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Neil Moore, Ph.D. - Publications

Affiliations: 
2012 Computer Science University of Kentucky, Lexington, KY 
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tapia AC, Jaromczyk JW, Moore N, Schardl CL. RNA-clique: a method for computing genetic distances from RNA-seq data. Bmc Bioinformatics. 25: 205. PMID 38834962 DOI: 10.1186/s12859-024-05811-9  0.665
2018 Kang Q, Schardl CW, Moore N, Yoshida R. CURatio: Genome-wide phylogenomic analysis method using ratios of total branch lengths. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30387738 DOI: 10.1109/Tcbb.2018.2878564  0.44
2017 Cook D, Donzelli BG, Creamer R, Baucom DL, Gardner DR, Pan J, Moore N, Jaromczyk JW, Schardl CL. Swainsonine Biosynthesis Genes in Diverse Symbiotic and Pathogenic Fungi. G3 (Bethesda, Md.). PMID 28381497 DOI: 10.1534/G3.117.041384  0.696
2017 Buiate EA, Xavier KV, Moore N, Torres MF, Farman ML, Schardl CL, Vaillancourt LJ. A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola. Bmc Genomics. 18: 67. PMID 28073340 DOI: 10.1186/S12864-016-3457-9  0.378
2017 Rouchka EC, Chariker JH, Tieri DA, Park JW, Rajurkar S, Singh V, Verma NK, Cui Y, Farman M, Condon B, Moore N, Jaromczyk J, Jaromczyk J, Harris D, Calie P, ... ... Moore N, et al. Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics Bmc Bioinformatics. 18. DOI: 10.1186/S12859-017-1781-Y  0.626
2016 Rouchka EC, Chariker JH, Harrison BJ, Park JW, Cao X, Pounds S, Raimondi S, Downing J, Ribeiro R, Rubnitz J, Lamba J, Daigle BJ, Burgess D, Gehrlich S, Carmen JC, ... ... Moore N, et al. Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 Bmc Bioinformatics. 17: 297. PMID 28166713 DOI: 10.1186/S12859-016-1154-Y  0.681
2015 Young CA, Schardl CL, Panaccione DG, Florea S, Takach JE, Charlton ND, Moore N, Webb JS, Jaromczyk J. Genetics, genomics and evolution of ergot alkaloid diversity. Toxins. 7: 1273-302. PMID 25875294 DOI: 10.3390/Toxins7041273  0.396
2015 Chui R, Jaromczyk JW, Moore N, Schardl CL. Validation and quality assurance for genome browser database exports Bmc Bioinformatics. 16. DOI: 10.1186/1471-2105-16-S15-P13  0.7
2014 Farman M, Calie P, Jaromczyk J, Moore N, Harris D, Schardl C. An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis Bmc Bioinformatics. 15. DOI: 10.1186/1471-2105-15-S10-P25  0.684
2014 Moore N, Jaromczyk JW, Schardl CL, Hill J, Wright D. Automating deployment of several GBrowse instances Bmc Bioinformatics. 15. DOI: 10.1186/1471-2105-15-S10-P2  0.703
2014 Fahrbach M, Jaromczyk JW, David Mobley R, Moore N. Video game bots as a theme for student software competitions Proceedings of Cgames 2014 Usa - 19th International Conference On Computer Games: Ai, Animation, Mobile, Interactive Multimedia, Educational and Serious Games. 134-137. DOI: 10.1109/CGames.2014.6934158  0.604
2014 Schardl CL, Young CA, Moore N, Krom N, Dupont PY, Pan J, Florea S, Webb JS, Jaromczyk J, Jaromczyk JW, Cox MP, Farman ML. Genomes of plant-associated clavicipitaceae Advances in Botanical Research. 70: 291-327. DOI: 10.1016/B978-0-12-397940-7.00010-0  0.675
2013 Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, et al. Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. Plos Genetics. 9: e1003323. PMID 23468653 DOI: 10.1371/Journal.Pgen.1003323  0.698
2013 Parke T, Farman M, Farnsworth E, Fox D, Jaromczyk JW, Jaromczyk J, Moore N, Schardl CL, Yoshida R, Calie P. Using HPC for teaching and learning bioinformatics software: Benefits and challenges Bmc Bioinformatics. 14. DOI: 10.1186/1471-2105-14-S17-A18  0.689
2013 Chui R, Jaromczyk JW, Moore N, Schardl CL. FPD2GB2: Automating a transition from a customized genome browser to GBrowse2 Bmc Bioinformatics. 14. DOI: 10.1186/1471-2105-14-S17-A17  0.713
2012 Jaromczyk JW, Moore N, Schardl CL. A linear-time algorithm for finding a maximum-length ORF in a splice graph. International Journal of Computational Biology and Drug Design. 5: 284-97. PMID 23013654 DOI: 10.1504/Ijcbdd.2012.049212  0.664
2012 O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate EA, Epstein L, Alkan N, Altmüller J, Alvarado-Balderrama L, Bauser CA, Becker C, Birren BW, ... ... Moore N, et al. Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nature Genetics. 44: 1060-5. PMID 22885923 DOI: 10.1038/Ng.2372  0.371
2012 Moore N, Jaromczyk JW, Schardl CL. Finding long protein products of alternatively spliced genes Bmc Bioinformatics. 13: A12. DOI: 10.1186/1471-2105-13-S12-A12  0.66
2011 Moore N, Jaromczyk JW. Finding a longest open reading frame of an alternatively spliced gene 2011 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2011. 215-222. DOI: 10.1109/BIBMW.2011.6112377  0.653
2010 Arnaoudova E, Haws DC, Huggins P, Jaromczyk JW, Moore N, Schardl CL, Yoshida R. Statistical phylogenetic tree analysis using differences of means. Frontiers in Neuroscience. 4. PMID 20802801 DOI: 10.7490/F1000Research.253.1  0.689
2010 Arnaoudova E, Jaromczyk JW, Moore N, Schardl CL, Yoshida R. Phylotree – a toolkit for computing experiments with distance-based methods for genome coevolution Bmc Bioinformatics. 11. DOI: 10.1186/1471-2105-11-S4-P6  0.701
2009 Arnaoudova EG, Bowens PJ, Chui RG, Dinkins RD, Hesse U, Jaromczyk JW, Martin M, Maynard P, Moore N, Schardl CL. Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports Bmc Bioinformatics. 10: A4. DOI: 10.1186/1471-2105-10-S7-A4  0.703
2006 Dekhtyar A, Iacob IE, Jaromczyk JW, Kiernan K, Moore N, Porter DC. Support for XML markup of image-based electronic editions International Journal On Digital Libraries. 6: 55-69. DOI: 10.1007/S00799-005-0123-2  0.653
2005 Dekhtyar A, Iacob IE, Jaromczyk J, Kiernan K, Moore N, Porter DC. Building image-based Electronic Editions using the edition Production Technology Proceedings of the Acm/Ieee Joint Conference On Digital Libraries. 406.  0.621
2004 Jaromczyk JW, Kowaluk M, Moore N. A web interface to image-based concurrent markup using image maps Proceedings of the Interntational Workshop On Web Information and Data Management. 152-159.  0.613
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