Sara E. Nichols, Ph.D. - Publications

Affiliations: 
2009 Yale University, New Haven, CT 
Area:
computational chemistry and molecular design

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Bertolini R, Goepfert C, Andrieu T, Nichols S, Walter MA, Frey FJ, McCammon JA, Frey BM. 18F-RB390: innovative ligand for imaging the T877A androgen receptor mutant in prostate cancer via positron emission tomography (PET). The Prostate. 75: 348-59. PMID 25358634 DOI: 10.1002/Pros.22919  0.398
2014 Miao Y, Nichols SE, McCammon JA. Free energy landscape of G-protein coupled receptors, explored by accelerated molecular dynamics. Physical Chemistry Chemical Physics : Pccp. 16: 6398-406. PMID 24445284 DOI: 10.1039/C3Cp53962H  0.613
2014 Miao Y, Nichols SE, McCammon JA. Mapping of allosteric druggable sites in activation-associated conformers of the M2 muscarinic receptor. Chemical Biology & Drug Design. 83: 237-46. PMID 24112716 DOI: 10.1111/Cbdd.12233  0.641
2013 Miao Y, Nichols SE, Gasper PM, Metzger VT, McCammon JA. Activation and dynamic network of the M2 muscarinic receptor. Proceedings of the National Academy of Sciences of the United States of America. 110: 10982-7. PMID 23781107 DOI: 10.1073/pnas.1309755110  0.673
2013 Kim MO, Nichols SE, Wang Y, McCammon JA. Effects of histidine protonation and rotameric states on virtual screening of M. tuberculosis RmlC. Journal of Computer-Aided Molecular Design. 27: 235-46. PMID 23579613 DOI: 10.1007/S10822-013-9643-9  0.56
2013 Nichols SE, Hernández CX, Wang Y, McCammon JA. Structure-based network analysis of an evolved G protein-coupled receptor homodimer interface. Protein Science : a Publication of the Protein Society. 22: 745-54. PMID 23553730 DOI: 10.1002/Pro.2258  0.599
2012 Nichols SE, Swift RV, Amaro RE. Rational prediction with molecular dynamics for hit identification. Current Topics in Medicinal Chemistry. 12: 2002-12. PMID 23110535 DOI: 10.2174/156802612804910313  0.483
2012 Ortiz-Sanchez JM, Nichols SE, Sayyah J, Brown JH, McCammon JA, Grant BJ. Identification of potential small molecule binding pockets on Rho family GTPases. Plos One. 7: e40809. PMID 22815826 DOI: 10.1371/Journal.Pone.0040809  0.597
2012 Lawrenz M, Wereszczynski J, Ortiz-Sánchez JM, Nichols SE, McCammon JA. Thermodynamic integration to predict host-guest binding affinities. Journal of Computer-Aided Molecular Design. 26: 569-76. PMID 22350568 DOI: 10.1007/S10822-012-9542-5  0.511
2012 Nichols SE, Baron R, McCammon JA. On the use of molecular dynamics receptor conformations for virtual screening. Methods in Molecular Biology (Clifton, N.J.). 819: 93-103. PMID 22183532 DOI: 10.1007/978-1-61779-465-0_7  0.636
2012 Nichols SE, Wang Y, McCammon JA. Molecular Simulations Revealing Dynamics of a Chemokine Receptor Homodimer Biophysical Journal. 102: 513a. DOI: 10.1016/J.Bpj.2011.11.2808  0.624
2011 Andrieu T, Bertolini R, Nichols SE, Setoud R, Frey FJ, Baker ME, Frey BM. A novel steroidal antiandrogen targeting wild type and mutant androgen receptors. Biochemical Pharmacology. 82: 1651-62. PMID 21907706 DOI: 10.1016/J.Bcp.2011.08.020  0.437
2011 Nichols SE, Baron R, Ivetac A, McCammon JA. Predictive power of molecular dynamics receptor structures in virtual screening. Journal of Chemical Information and Modeling. 51: 1439-46. PMID 21534609 DOI: 10.1021/Ci200117N  0.599
2009 Nichols SE, Domaoal RA, Thakur VV, Tirado-Rives J, Anderson KS, Jorgensen WL. Discovery of wild-type and Y181C mutant non-nucleoside HIV-1 reverse transcriptase inhibitors using virtual screening with multiple protein structures. Journal of Chemical Information and Modeling. 49: 1272-9. PMID 19374380 DOI: 10.1021/Ci900068K  0.53
2009 Dasgupta T, Chitnumsub P, Kamchonwongpaisan S, Maneeruttanarungroj C, Nichols SE, Lyons TM, Tirado-Rives J, Jorgensen WL, Yuthavong Y, Anderson KS. Exploiting structural analysis, in silico screening, and serendipity to identify novel inhibitors of drug-resistant falciparum malaria. Acs Chemical Biology. 4: 29-40. PMID 19146480 DOI: 10.1021/Cb8002804  0.631
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