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Scott Barolo, Ph.D. - Publications

Affiliations: 
Cell & Developmental Biology University of Michigan Medical School, Ann Arbor, MI, United States 
Area:
cis-regulatory elements, enhancers, developmental cell signaling, enhancer evolution
Website:
http://sitemaker.umich.edu/barolo
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Lorberbaum DS, Ramos AI, Peterson KA, Carpenter BS, Parker DS, De S, Hillers LE, Blake VM, Nishi Y, McFarlane MR, Chiang AC, Kassis JA, Allen BL, McMahon AP, Barolo S. An ancient yet flexible cis-regulatory architecture allows localized Hedgehog tuning by patched/Ptch1. Elife. 5. PMID 27146892 DOI: 10.7554/Elife.13550  0.776
2016 Lorberbaum DS, Ramos AI, Peterson KA, Carpenter BS, Parker DS, De S, Hillers LE, Blake VM, Nishi Y, McFarlane MR, Chiang AC, Kassis JA, Allen BL, McMahon AP, Barolo S. Author response: An ancient yet flexible cis-regulatory architecture allows localized Hedgehog tuning by patched/Ptch1 Elife. DOI: 10.7554/Elife.13550.030  0.7
2015 Gurdziel K, Lorberbaum DS, Udager AM, Song JY, Richards N, Parker DS, Johnson LA, Allen BL, Barolo S, Gumucio DL. Identification and Validation of Novel Hedgehog-Responsive Enhancers Predicted by Computational Analysis of Ci/Gli Binding Site Density. Plos One. 10: e0145225. PMID 26710299 DOI: 10.1371/Journal.Pone.0145225  0.795
2015 Lorberbaum DS, Barolo S. Enhancers: holding out for the right promoter. Current Biology : Cb. 25: R290-3. PMID 25829016 DOI: 10.1016/j.cub.2015.01.039  0.779
2014 Blake VM, Barolo S. Genome evolution: How sister genes grow apart. Current Biology : Cb. 24: R695-7. PMID 25093562 DOI: 10.1016/j.cub.2014.06.049  0.65
2013 Lorberbaum DS, Barolo S. Gene regulation: when analog beats digital. Current Biology : Cb. 23: R1054-6. PMID 24309285 DOI: 10.1016/j.cub.2013.10.004  0.788
2013 Ramos AI, Barolo S. Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130018. PMID 24218631 DOI: 10.1098/Rstb.2013.0018  0.773
2012 Ramos AI, Barolo S. Evolution of gene regulation: hybrid networks breed diversity. Current Biology : Cb. 22: R1009-11. PMID 23218008 DOI: 10.1016/J.Cub.2012.10.026  0.703
2012 White MA, Parker DS, Barolo S, Cohen BA. A model of spatially restricted transcription in opposing gradients of activators and repressors. Molecular Systems Biology. 8: 614. PMID 23010997 DOI: 10.1038/Msb.2012.48  0.511
2012 Evans NC, Swanson CI, Barolo S. Sparkling insights into enhancer structure, function, and evolution. Current Topics in Developmental Biology. 98: 97-120. PMID 22305160 DOI: 10.1016/B978-0-12-386499-4.00004-5  0.835
2012 Barolo S. Shadow enhancers: frequently asked questions about distributed cis-regulatory information and enhancer redundancy. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 135-41. PMID 22083793 DOI: 10.1002/bies.201100121  0.446
2011 Swanson CI, Schwimmer DB, Barolo S. Rapid evolutionary rewiring of a structurally constrained eye enhancer. Current Biology : Cb. 21: 1186-96. PMID 21737276 DOI: 10.1016/j.cub.2011.05.056  0.819
2011 Parker DS, White MA, Ramos AI, Cohen BA, Barolo S. The cis-regulatory logic of Hedgehog gradient responses: key roles for gli binding affinity, competition, and cooperativity. Science Signaling. 4: ra38. PMID 21653228 DOI: 10.1126/Scisignal.2002077  0.785
2011 Strom AR, Barolo S. Using the game of Mastermind to teach, practice, and discuss scientific reasoning skills. Plos Biology. 9: e1000578. PMID 21267056 DOI: 10.1371/journal.pbio.1000578  0.593
2011 Ramos A, Parker D, Barolo S. Cooperative repression is essential to interpret the Hedgehog gradient Developmental Biology. 356: 265-266. DOI: 10.1016/J.Ydbio.2011.05.520  0.708
2011 Evans N, Strom A, Barolo S. Long range transcriptional regulation in the developing eye Developmental Biology. 356: 262. DOI: 10.1016/J.Ydbio.2011.05.506  0.759
2010 Swanson CI, Evans NC, Barolo S. Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer. Developmental Cell. 18: 359-70. PMID 20230745 DOI: 10.1016/j.devcel.2009.12.026  0.819
2008 Liu YI, Chang MV, Li HE, Barolo S, Chang JL, Blauwkamp TA, Cadigan KM. The chromatin remodelers ISWI and ACF1 directly repress Wingless transcriptional targets. Developmental Biology. 323: 41-52. PMID 18786525 DOI: 10.1016/J.Ydbio.2008.08.011  0.726
2008 Johnson LA, Zhao Y, Golden K, Barolo S. Reverse-engineering a transcriptional enhancer: a case study in Drosophila. Tissue Engineering. Part A. 14: 1549-59. PMID 18687053 DOI: 10.1089/ten.tea.2008.0074  0.562
2008 Chang JL, Chang MV, Barolo S, Cadigan KM. Regulation of the feedback antagonist naked cuticle by Wingless signaling. Developmental Biology. 321: 446-54. PMID 18585374 DOI: 10.1016/J.Ydbio.2008.05.551  0.729
2008 Swanson CI, Hinrichs T, Johnson LA, Zhao Y, Barolo S. A directional recombination cloning system for restriction- and ligation-free construction of GFP, DsRed, and lacZ transgenic Drosophila reporters. Gene. 408: 180-6. PMID 18077106 DOI: 10.1016/j.gene.2007.11.003  0.776
2007 Tsai YC, Yao JG, Chen PH, Posakony JW, Barolo S, Kim J, Sun YH. Upd/Jak/STAT signaling represses wg transcription to allow initiation of morphogenetic furrow in Drosophila eye development. Developmental Biology. 306: 760-71. PMID 17498684 DOI: 10.1016/j.ydbio.2007.04.011  0.7
2006 Barolo S. Transgenic Wnt/TCF pathway reporters: all you need is Lef? Oncogene. 25: 7505-11. PMID 17143294 DOI: 10.1038/sj.onc.1210057  0.469
2006 Sun X, Barolo S, Bilder D, Montgomery M, Sinha N. Emerging from the fog: hypotheses and paradigms in developmental biology--the Society for Developmental Biology 2005 Annual Meeting Report. Developmental Biology. 289: 273-82. PMID 16337185 DOI: 10.1016/J.Ydbio.2005.10.039  0.343
2006 Ference PC, Barolo S. Regulation of dppD—A Hedgehog-regulated enhancer in the Drosophila wing imaginal disc Developmental Biology. 295: 376. DOI: 10.1016/J.YDBIO.2006.04.155  0.453
2005 Castro B, Barolo S, Bailey AM, Posakony JW. Lateral inhibition in proneural clusters: cis-regulatory logic and default repression by Suppressor of Hairless. Development (Cambridge, England). 132: 3333-44. PMID 15975935 DOI: 10.1242/dev.01920  0.761
2004 Barolo S, Castro B, Posakony JW. New Drosophila transgenic reporters: insulated P-element vectors expressing fast-maturing RFP. Biotechniques. 36: 436-40, 442. PMID 15038159 DOI: 10.2144/04363St03  0.628
2002 Barolo S, Stone T, Bang AG, Posakony JW. Default repression and Notch signaling: Hairless acts as an adaptor to recruit the corepressors Groucho and dCtBP to Suppressor of Hairless. Genes & Development. 16: 1964-76. PMID 12154126 DOI: 10.1101/gad.987402  0.748
2002 Barolo S, Posakony JW. Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling. Genes & Development. 16: 1167-81. PMID 12023297 DOI: 10.1101/gad.976502  0.717
2000 Barolo S, Walker RG, Polyanovsky AD, Freschi G, Keil T, Posakony JW. A notch-independent activity of suppressor of hairless is required for normal mechanoreceptor physiology. Cell. 103: 957-69. PMID 11136980 DOI: 10.1016/S0092-8674(00)00198-7  0.692
2000 Barolo S, Carver LA, Posakony JW. GFP and beta-galactosidase transformation vectors for promoter/enhancer analysis in Drosophila. Biotechniques. 29: 726, 728, 730, 732. PMID 11056799 DOI: 10.2144/00294Bm10  0.606
1998 Nibu Y, Zhang H, Bajor E, Barolo S, Small S, Levine M. dCtBP mediates transcriptional repression by Knirps, Krüppel and Snail in the Drosophila embryo. The Embo Journal. 17: 7009-20. PMID 9843507 DOI: 10.1093/Emboj/17.23.7009  0.755
1997 Barolo S, Levine M. hairy mediates dominant repression in the Drosophila embryo. The Embo Journal. 16: 2883-91. PMID 9184232 DOI: 10.1093/Emboj/16.10.2883  0.613
1996 Zhou J, Barolo S, Szymanski P, Levine M. The Fab-7 element of the bithorax complex attenuates enhancer-promoter interactions in the Drosophila embryo. Genes & Development. 10: 3195-201. PMID 8985187 DOI: 10.1101/Gad.10.24.3195  0.777
1996 Arnosti DN, Gray S, Barolo S, Zhou J, Levine M. The gap protein knirps mediates both quenching and direct repression in the Drosophila embryo. The Embo Journal. 15: 3659-66. PMID 8670869  0.799
1996 Arnosti DN, Barolo S, Levine M, Small S. The eve stripe 2 enhancer employs multiple modes of transcriptional synergy. Development (Cambridge, England). 122: 205-14. PMID 8565831  0.805
1996 Arnosti DN, Gray S, Barolo S, Zhou J, Levine M. The gap protein knirps mediates both quenching and direct repression in the Drosophila embryo. The Embo Journal. 15: 3659-3666. DOI: 10.1002/J.1460-2075.1996.Tb00735.X  0.822
1995 Gray S, Cai H, Barolo S, Levine M. Transcriptional repression in the Drosophila embryo. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 349: 257-62. PMID 8577836 DOI: 10.1098/Rstb.1995.0111  0.69
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