunbrack RL. Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB. Bioinformatics (Oxford, England). 28: 2763-72. PMID 22942020 DOI: 10.1093/bioinformatics/bts533  0.96
2011 Xu Q, Dunbrack RL. The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms. Nucleic Acids Research. 39: D761-70. PMID 21036862 DOI: 10.1093/nar/gkq1059  0.96
2009 Weitzner B, Meehan T, Xu Q, Dunbrack RL. An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases. Proteins. 75: 289-95. PMID 19173308 DOI: 10.1002/prot.22347  0.56
2008 Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL. Statistical analysis of interface similarity in crystals of homologous proteins. Journal of Molecular Biology. 381: 487-507. PMID 18599072 DOI: 10.1016/j.jmb.2008.06.002  0.96
2006 Xu Q, Canutescu A, Obradovic Z, Dunbrack RL. ProtBuD: a database of biological unit structures of protein families and superfamilies. Bioinformatics (Oxford, England). 22: 2876-82. PMID 17018535 DOI: 10.1093/bioinformatics/btl490  0.96
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