Jixian Zhai, Ph.D. - Publications

Affiliations: 
2013 Plant and Soil Science University of Delaware, Newark, DE, United States 

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chen C, Li J, Feng J, Liu B, Feng L, Yu X, Li G, Zhai J, Meyers BC, Xia R. sRNAanno-a database repository of uniformly annotated small RNAs in plants. Horticulture Research. 8: 45. PMID 33642576 DOI: 10.1038/s41438-021-00480-8  0.8
2021 Yu Y, Ji L, Le BH, Zhai J, Chen J, Luscher E, Gao L, Liu C, Cao X, Mo B, Ma J, Meyers BC, Chen X. Correction: ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. Plos Biology. 19: e3001120. PMID 33571183 DOI: 10.1371/journal.pbio.3001120  0.8
2020 Jia J, Ji R, Li Z, Yu Y, Nakano M, Long Y, Feng L, Qin C, Lu D, Zhan J, Xia R, Meyers BC, Liu B, Zhai J. Soybean Dicer-Like 2 Regulates Seed Coat Color via Production of Primary 22-nt Small Interfering RNAs from Long Inverted Repeats. The Plant Cell. PMID 33077493 DOI: 10.1105/tpc.20.00562  0.8
2019 Feng L, Zhang F, Zhang H, Zhao Y, Meyers BC, Zhai J. An online database for exploring over 2,000 Arabidopsis small RNA libraries. Plant Physiology. PMID 31843802 DOI: 10.1104/Pp.19.00959  0.8
2018 Hou Y, Zhai Y, Feng L, Karimi HZ, Rutter BD, Zeng L, Choi DS, Zhang B, Gu W, Chen X, Ye W, Innes RW, Zhai J, Ma W. A Phytophthora Effector Suppresses Trans-Kingdom RNAi to Promote Disease Susceptibility. Cell Host & Microbe. PMID 30595554 DOI: 10.1016/J.Chom.2018.11.007  0.36
2018 Tamim S, Cai Z, Mathioni SM, Zhai J, Teng C, Zhang Q, Meyers BC. Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses. The New Phytologist. PMID 29708601 DOI: 10.1111/Nph.15181  0.8
2018 Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, ... Zhai J, et al. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339507 DOI: 10.1073/Pnas.1716300115  0.36
2017 Yu Y, Ji L, Le BH, Zhai J, Chen J, Luscher E, Gao L, Liu C, Cao X, Mo B, Ma J, Meyers BC, Chen X. ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. Plos Biology. 15: e2001272. PMID 28231321 DOI: 10.1371/Journal.Pbio.2001272  0.8
2016 Kuo HY, Jacobsen EL, Long Y, Chen X, Zhai J. Characteristics and processing of Pol IV-dependent transcripts in Arabidopsis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 28089091 DOI: 10.1016/J.Jgg.2016.10.009  0.36
2016 Nan GL, Zhai J, Arikit S, Morrow D, Fernandes J, Mai L, Nguyen N, Meyers BC, Walbot V. MS23, a master basic helix-loop-helix factor, regulates the specification and development of tapetum in maize. Development (Cambridge, England). PMID 27913638 DOI: 10.1242/Dev.140673  0.8
2016 Yu P, Chen X, Zhao W, Zhang Z, Zhang Q, Han B, Zhai J, Chen M, Du B, Deng X, Ji F, Wang C, Xiang YT, Li D, Wu H, et al. Effect of rs1063843 in the CAMKK2 gene on the dorsolateral prefrontal cortex. Human Brain Mapping. PMID 27004598 DOI: 10.1002/Hbm.23181  0.36
2016 Zhai J, Gao L, Li S. Fast control optimization for switched linear systems based on harmony search algorithm Neurocomputing. 185: 183-190. DOI: 10.1016/j.neucom.2015.12.057  0.36
2016 Li S, Wen B, Li X, Zhai J. Structure and electrochemical property of ball-milled Ti0.26Zr0.07Mn0.1Ni0.33V0.24 alloy with 3 mass% B Journal of Alloys and Compounds. 654: 580-585. DOI: 10.1016/j.jallcom.2015.08.196  0.36
2015 Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of MicroRNAs, PhasiRNAs, and NB-LRR Genes in Response to a Plant Pathogen: Insights from Analyses of a Set of Soybean Rps Gene Near-Isogenic Lines. The Plant Genome. 8: eplantgenome2014.09.. PMID 33228285 DOI: 10.3835/plantgenome2014.09.0044  0.8
2015 Zhang Z, Chen X, Yu P, Zhang Q, Sun X, Gu H, Zhang H, Zhai J, Chen M, Du B, Deng X, Ji F, Wang C, Xiang Y, Li D, et al. Effect of rs1344706 in the ZNF804A gene on the connectivity between the hippocampal formation and posterior cingulate cortex. Schizophrenia Research. PMID 26654932 DOI: 10.1016/J.Schres.2015.11.024  0.36
2015 Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 163: 445-55. PMID 26451488 DOI: 10.1016/J.Cell.2015.09.032  0.8
2015 Zhu J, Wang Y, Yang F, Sang L, Zhai J, Li S, Li Y, Wang D, Lu C, Sun X. IL-33 alleviates DSS-induced chronic colitis in C57BL/6 mice colon lamina propria by suppressing Th17 cell response as well as Th1 cell response. International Immunopharmacology. PMID 26359542 DOI: 10.1016/j.intimp.2015.08.032  0.36
2015 Li Y, Yang F, Sang L, Zhu J, Han X, Shan F, Li S, Zhai J, Wang D, Lu C, Sun X. Enhanced therapeutic effects against murine colon carcinoma induced by a Colon 26/Ag85A-CD226 tumor cell vaccine. Oncology Reports. PMID 26238268 DOI: 10.3892/or.2015.4137  0.36
2015 Zhu J, Yang F, Sang L, Zhai J, Zhang X, Yue D, Li S, Li Y, Lu C, Sun X. IL-33 Aggravates DSS-Induced Acute Colitis in Mouse Colon Lamina Propria by Enhancing Th2 Cell Responses. Mediators of Inflammation. 2015: 913041. PMID 26161006 DOI: 10.1155/2015/913041  0.36
2015 Zhai J, Qu S, Li X, Zhong J, Chen X, Qu Z, Wu D. miR-129 suppresses tumor cell growth and invasion by targeting PAK5 in hepatocellular carcinoma. Biochemical and Biophysical Research Communications. PMID 26116538 DOI: 10.1016/j.bbrc.2015.06.108  0.36
2015 Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Libault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, et al. Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Plant Biotechnology Journal. PMID 25973713 DOI: 10.1111/Pbi.12387  0.8
2015 Tu B, Liu L, Xu C, Zhai J, Li S, Lopez MA, Zhao Y, Yu Y, Ramachandran V, Ren G, Yu B, Li S, Meyers BC, Mo B, Chen X. Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. Plos Genetics. 11: e1005119. PMID 25928405 DOI: 10.1371/Journal.Pgen.1005119  0.8
2015 Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation. The New Phytologist. 207: 748-59. PMID 25783944 DOI: 10.1111/Nph.13365  0.8
2015 Zhai J, Zhang H, Arikit S, Huang K, Nan GL, Walbot V, Meyers BC. Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers. Proceedings of the National Academy of Sciences of the United States of America. 112: 3146-51. PMID 25713378 DOI: 10.1073/Pnas.1418918112  0.8
2015 Zhang Z, Chen X, Yu P, Zhang Q, Sun X, Gu H, Zhang H, Zhai J, Chen M, Du B, Deng X, Ji F, Wang C, Xiang Y, Li D, et al. Evidence for the contribution of NOS1 gene polymorphism (rs3782206) to prefrontal function in schizophrenia patients and healthy controls. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 40: 1383-94. PMID 25490993 DOI: 10.1038/Npp.2014.323  0.36
2015 Cantó-Pastor A, Mollá-Morales A, Ernst E, Dahl W, Zhai J, Yan Y, Meyers BC, Shanklin J, Martienssen R. Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biology (Stuttgart, Germany). 17: 59-65. PMID 24989135 DOI: 10.1111/Plb.12215  0.8
2015 Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of microRNAs, phasiRNAs, and NB-LRR genes in response to a plant pathogen: Insights from analyses of a set of soybean rps gene near-isogenic lines Plant Genome. 8. DOI: 10.3835/Plantgenome2014.09.0044  0.8
2014 Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC. An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. The Plant Cell. 26: 4584-601. PMID 25465409 DOI: 10.1105/Tpc.114.131847  0.8
2014 Wong J, Gao L, Yang Y, Zhai J, Arikit S, Yu Y, Duan S, Chan V, Xiong Q, Yan J, Li S, Liu R, Wang Y, Tang G, Meyers BC, et al. Roles of small RNAs in soybean defense against Phytophthora sojae infection. The Plant Journal : For Cell and Molecular Biology. 79: 928-40. PMID 24944042 DOI: 10.1111/Tpj.12590  0.8
2014 Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF. Reprint of: construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates. Methods (San Diego, Calif.). 67: 36-44. PMID 24731939 DOI: 10.1016/j.ymeth.2014.04.001  0.8
2014 Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA. miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature. 508: 411-5. PMID 24670663 DOI: 10.1038/Nature13069  0.8
2014 Wei L, Gu L, Song X, Cui X, Lu Z, Zhou M, Wang L, Hu F, Zhai J, Meyers BC, Cao X. Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice. Proceedings of the National Academy of Sciences of the United States of America. 111: 3877-82. PMID 24554078 DOI: 10.1073/Pnas.1318131111  0.8
2014 Zhai J, Arikit S, Simon SA, Kingham BF, Meyers BC. Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing. Methods (San Diego, Calif.). 67: 84-90. PMID 23810899 DOI: 10.1016/J.Ymeth.2013.06.025  0.8
2013 Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ. Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biology. 14: R145. PMID 24367943 DOI: 10.1186/Gb-2013-14-12-R145  0.8
2013 Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF. Construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates. Methods (San Diego, Calif.). 64: 283-91. PMID 24018204 DOI: 10.1016/J.Ymeth.2013.08.032  0.8
2013 Bologna NG, Schapire AL, Zhai J, Chorostecki U, Boisbouvier J, Meyers BC, Palatnik JF. Multiple RNA recognition patterns during microRNA biogenesis in plants. Genome Research. 23: 1675-89. PMID 23990609 DOI: 10.1101/Gr.153387.112  0.8
2013 Zhai J, Zhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyers BC. Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species. The Plant Cell. 25: 2417-28. PMID 23839787 DOI: 10.1105/Tpc.113.114603  0.8
2013 Jeong DH, Thatcher SR, Brown RS, Zhai J, Park S, Rymarquis LA, Meyers BC, Green PJ. Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiology. 162: 1225-45. PMID 23709668 DOI: 10.1104/Pp.113.219873  0.8
2013 Raman V, Simon SA, Romag A, Demirci F, Mathioni SM, Zhai J, Meyers BC, Donofrio NM. Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae. Bmc Genomics. 14: 326. PMID 23663523 DOI: 10.1186/1471-2164-14-326  0.8
2013 Arikit S, Zhai J, Meyers BC. Biogenesis and function of rice small RNAs from non-coding RNA precursors. Current Opinion in Plant Biology. 16: 170-9. PMID 23466255 DOI: 10.1016/J.Pbi.2013.01.006  0.8
2013 DePamphilis CW, Palmer JD, Rounsley S, Sankoff D, Schuster SC, Ammiraju JSS, Barbazuk WB, Chamala S, Chanderbali AS, Determann R, Hong M, Ralph P, Talag J, Tomsho L, Walts B, ... ... Zhai J, et al. The Amborella genome and the evolution of flowering plants Science. 342. DOI: 10.1126/science.1241089  0.8
2012 Zhai J, Meyers BC. Deep sequencing from hen1 mutants to identify small RNA 3' modifications. Cold Spring Harbor Symposia On Quantitative Biology. 77: 213-9. PMID 23393108 DOI: 10.1101/Sqb.2013.77.014779  0.8
2012 Lee TF, Gurazada SG, Zhai J, Li S, Simon SA, Matzke MA, Chen X, Meyers BC. RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigenetics : Official Journal of the Dna Methylation Society. 7: 781-95. PMID 22647529 DOI: 10.4161/Epi.20290  0.8
2012 Zhao Y, Yu Y, Zhai J, Ramachandran V, Dinh TT, Meyers BC, Mo B, Chen X. The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation. Current Biology : Cb. 22: 689-94. PMID 22464194 DOI: 10.1016/J.Cub.2012.02.051  0.8
2012 Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X. Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. The Plant Journal : For Cell and Molecular Biology. 69: 462-74. PMID 21973320 DOI: 10.1111/J.1365-313X.2011.04805.X  0.8
2011 Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ. Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. The Plant Cell. 23: 4185-207. PMID 22158467 DOI: 10.1105/Tpc.111.089045  0.8
2011 Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, et al. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes & Development. 25: 2540-53. PMID 22156213 DOI: 10.1101/Gad.177527.111  0.8
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, ... ... Zhai J, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625  0.8
2010 Lee TF, Zhai J, Meyers BC. Conservation and divergence in eukaryotic DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 107: 9027-8. PMID 20457928 DOI: 10.1073/Pnas.1005440107  0.8
2010 Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Research. 38: 5844-50. PMID 20448024 DOI: 10.1093/Nar/Gkq348  0.8
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Zhai J, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747  0.8
2010 Meyers BC, Simon SA, Zhai J. MicroRNA processing: battle of the bulge. Current Biology : Cb. 20: R68-70. PMID 20129044 DOI: 10.1016/J.Cub.2009.12.008  0.8
2009 De Paoli E, Dorantes-Acosta A, Zhai J, Accerbi M, Jeong DH, Park S, Meyers BC, Jorgensen RA, Green PJ. Distinct extremely abundant siRNAs associated with cosuppression in petunia. Rna (New York, N.Y.). 15: 1965-70. PMID 19776157 DOI: 10.1261/Rna.1706109  0.8
2009 Simon SA, Zhai J, Nandety RS, McCormick KP, Zeng J, Mejia D, Meyers BC. Short-read sequencing technologies for transcriptional analyses. Annual Review of Plant Biology. 60: 305-33. PMID 19575585 DOI: 10.1146/Annurev.Arplant.043008.092032  0.8
2009 Park W, Zhai J, Lee JY. Highly efficient gene silencing using perfect complementary artificial miRNA targeting AP1 or heteromeric artificial miRNA targeting AP1 and CAL genes. Plant Cell Reports. 28: 469-80. PMID 19066901 DOI: 10.1007/S00299-008-0651-5  0.8
2008 Zhai J, Liu J, Liu B, Li P, Meyers BC, Chen X, Cao X. Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. Plos Genetics. 4: e1000056. PMID 18437202 DOI: 10.1371/Journal.Pgen.1000056  0.8
2008 Simon SA, Zhai J, Zeng J, Meyers BC. The cornucopia of small RNAs in plant genomes Rice. 1: 52-62. DOI: 10.1007/S12284-008-9008-5  0.8
2007 Pei Y, Niu L, Lu F, Liu C, Zhai J, Kong X, Cao X. Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiology. 144: 1913-23. PMID 17573539 DOI: 10.1104/Pp.107.099531  0.8
2007 Ding Y, Wang X, Su L, Zhai J, Cao S, Zhang D, Liu C, Bi Y, Qian Q, Cheng Z, Chu C, Cao X. SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. The Plant Cell. 19: 9-22. PMID 17259261 DOI: 10.1105/Tpc.106.048124  0.8
2006 Xia R, Wang J, Liu C, Wang Y, Wang Y, Zhai J, Liu J, Hong X, Cao X, Zhu JK, Gong Z. ROR1/RPA2A, a putative replication protein A2, functions in epigenetic gene silencing and in regulation of meristem development in Arabidopsis. The Plant Cell. 18: 85-103. PMID 16326925 DOI: 10.1105/Tpc.105.037507  0.8
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