Liliana D. Florea, Ph.D. - Publications

2000 Pennsylvania State University, State College, PA, United States 

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Wang Z, Ceniccola K, Florea L, Wang BD, Lee NH, Kumar A. Viral non-coding RNA inhibits HNF4α expression in HCV associated hepatocellular carcinoma. Infectious Agents and Cancer. 10: 19. PMID 26157476 DOI: 10.1186/S13027-015-0014-0  0.36
2013 Florea LD, Salzberg SL. Genome-guided transcriptome assembly in the age of next-generation sequencing. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 1234-40. PMID 24524156 DOI: 10.1109/Tcbb.2013.140  0.36
2013 Eswaran J, Horvath A, Godbole S, Reddy SD, Mudvari P, Ohshiro K, Cyanam D, Nair S, Fuqua SA, Polyak K, Florea LD, Kumar R. RNA sequencing of cancer reveals novel splicing alterations. Scientific Reports. 3: 1689. PMID 23604310 DOI: 10.1038/Srep01689  0.36
2013 Florea L, Song L, Salzberg SL. Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues F1000research. 2. DOI: 10.12688/f1000research.2-188.v2  0.36
2011 Florea L, Souvorov A, Kalbfleisch TS, Salzberg SL. Genome assembly has a major impact on gene content: A comparison of annotation in two bos Taurus assemblies Plos One. 6. PMID 21731731 DOI: 10.1371/Journal.Pone.0021400  0.36
2011 Banaudha K, Kaliszewski M, Korolnek T, Florea L, Yeung ML, Jeang KT, Kumar A. MicroRNA silencing of tumor suppressor DLC-1 promotes efficient hepatitis C virus replication in primary human hepatocytes. Hepatology (Baltimore, Md.). 53: 53-61. PMID 20967756 DOI: 10.1002/Hep.24016  0.36
2010 Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, ... ... Florea L, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475  0.36
2009 Buckley KM, Florea LD, Smith LC. A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups. Bmc Genomics. 10: 318. PMID 19607703 DOI: 10.1186/1471-2164-10-318  0.36
2009 Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology. 10: R42. PMID 19393038 DOI: 10.1186/Gb-2009-10-4-R42  0.36
2007 Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V. Improving gene annotation using peptide mass spectrometry. Genome Research. 17: 231-9. PMID 17189379 DOI: 10.1101/Gr.5646507  0.36
2006 Florea LD. Bioinformatics of alternative splicing and its regulation Briefings in Bioinformatics. 7: 55-69. PMID 16761365 DOI: 10.1093/Bib/Bbk005  0.36
2005 Cahan P, Ahmad AM, Burke H, Fu S, Lai Y, Florea L, Dharker N, Kobrinski T, Kale P, McCaffrey TA. List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists. Gene. 360: 78-82. PMID 16140476 DOI: 10.1016/J.Gene.2005.07.008  0.36
2005 Lippert RA, Zhao X, Florea L, Mobarry C, Istrail S. Finding anchors for genomic sequence comparison. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 762-76. PMID 16108715 DOI: 10.1089/Cmb.2005.12.762  0.36
2005 Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G. Gene and alternative splicing annotation with AIR. Genome Research. 15: 54-66. PMID 15632090 DOI: 10.1101/Gr.2889405  0.36
2004 McClelland M, Sanderson KE, Clifton SW, Latreille P, Porwollik S, Sabo A, Meyer R, Bieri T, Ozersky P, McLellan M, Harkins CR, Wang C, Nguyen C, Berghoff A, Elliott G, ... ... Florea L, et al. Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nature Genetics. 36: 1268-74. PMID 15531882 DOI: 10.1038/Ng1470  0.36
2004 Istrail S, Florea L, Halldórsson BV, Kohlbacher O, Schwartz RS, Yap VB, Yewdell JW, Hoffman SL. Comparative immunopeptidomics of humans and their pathogens. Proceedings of the National Academy of Sciences of the United States of America. 101: 13268-72. PMID 15326311 DOI: 10.1073/Pnas.0404740101  0.36
2004 Porwollik S, Boyd EF, Choy C, Cheng P, Florea L, Proctor E, McClelland M. Characterization of Salmonella enterica subspecies I genovars by use of microarrays. Journal of Bacteriology. 186: 5883-98. PMID 15317794 DOI: 10.1128/Jb.186.17.5883-5898.2004  0.36
2004 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/Pnas.0307971100  0.36
2003 Florea L, Halldórsson B, Kohlbacher O, Schwartz R, Hoffman S, Istrail S. Epitope prediction algorithms for peptide-based vaccine design. Proceedings / Ieee Computer Society Bioinformatics Conference. Ieee Computer Society Bioinformatics Conference. 2: 17-26. PMID 16826643 DOI: 10.1109/CSB.2003.1227293  0.36
2003 Florea L, McClelland M, Riemer C, Schwartz S, Miller W. EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae. Nucleic Acids Research. 31: 3527-32. PMID 12824359 DOI: 10.1093/Nar/Gkg551  0.36
2003 Porwollik S, Frye J, Florea LD, Blackmer F, McClelland M. A non-redundant microarray of genes for two related bacteria. Nucleic Acids Research. 31: 1869-76. PMID 12655003 DOI: 10.1093/Nar/Gkg298  0.36
2002 Elnitski L, Riemer C, Petrykowska H, Florea L, Schwartz S, Miller W, Hardison R. PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences. Genomics. 80: 681-90. PMID 12504859 DOI: 10.1006/Geno.2002.7018  0.36
2001 McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, ... ... Florea L, et al. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 Nature. 413: 852-856. PMID 11677609 DOI: 10.1038/35101614  0.36
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, ... ... Florea L, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040  0.36
2000 McClelland M, Florea L, Sanderson K, Clifton SW, Parkhill J, Churcher C, Dougan G, Wilson RK, Miller W. Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. Nucleic Acids Research. 28: 4974-86. PMID 11121489 DOI: 10.1093/Nar/28.24.4974  0.36
2000 Florea L, Riemer C, Schwartz S, Zhang Z, Stojanovic N, Miller W, McClelland M. Web-based visualization tools for bacterial genome alignments Nucleic Acids Research. 28: 3486-3496. PMID 10982867 DOI: 10.1093/Nar/28.18.3486  0.36
1999 Stojanovic N, Florea L, Riemer C, Gumucio D, Slightom J, Goodman M, Miller W, Hardison R. Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions Nucleic Acids Research. 27: 3899-3910. PMID 10481030 DOI: 10.1093/Nar/27.19.3899  0.36
1998 Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Research. 8: 967-74. PMID 9750195 DOI: 10.1101/Gr.8.9.967  0.36
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