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Arvind K. Chavali, Ph.D. - Publications

Affiliations: 
2011 University of Virginia, Charlottesville, VA 
Area:
Computational Systems Biology
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14/18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Chavali AK, Rhee SY. Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites. Briefings in Bioinformatics. PMID 28398567 DOI: 10.1093/Bib/Bbx020  0.347
2017 Schlapfer P, Zhang P, Wang C, Kim T, Banf M, Chae L, Dreher K, Chavali AK, Nilo-Poyanco R, Bernard T, Kahn D, Rhee SY. Genome-wide prediction of metabolic enzymes, pathways and gene clusters in plants. Plant Physiology. PMID 28228535 DOI: 10.1104/Pp.16.01942  0.358
2015 Chavali AK, Wong VC, Miller-Jensen K. Distinct promoter activation mechanisms modulate noise-driven HIV gene expression. Scientific Reports. 5: 17661. PMID 26666681 DOI: 10.1038/Srep17661  0.317
2013 Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, et al. A community-driven global reconstruction of human metabolism. Nature Biotechnology. 31: 419-25. PMID 23455439 DOI: 10.1038/Nbt.2488  0.632
2013 Blais EM, Chavali AK, Papin JA. Linking genome-scale metabolic modeling and genome annotation. Methods in Molecular Biology (Clifton, N.J.). 985: 61-83. PMID 23417799 DOI: 10.1007/978-1-62703-299-5_4  0.742
2012 Chavali AK, Blazier AS, Tlaxca JL, Jensen PA, Pearson RD, Papin JA. Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease. Bmc Systems Biology. 6: 27. PMID 22540944 DOI: 10.1186/1752-0509-6-27  0.704
2012 Chavali AK, D'Auria KM, Hewlett EL, Pearson RD, Papin JA. A metabolic network approach for the identification and prioritization of antimicrobial drug targets. Trends in Microbiology. 20: 113-23. PMID 22300758 DOI: 10.1016/J.Tim.2011.12.004  0.67
2011 Benedict KF, Mac Gabhann F, Amanfu RK, Chavali AK, Gianchandani EP, Glaw LS, Oberhardt MA, Thorne BC, Yang JH, Papin JA, Peirce SM, Saucerman JJ, Skalak TC. Systems analysis of small signaling modules relevant to eight human diseases. Annals of Biomedical Engineering. 39: 621-35. PMID 21132372 DOI: 10.1007/S10439-010-0208-Y  0.644
2010 Gianchandani EP, Chavali AK, Papin JA. The application of flux balance analysis in systems biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 372-82. PMID 20836035 DOI: 10.1002/Wsbm.60  0.74
2009 Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, et al. Metabolic network analysis integrated with transcript verification for sequenced genomes. Nature Methods. 6: 589-92. PMID 19597503 DOI: 10.1038/Nmeth.1348  0.714
2009 Roberts SB, Robichaux JL, Chavali AK, Manque PA, Lee V, Lara AM, Papin JA, Buck GA. Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi. Bmc Systems Biology. 3: 52. PMID 19445715 DOI: 10.1186/1752-0509-3-52  0.666
2009 Oberhardt MA, Chavali AK, Papin JA. Flux balance analysis: interrogating genome-scale metabolic networks. Methods in Molecular Biology (Clifton, N.J.). 500: 61-80. PMID 19399432 DOI: 10.1007/978-1-59745-525-1_3  0.732
2008 Chavali AK, Gianchandani EP, Tung KS, Lawrence MB, Peirce SM, Papin JA. Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling. Trends in Immunology. 29: 589-99. PMID 18964301 DOI: 10.1016/J.It.2008.08.006  0.698
2008 Chavali AK, Whittemore JD, Eddy JA, Williams KT, Papin JA. Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major. Molecular Systems Biology. 4: 177. PMID 18364711 DOI: 10.1038/Msb.2008.15  0.685
Low-probability matches (unlikely to be authored by this person)
2015 Ramji R, Wong VC, Chavali AK, Gearhart LM, Miller-Jensen K. A passive-flow microfluidic device for imaging latent HIV activation dynamics in single T cells. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 26138068 DOI: 10.1039/C5Ib00094G  0.292
2008 Flanagan K, Modrusan Z, Cornelius J, Chavali A, Kasman I, Komuves L, Mo L, Diehl L. Intestinal epithelial cell up-regulation of LY6 molecules during colitis results in enhanced chemokine secretion. Journal of Immunology (Baltimore, Md. : 1950). 180: 3874-81. PMID 18322195 DOI: 10.4049/Jimmunol.180.6.3874  0.284
2018 Wong VC, Bass VL, Bullock ME, Chavali AK, Lee REC, Mothes W, Gaudet S, Miller-Jensen K. NF-κB-Chromatin Interactions Drive Diverse Phenotypes by Modulating Transcriptional Noise. Cell Reports. 22: 585-599. PMID 29346759 DOI: 10.1016/J.Celrep.2017.12.080  0.255
2007 Flanagan K, Cornelius J, Modrusan Z, Mo L, Chavali A, Kasman I, Komuves L, Diehl L. Gene Expression Patterns of Intestinal Epithelial Cells in Murine Models of Colitis Clinical Immunology. 123. DOI: 10.1016/J.Clim.2007.03.123  0.216
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