| Year |
Citation |
Score |
| 2024 |
Huang G, Bao Z, Feng L, Zhai J, Wendel JF, Cao X, Zhu Y. A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development. Nature Genetics. 56: 1953-1963. PMID 39147922 DOI: 10.1038/s41588-024-01877-6 |
0.325 |
|
| 2024 |
Zhang Y, Zhang X, Tang Q, Li L, Jiang T, Fang Y, Zhang H, Zhai J, Ren G, Zheng B. A repertoire of intronic lariat RNAs reveals tissue-specific regulation and target mimicry potential in plants. Science China. Life Sciences. PMID 38489006 DOI: 10.1007/s11427-023-2466-7 |
0.435 |
|
| 2022 |
Zhang H, Jia J, Zhai J. Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq libraries. Science China. Life Sciences. PMID 36409390 DOI: 10.1007/s11427-022-2193-3 |
0.346 |
|
| 2022 |
Qin Y, Long Y, Zhai J. Genome-wide characterization of nascent RNA processing in plants. Current Opinion in Plant Biology. 69: 102294. PMID 36063636 DOI: 10.1016/j.pbi.2022.102294 |
0.401 |
|
| 2022 |
Jia J, Lu W, Liu B, Fang H, Yu Y, Mo W, Zhang H, Jin X, Shu Y, Long Y, Pei Y, Zhai J. An atlas of plant full-length RNA reveals tissue-specific and monocots-dicots conserved regulation of poly(A) tail length. Nature Plants. PMID 35982302 DOI: 10.1038/s41477-022-01224-9 |
0.306 |
|
| 2022 |
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris JC, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. A SYBR Gold-based Label-free Dicing Assay. Bio-Protocol. 12: e4382. PMID 35530519 DOI: 10.21769/BioProtoc.4382 |
0.527 |
|
| 2022 |
Lu D, Feng L, Zhai J, Li B, Xi M. Safeguard DCL2-Dependent 22-nt siRNA generation by DCL1. Biochemical and Biophysical Research Communications. 605: 97-103. PMID 35316769 DOI: 10.1016/j.bbrc.2022.03.076 |
0.474 |
|
| 2022 |
Yu Y, Zhang H, Long Y, Shu Y, Zhai J. PPRD: a comprehensive online database for expression analysis of ~45,000 plant public RNA-Seq libraries. Plant Biotechnology Journal. PMID 35218297 DOI: 10.1111/pbi.13798 |
0.353 |
|
| 2021 |
Mo W, Liu B, Zhang H, Jin X, Lu D, Yu Y, Liu Y, Jia J, Long Y, Deng X, Cao X, Guo H, Zhai J. Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing. Genome Biology. 22: 322. PMID 34823554 DOI: 10.1186/s13059-021-02543-4 |
0.356 |
|
| 2021 |
Zhang Y, Waseem M, Zeng Z, Xu J, Chen C, Liu Y, Zhai J, Xia R. MicroRNA482/2118, a miRNA superfamily essential for both disease resistance and plant development. The New Phytologist. PMID 34761409 DOI: 10.1111/nph.17853 |
0.436 |
|
| 2021 |
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science (New York, N.Y.). eabl4546. PMID 34648373 DOI: 10.1126/science.abl4546 |
0.575 |
|
| 2021 |
Long Y, Jia J, Mo W, Jin X, Zhai J. FLEP-seq: simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing. Nature Protocols. PMID 34331052 DOI: 10.1038/s41596-021-00581-7 |
0.398 |
|
| 2021 |
Qiao Y, Xia R, Zhai J, Hou Y, Feng L, Zhai Y, Ma W. Small RNAs in Plant Immunity and Virulence of Filamentous Pathogens. Annual Review of Phytopathology. PMID 34077241 DOI: 10.1146/annurev-phyto-121520-023514 |
0.383 |
|
| 2021 |
Chen C, Li J, Feng J, Liu B, Feng L, Yu X, Li G, Zhai J, Meyers BC, Xia R. sRNAanno-a database repository of uniformly annotated small RNAs in plants. Horticulture Research. 8: 45. PMID 33642576 DOI: 10.1038/s41438-021-00480-8 |
0.645 |
|
| 2021 |
Long Y, Liu Z, Jia J, Mo W, Fang L, Lu D, Liu B, Zhang H, Chen W, Zhai J. FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants. Genome Biology. 22: 66. PMID 33608047 DOI: 10.1186/s13059-021-02288-0 |
0.363 |
|
| 2021 |
Yu Y, Ji L, Le BH, Zhai J, Chen J, Luscher E, Gao L, Liu C, Cao X, Mo B, Ma J, Meyers BC, Chen X. Correction: ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. Plos Biology. 19: e3001120. PMID 33571183 DOI: 10.1371/journal.pbio.3001120 |
0.44 |
|
| 2020 |
Jia J, Ji R, Li Z, Yu Y, Nakano M, Long Y, Feng L, Qin C, Lu D, Zhan J, Xia R, Meyers BC, Liu B, Zhai J. Soybean Dicer-Like 2 Regulates Seed Coat Color via Production of Primary 22-nt Small Interfering RNAs from Long Inverted Repeats. The Plant Cell. PMID 33077493 DOI: 10.1105/tpc.20.00562 |
0.73 |
|
| 2020 |
Zhang H, Zhang F, Yu Y, Feng L, Jia J, Liu B, Li B, Guo H, Zhai J. A comprehensive online database for exploring ∼20,000 public Arabidopsis RNA-Seq libraries. Molecular Plant. PMID 32768600 DOI: 10.1016/J.Molp.2020.08.001 |
0.44 |
|
| 2020 |
Jia J, Long Y, Zhang H, Li Z, Liu Z, Zhao Y, Lu D, Jin X, Deng X, Xia R, Cao X, Zhai J. Post-transcriptional splicing of nascent RNA contributes to widespread intron retention in plants. Nature Plants. PMID 32541953 DOI: 10.1038/S41477-020-0688-1 |
0.491 |
|
| 2020 |
Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, et al. The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nature Communications. 11: 2798. PMID 32493925 DOI: 10.1038/S41467-020-16651-5 |
0.545 |
|
| 2020 |
Wu H, Li B, Iwakawa HO, Pan Y, Tang X, Ling-Hu Q, Liu Y, Sheng S, Feng L, Zhang H, Zhang X, Tang Z, Xia X, Zhai J, Guo H. Plant 22-nt siRNAs mediate translational repression and stress adaptation. Nature. 581: 89-93. PMID 32376953 DOI: 10.1038/S41586-020-2231-Y |
0.483 |
|
| 2020 |
Bailey-Serres J, Zhai J, Seki M. The Dynamic Kaleidoscope of RNA Biology in Plants. Plant Physiology. 182: 1-9. PMID 31908318 DOI: 10.1104/Pp.19.01558 |
0.476 |
|
| 2019 |
Feng L, Zhang F, Zhang H, Zhao Y, Meyers BC, Zhai J. An online database for exploring over 2,000 Arabidopsis small RNA libraries. Plant Physiology. PMID 31843802 DOI: 10.1104/Pp.19.00959 |
0.61 |
|
| 2019 |
Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, et al. Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 31740773 DOI: 10.1038/S41477-019-0547-0 |
0.365 |
|
| 2018 |
Hou Y, Zhai Y, Feng L, Karimi HZ, Rutter BD, Zeng L, Choi DS, Zhang B, Gu W, Chen X, Ye W, Innes RW, Zhai J, Ma W. A Phytophthora Effector Suppresses Trans-Kingdom RNAi to Promote Disease Susceptibility. Cell Host & Microbe. PMID 30595554 DOI: 10.1016/J.Chom.2018.11.007 |
0.459 |
|
| 2018 |
Tamim S, Cai Z, Mathioni SM, Zhai J, Teng C, Zhang Q, Meyers BC. Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses. The New Phytologist. PMID 29708601 DOI: 10.1111/Nph.15181 |
0.776 |
|
| 2018 |
Liu W, Duttke SH, Hetzel J, Groth M, Feng S, Gallego-Bartolome J, Zhong Z, Kuo HY, Wang Z, Zhai J, Chory J, Jacobsen SE. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. Nature Plants. PMID 29379150 DOI: 10.1038/S41477-017-0100-Y |
0.666 |
|
| 2018 |
Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, ... Zhai J, et al. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339507 DOI: 10.1073/Pnas.1716300115 |
0.571 |
|
| 2017 |
Yu Y, Ji L, Le BH, Zhai J, Chen J, Luscher E, Gao L, Liu C, Cao X, Mo B, Ma J, Meyers BC, Chen X. ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. Plos Biology. 15: e2001272. PMID 28231321 DOI: 10.1371/Journal.Pbio.2001272 |
0.656 |
|
| 2016 |
Kuo HY, Jacobsen EL, Long Y, Chen X, Zhai J. Characteristics and processing of Pol IV-dependent transcripts in Arabidopsis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 28089091 DOI: 10.1016/J.Jgg.2016.10.009 |
0.513 |
|
| 2016 |
Nan GL, Zhai J, Arikit S, Morrow D, Fernandes J, Mai L, Nguyen N, Meyers BC, Walbot V. MS23, a master basic helix-loop-helix factor, regulates the specification and development of tapetum in maize. Development (Cambridge, England). PMID 27913638 DOI: 10.1242/Dev.140673 |
0.505 |
|
| 2016 |
Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. DNA methylome of the 20-gigabase Norway spruce genome. Proceedings of the National Academy of Sciences of the United States of America. 113: E8106-E8113. PMID 27911846 DOI: 10.1073/Pnas.1618019113 |
0.566 |
|
| 2016 |
Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, et al. MTHFD1 controls DNA methylation in Arabidopsis. Nature Communications. 7: 11640. PMID 27291711 DOI: 10.1038/Ncomms11640 |
0.545 |
|
| 2016 |
Wu K, Zhu C, Yao Y, Wang X, Song J, Zhai J. MicroRNA-155-enhanced autophagy in human gastric epithelial cell in response to Helicobacter pylori. Saudi Journal of Gastroenterology : Official Journal of the Saudi Gastroenterology Association. 22: 30-6. PMID 26831604 DOI: 10.4103/1319-3767.173756 |
0.311 |
|
| 2015 |
Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of MicroRNAs, PhasiRNAs, and NB-LRR Genes in Response to a Plant Pathogen: Insights from Analyses of a Set of Soybean Rps Gene Near-Isogenic Lines. The Plant Genome. 8: eplantgenome2014.09.. PMID 33228285 DOI: 10.3835/plantgenome2014.09.0044 |
0.625 |
|
| 2015 |
Cui H, Zhai J, Ma C. miRLocator: Machine Learning-Based Prediction of Mature MicroRNAs within Plant Pre-miRNA Sequences. Plos One. 10: e0142753. PMID 26558614 DOI: 10.1371/journal.pone.0142753 |
0.335 |
|
| 2015 |
Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proceedings of the National Academy of Sciences of the United States of America. 112: 13729-34. PMID 26483493 DOI: 10.1073/Pnas.1519067112 |
0.574 |
|
| 2015 |
Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 163: 445-55. PMID 26451488 DOI: 10.1016/J.Cell.2015.09.032 |
0.717 |
|
| 2015 |
Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Libault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, et al. Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Plant Biotechnology Journal. PMID 25973713 DOI: 10.1111/Pbi.12387 |
0.654 |
|
| 2015 |
Tu B, Liu L, Xu C, Zhai J, Li S, Lopez MA, Zhao Y, Yu Y, Ramachandran V, Ren G, Yu B, Li S, Meyers BC, Mo B, Chen X. Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. Plos Genetics. 11: e1005119. PMID 25928405 DOI: 10.1371/Journal.Pgen.1005119 |
0.594 |
|
| 2015 |
Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation. The New Phytologist. 207: 748-59. PMID 25783944 DOI: 10.1111/Nph.13365 |
0.65 |
|
| 2015 |
Zhai J, Zhang H, Arikit S, Huang K, Nan GL, Walbot V, Meyers BC. Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers. Proceedings of the National Academy of Sciences of the United States of America. 112: 3146-51. PMID 25713378 DOI: 10.1073/Pnas.1418918112 |
0.612 |
|
| 2015 |
Luan Y, Cui J, Zhai J, Li J, Han L, Meng J. High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated with Phytophthora infestans. Planta. 241: 1405-16. PMID 25697288 DOI: 10.1007/S00425-015-2267-7 |
0.383 |
|
| 2015 |
Cantó-Pastor A, Mollá-Morales A, Ernst E, Dahl W, Zhai J, Yan Y, Meyers BC, Shanklin J, Martienssen R. Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biology (Stuttgart, Germany). 17: 59-65. PMID 24989135 DOI: 10.1111/Plb.12215 |
0.573 |
|
| 2015 |
Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of microRNAs, phasiRNAs, and NB-LRR genes in response to a plant pathogen: Insights from analyses of a set of soybean rps gene near-isogenic lines Plant Genome. 8. DOI: 10.3835/Plantgenome2014.09.0044 |
0.663 |
|
| 2014 |
Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC. An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. The Plant Cell. 26: 4584-601. PMID 25465409 DOI: 10.1105/Tpc.114.131847 |
0.819 |
|
| 2014 |
Zhai J, Dong Y, Sun Y, Wang Q, Wang N, Wang F, Liu W, Li X, Chen H, Yao N, Guan L, Chen K, Cui X, Yang M, Li H. Discovery and analysis of microRNAs in Leymus chinensis under saline-alkali and drought stress using high-throughput sequencing. Plos One. 9: e105417. PMID 25369004 DOI: 10.1371/journal.pone.0105417 |
0.311 |
|
| 2014 |
Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Molecular Cell. 55: 694-707. PMID 25132175 DOI: 10.1016/J.Molcel.2014.07.008 |
0.537 |
|
| 2014 |
Wong J, Gao L, Yang Y, Zhai J, Arikit S, Yu Y, Duan S, Chan V, Xiong Q, Yan J, Li S, Liu R, Wang Y, Tang G, Meyers BC, et al. Roles of small RNAs in soybean defense against Phytophthora sojae infection. The Plant Journal : For Cell and Molecular Biology. 79: 928-40. PMID 24944042 DOI: 10.1111/Tpj.12590 |
0.654 |
|
| 2014 |
Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF. Reprint of: construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates. Methods (San Diego, Calif.). 67: 36-44. PMID 24731939 DOI: 10.1016/j.ymeth.2014.04.001 |
0.606 |
|
| 2014 |
Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA. miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature. 508: 411-5. PMID 24670663 DOI: 10.1038/Nature13069 |
0.713 |
|
| 2014 |
Wei L, Gu L, Song X, Cui X, Lu Z, Zhou M, Wang L, Hu F, Zhai J, Meyers BC, Cao X. Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice. Proceedings of the National Academy of Sciences of the United States of America. 111: 3877-82. PMID 24554078 DOI: 10.1073/Pnas.1318131111 |
0.651 |
|
| 2014 |
Zhai J, Arikit S, Simon SA, Kingham BF, Meyers BC. Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing. Methods (San Diego, Calif.). 67: 84-90. PMID 23810899 DOI: 10.1016/J.Ymeth.2013.06.025 |
0.665 |
|
| 2013 |
Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ. Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biology. 14: R145. PMID 24367943 DOI: 10.1186/Gb-2013-14-12-R145 |
0.673 |
|
| 2013 |
Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF. Construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates. Methods (San Diego, Calif.). 64: 283-91. PMID 24018204 DOI: 10.1016/J.Ymeth.2013.08.032 |
0.646 |
|
| 2013 |
Bologna NG, Schapire AL, Zhai J, Chorostecki U, Boisbouvier J, Meyers BC, Palatnik JF. Multiple RNA recognition patterns during microRNA biogenesis in plants. Genome Research. 23: 1675-89. PMID 23990609 DOI: 10.1101/Gr.153387.112 |
0.634 |
|
| 2013 |
Zhai J, Zhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyers BC. Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species. The Plant Cell. 25: 2417-28. PMID 23839787 DOI: 10.1105/Tpc.113.114603 |
0.669 |
|
| 2013 |
Jeong DH, Thatcher SR, Brown RS, Zhai J, Park S, Rymarquis LA, Meyers BC, Green PJ. Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiology. 162: 1225-45. PMID 23709668 DOI: 10.1104/Pp.113.219873 |
0.688 |
|
| 2013 |
Raman V, Simon SA, Romag A, Demirci F, Mathioni SM, Zhai J, Meyers BC, Donofrio NM. Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae. Bmc Genomics. 14: 326. PMID 23663523 DOI: 10.1186/1471-2164-14-326 |
0.686 |
|
| 2013 |
Arikit S, Zhai J, Meyers BC. Biogenesis and function of rice small RNAs from non-coding RNA precursors. Current Opinion in Plant Biology. 16: 170-9. PMID 23466255 DOI: 10.1016/J.Pbi.2013.01.006 |
0.661 |
|
| 2012 |
Zhai J, Meyers BC. Deep sequencing from hen1 mutants to identify small RNA 3' modifications. Cold Spring Harbor Symposia On Quantitative Biology. 77: 213-9. PMID 23393108 DOI: 10.1101/Sqb.2013.77.014779 |
0.677 |
|
| 2012 |
Lee TF, Gurazada SG, Zhai J, Li S, Simon SA, Matzke MA, Chen X, Meyers BC. RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigenetics : Official Journal of the Dna Methylation Society. 7: 781-95. PMID 22647529 DOI: 10.4161/Epi.20290 |
0.655 |
|
| 2012 |
Zhao Y, Yu Y, Zhai J, Ramachandran V, Dinh TT, Meyers BC, Mo B, Chen X. The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation. Current Biology : Cb. 22: 689-94. PMID 22464194 DOI: 10.1016/J.Cub.2012.02.051 |
0.684 |
|
| 2012 |
Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X. Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. The Plant Journal : For Cell and Molecular Biology. 69: 462-74. PMID 21973320 DOI: 10.1111/J.1365-313X.2011.04805.X |
0.672 |
|
| 2011 |
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ. Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. The Plant Cell. 23: 4185-207. PMID 22158467 DOI: 10.1105/Tpc.111.089045 |
0.684 |
|
| 2011 |
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, et al. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes & Development. 25: 2540-53. PMID 22156213 DOI: 10.1101/Gad.177527.111 |
0.661 |
|
| 2011 |
Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, ... ... Zhai J, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625 |
0.541 |
|
| 2010 |
Lee TF, Zhai J, Meyers BC. Conservation and divergence in eukaryotic DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 107: 9027-8. PMID 20457928 DOI: 10.1073/Pnas.1005440107 |
0.548 |
|
| 2010 |
Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Research. 38: 5844-50. PMID 20448024 DOI: 10.1093/Nar/Gkq348 |
0.681 |
|
| 2010 |
Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Zhai J, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747 |
0.528 |
|
| 2010 |
Meyers BC, Simon SA, Zhai J. MicroRNA processing: battle of the bulge. Current Biology : Cb. 20: R68-70. PMID 20129044 DOI: 10.1016/J.Cub.2009.12.008 |
0.576 |
|
| 2009 |
De Paoli E, Dorantes-Acosta A, Zhai J, Accerbi M, Jeong DH, Park S, Meyers BC, Jorgensen RA, Green PJ. Distinct extremely abundant siRNAs associated with cosuppression in petunia. Rna (New York, N.Y.). 15: 1965-70. PMID 19776157 DOI: 10.1261/Rna.1706109 |
0.623 |
|
| 2009 |
Simon SA, Zhai J, Nandety RS, McCormick KP, Zeng J, Mejia D, Meyers BC. Short-read sequencing technologies for transcriptional analyses. Annual Review of Plant Biology. 60: 305-33. PMID 19575585 DOI: 10.1146/Annurev.Arplant.043008.092032 |
0.746 |
|
| 2009 |
Park W, Zhai J, Lee JY. Highly efficient gene silencing using perfect complementary artificial miRNA targeting AP1 or heteromeric artificial miRNA targeting AP1 and CAL genes. Plant Cell Reports. 28: 469-80. PMID 19066901 DOI: 10.1007/S00299-008-0651-5 |
0.466 |
|
| 2008 |
Zhai J, Liu J, Liu B, Li P, Meyers BC, Chen X, Cao X. Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. Plos Genetics. 4: e1000056. PMID 18437202 DOI: 10.1371/Journal.Pgen.1000056 |
0.624 |
|
| 2008 |
Simon SA, Zhai J, Zeng J, Meyers BC. The cornucopia of small RNAs in plant genomes Rice. 1: 52-62. DOI: 10.1007/S12284-008-9008-5 |
0.688 |
|
| 2007 |
Pei Y, Niu L, Lu F, Liu C, Zhai J, Kong X, Cao X. Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiology. 144: 1913-23. PMID 17573539 DOI: 10.1104/Pp.107.099531 |
0.672 |
|
| 2007 |
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