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John Eargle, Ph.D. - Publications

Affiliations: 
2010 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Prediction of Protein Structure and Function
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Vanwart AT, Eargle J, Luthey-Schulten Z, Amaro RE. Exploring residue component contributions to dynamical network models of allostery. Journal of Chemical Theory and Computation. 8: 2949-2961. PMID 23139645 DOI: 10.1021/Ct300377A  0.694
2012 Eargle J, Luthey-Schulten Z. NetworkView: 3D display and analysis of protein·RNA interaction networks. Bioinformatics (Oxford, England). 28: 3000-1. PMID 22982572 DOI: 10.1093/Bioinformatics/Bts546  0.621
2012 Chen K, Eargle J, Lai J, Kim H, Abeysirigunawardena S, Mayerle M, Woodson S, Ha T, Luthey-Schulten Z. Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations. The Journal of Physical Chemistry. B. 116: 6819-31. PMID 22458631 DOI: 10.1021/Jp212614B  0.64
2012 Kim H, Abeysirigunawardena S, Mayerle M, Ragunathan K, Chen K, Eargle J, Luthey-Schulten Z, Woodson S, Ha T. Single Molecule Views of the Ribosome Assembly Biophysical Journal. 102: 645a. DOI: 10.1016/J.Bpj.2011.11.3512  0.636
2010 Chen K, Eargle J, Sarkar K, Gruebele M, Luthey-Schulten Z. Functional role of ribosomal signatures. Biophysical Journal. 99: 3930-40. PMID 21156135 DOI: 10.1016/J.Bpj.2010.09.062  0.636
2010 Trabuco LG, Schreiner E, Eargle J, Cornish P, Ha T, Luthey-Schulten Z, Schulten K. The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. Journal of Molecular Biology. 402: 741-60. PMID 20691699 DOI: 10.1016/J.Jmb.2010.07.056  0.612
2010 Black Pyrkosz A, Eargle J, Sethi A, Luthey-Schulten Z. Exit strategies for charged tRNA from GluRS. Journal of Molecular Biology. 397: 1350-71. PMID 20156451 DOI: 10.1016/J.Jmb.2010.02.003  0.521
2010 Alexander RW, Eargle J, Luthey-Schulten Z. Experimental and computational determination of tRNA dynamics. Febs Letters. 584: 376-86. PMID 19932098 DOI: 10.1016/J.Febslet.2009.11.061  0.637
2009 Sethi A, Eargle J, Black AA, Luthey-Schulten Z. Dynamical networks in tRNA:protein complexes. Proceedings of the National Academy of Sciences of the United States of America. 106: 6620-5. PMID 19351898 DOI: 10.1073/Pnas.0810961106  0.707
2008 Eargle J, Black AA, Sethi A, Trabuco LG, Luthey-Schulten Z. Dynamics of Recognition between tRNA and elongation factor Tu. Journal of Molecular Biology. 377: 1382-405. PMID 18336835 DOI: 10.1016/J.Jmb.2008.01.073  0.728
2006 Roberts E, Eargle J, Wright D, Luthey-Schulten Z. MultiSeq: unifying sequence and structure data for evolutionary analysis. Bmc Bioinformatics. 7: 382. PMID 16914055 DOI: 10.1186/1471-2105-7-382  0.674
2006 Eargle J, Luthey-Schulten Z. Visualizing the dual space of biological molecules. Computational Biology and Chemistry. 30: 219-26. PMID 16675303 DOI: 10.1016/J.Compbiolchem.2006.01.004  0.598
2006 Eargle J, Wright D, Luthey-Schulten Z. Multiple Alignment of protein structures and sequences for VMD. Bioinformatics (Oxford, England). 22: 504-6. PMID 16339280 DOI: 10.1093/Bioinformatics/Bti825  0.598
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