Maxwell L. Neal, Ph.D. - Publications

2010 University of Washington, Seattle, Seattle, WA 
biomedical and health informatics

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Neal ML, Thompson CT, Kim KG, James RC, Cook DL, Carlson BE, Gennari JH. SemGen: a tool for semantics-based annotation and composition of biosimulation models. Bioinformatics (Oxford, England). PMID 30256901 DOI: 10.1093/bioinformatics/bty829  0.68
2016 Neal ML, Gennari JH, Cook DL. Qualitative causal analyses of biosimulation models. Ceur Workshop Proceedings. 1747. PMID 28804276  0.68
2015 Neal ML, Carlson BE, Thompson CT, James RC, Kim KG, Tran K, Crampin EJ, Cook DL, Gennari JH. Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases. Plos One. 10: e0145621. PMID 26716837 DOI: 10.1371/journal.pone.0145621  0.68
2015 Rockne RC, Trister AD, Jacobs J, Hawkins-Daarud AJ, Neal ML, Hendrickson K, Mrugala MM, Rockhill JK, Kinahan P, Krohn KA, Swanson KR. A patient-specific computational model of hypoxia-modulated radiation resistance in glioblastoma using 18F-FMISO-PET. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 25540239 DOI: 10.1098/rsif.2014.1174  0.68
2014 Baldock AL, Ahn S, Rockne R, Johnston S, Neal M, Corwin D, Clark-Swanson K, Sterin G, Trister AD, Malone H, Ebiana V, Sonabend AM, Mrugala M, Rockhill JK, Silbergeld DL, et al. Patient-specific metrics of invasiveness reveal significant prognostic benefit of resection in a predictable subset of gliomas. Plos One. 9: e99057. PMID 25350742 DOI: 10.1371/journal.pone.0099057  0.68
2014 Neal ML, Cooling MT, Smith LP, Thompson CT, Sauro HM, Carlson BE, Cook DL, Gennari JH. A reappraisal of how to build modular, reusable models of biological systems. Plos Computational Biology. 10: e1003849. PMID 25275523 DOI: 10.1371/journal.pcbi.1003849  0.68
2014 Baldock AL, Yagle K, Born DE, Ahn S, Trister AD, Neal M, Johnston SK, Bridge CA, Basanta D, Scott J, Malone H, Sonabend AM, Canoll P, Mrugala MM, Rockhill JK, et al. Invasion and proliferation kinetics in enhancing gliomas predict IDH1 mutation status. Neuro-Oncology. 16: 779-86. PMID 24832620 DOI: 10.1093/neuonc/nou027  0.68
2014 Neal ML, Galdzicki M, Gallimore JT, Sauro HM. A C library for retrieving specific reactions from the BioModels database. Bioinformatics (Oxford, England). 30: 129-30. PMID 24078714 DOI: 10.1093/bioinformatics/btt567  0.68
2014 Sodt R, Rockne R, Neal ML, Swanson KR. Quantifying the role of anisotropic invasion in human glioblastoma Computational Surgery and Dual Training: Computing, Robotics and Imaging. 315-330. DOI: 10.1007/978-1-4614-8648-0_20  0.68
2013 Butterworth E, Jardine BE, Raymond GM, Neal ML, Bassingthwaighte JB. JSim, an open-source modeling system for data analysis. F1000research. 2: 288. PMID 24555116 DOI: 10.12688/f1000research.2-288.v1  0.68
2013 Cook DL, Neal ML, Bookstein FL, Gennari JH. Ontology of physics for biology: representing physical dependencies as a basis for biological processes. Journal of Biomedical Semantics. 4: 41. PMID 24295137 DOI: 10.1186/2041-1480-4-41  0.68
2013 Cook DL, Neal ML, Hoehndorf R, Gkoutos GV, Gennari JH. Representing physiological processes and their participants with PhysioMaps. Journal of Biomedical Semantics. 4: S2. PMID 23735231 DOI: 10.1186/2041-1480-4-S1-S2  0.68
2013 Baldock AL, Rockne RC, Boone AD, Neal ML, Hawkins-Daarud A, Corwin DM, Bridge CA, Guyman LA, Trister AD, Mrugala MM, Rockhill JK, Swanson KR. From patient-specific mathematical neuro-oncology to precision medicine. Frontiers in Oncology. 3: 62. PMID 23565501 DOI: 10.3389/fonc.2013.00062  0.68
2013 Neal ML, Trister AD, Ahn S, Baldock A, Bridge CA, Guyman L, Lange J, Sodt R, Cloke T, Lai A, Cloughesy TF, Mrugala MM, Rockhill JK, Rockne RC, Swanson KR. Response classification based on a minimal model of glioblastoma growth is prognostic for clinical outcomes and distinguishes progression from pseudoprogression. Cancer Research. 73: 2976-86. PMID 23400596 DOI: 10.1158/0008-5472.CAN-12-3588  0.68
2013 Neal ML, Trister AD, Cloke T, Sodt R, Ahn S, Baldock AL, Bridge CA, Lai A, Cloughesy TF, Mrugala MM, Rockhill JK, Rockne RC, Swanson KR. Discriminating survival outcomes in patients with glioblastoma using a simulation-based, patient-specific response metric. Plos One. 8: e51951. PMID 23372647 DOI: 10.1371/journal.pone.0051951  0.68
2013 Neal ML, Cook DL, Gennari JH. An OWL knowledge base for classifying and querying collections of physiological models: A prototype human physiome Ceur Workshop Proceedings. 1060: 16-21.  0.68
2012 Beard DA, Neal ML, Tabesh-Saleki N, Thompson CT, Bassingthwaighte JB, Shimoyama M, Carlson BE. Multiscale modeling and data integration in the virtual physiological rat project. Annals of Biomedical Engineering. 40: 2365-78. PMID 22805979 DOI: 10.1007/s10439-012-0611-7  0.68
2011 Gennari JH, Neal ML, Galdzicki M, Cook DL. Multiple ontologies in action: composite annotations for biosimulation models. Journal of Biomedical Informatics. 44: 146-54. PMID 20601121 DOI: 10.1016/j.jbi.2010.06.007  0.68
2011 Cook DL, Galdzicki M, Neal ML, Mejino JLV, Gennari JH. HeartCyc, a cardiac cycle process ontology based in the ontology of physics for biology Ceur Workshop Proceedings. 833: 41-46.  0.68
2010 Neal ML, Kerckhoffs R. Current progress in patient-specific modeling. Briefings in Bioinformatics. 11: 111-26. PMID 19955236 DOI: 10.1093/bib/bbp049  0.68
2010 Neal ML. Patient-specific modeling for critical care Patient-Specific Modeling of the Cardiovascular System: Technology-Driven Personalized Medicine. 81-94. DOI: 10.1007/978-1-4419-6691-9_5  0.68
2009 Cook DL, Mejino JL, Neal ML, Gennari JH. Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 2791-4. PMID 19964601 DOI: 10.1109/IEMBS.2009.5333830  0.68
2009 Neal ML, Gennari JH, Arts T, Cook DL. Advances in semantic representation for multiscale biosimulation: a case study in merging models. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 304-15. PMID 19209710  0.68
2008 Cook DL, Mejino JL, Neal ML, Gennari JH. Bridging biological ontologies and biosimulation: the ontology of physics for biology. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 136-40. PMID 18999003  0.68
2008 Gennari JH, Neal ML, Carlson BE, Cook DL. Integration of multi-scale biosimulation models via light-weight semantics. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 414-25. PMID 18229704  0.68
2007 Neal ML, Bassingthwaighte JB. Subject-specific model estimation of cardiac output and blood volume during hemorrhage. Cardiovascular Engineering (Dordrecht, Netherlands). 7: 97-120. PMID 17846886 DOI: 10.1007/s10558-007-9035-7  0.68
2007 Kerckhoffs RC, Neal ML, Gu Q, Bassingthwaighte JB, Omens JH, McCulloch AD. Coupling of a 3D finite element model of cardiac ventricular mechanics to lumped systems models of the systemic and pulmonic circulation. Annals of Biomedical Engineering. 35: 1-18. PMID 17111210 DOI: 10.1007/s10439-006-9212-7  0.68
2006 Rubin DL, Grossman D, Neal M, Cook DL, Bassingthwaighte JB, Musen MA. Ontology-based representation of simulation models of physiology. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 664-8. PMID 17238424  0.68
2003 Lamanna JC, Neal M, Xu K, Haxhiu MA. Differential expression of intracellular acidosis in rat brainstem regions in response to hypercapnic ventilation. Advances in Experimental Medicine and Biology. 536: 407-13. PMID 14635694  0.68
2002 Aliev G, Seyidova D, Neal ML, Shi J, Lamb BT, Siedlak SL, Vinters HV, Head E, Perry G, Lamanna JC, Friedland RP, Cotman CW. Atherosclerotic lesions and mitochondria DNA deletions in brain microvessels as a central target for the development of human AD and AD-like pathology in aged transgenic mice. Annals of the New York Academy of Sciences. 977: 45-64. PMID 12480733  0.68
2002 Aliev G, Smith MA, Seyidova D, Neal ML, Shi J, Loizidou M, Turmaine M, Friedland RP, Taylor I, Burnstock G, Perry G, Lamanna JC. Increased expression of NOS and ET-1 immunoreactivity in human colorectal metastatic liver tumours is associated with selective depression of constitutive NOS immunoreactivity in vessel endothelium. Journal of Submicroscopic Cytology and Pathology. 34: 37-50. PMID 11989855  0.68
2002 Aliev G, Smith MA, Seyidov D, Neal ML, Lamb BT, Nunomura A, Gasimov EK, Vinters HV, Perry G, LaManna JC, Friedland RP. The role of oxidative stress in the pathophysiology of cerebrovascular lesions in Alzheimer's disease. Brain Pathology (Zurich, Switzerland). 12: 21-35. PMID 11770899  0.68
2001 Aliev G, Seyidov D, Neal ML, Shi J, Vigan T, Hernandez A, Folco G, Soas AH, Zimina TV, Smith MA, Perry G, Lamanna JC, Friedland RP. The effect of agonists and antagonists on the morphology of non-transformed human smooth muscle cell in vitro. Journal of Submicroscopic Cytology and Pathology. 33: 141-9. PMID 11686395  0.68
2001 Aliev G, Smith MA, Turmaine M, Neal ML, Zimina TV, Friedland RP, Perry G, LaManna JC, Burnstock G. Atherosclerotic lesions are associated with increased immunoreactivity for inducible nitric oxide synthase and endothelin-1 in thoracic aortic intimal cells of hyperlipidemic Watanabe rabbits. Experimental and Molecular Pathology. 71: 40-54. PMID 11502096 DOI: 10.1006/exmp.2001.2380  0.68
2000 Neal ML, Hannibal JT. Paleoecologic and taxonomic implications of Sphenothallus and Sphenothallus-like specimens from Ohio and areas adjacent to Ohio Journal of Paleontology. 74: 369-380.  0.68
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