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Daniel R. Hochbaum, Ph.D. - Publications

Affiliations: 
2014 Engineering and Applied Sciences Harvard University, Cambridge, MA, United States 
Area:
tools to study biomolecules
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23/41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lawton RI, Sabatini BL, Hochbaum DR. Longevity, demographic characteristics, and socio-economic status are linked to triiodothyronine levels in the general population. Proceedings of the National Academy of Sciences of the United States of America. 121: e2308652121. PMID 38175866 DOI: 10.1073/pnas.2308652121  0.443
2023 Hochbaum DR, Dubinsky AC, Farnsworth HC, Hulshof L, Kleinberg G, Urke A, Wang W, Hakim R, Robertson K, Park C, Solberg A, Yang Y, Baynard C, Nadaf NM, Beron CC, et al. Thyroid hormone rewires cortical circuits to coordinate body-wide metabolism and exploratory drive. Biorxiv : the Preprint Server For Biology. PMID 37609206 DOI: 10.1101/2023.08.10.552874  0.675
2023 Lawton RI, Sabatini BL, Hochbaum DR. Sub-clinical triiodothyronine levels predict health, demographic, and socioeconomic outcomes. Biorxiv : the Preprint Server For Biology. PMID 36993428 DOI: 10.1101/2023.03.09.531775  0.444
2022 Cortopassi MD, Ramachandran D, Rubio WB, Hochbaum D, Sabatini BL, Banks AS. Analysis of Thermogenesis Experiments with CalR. Methods in Molecular Biology (Clifton, N.J.). 2448: 43-72. PMID 35167089 DOI: 10.1007/978-1-0716-2087-8_3  0.437
2021 Boulting GL, Durresi E, Ataman B, Sherman MA, Mei K, Harmin DA, Carter AC, Hochbaum DR, Granger AJ, Engreitz JM, Hrvatin S, Blanchard MR, Yang MG, Griffith EC, Greenberg ME. Activity-dependent regulome of human GABAergic neurons reveals new patterns of gene regulation and neurological disease heritability. Nature Neuroscience. PMID 33542524 DOI: 10.1038/s41593-020-00786-1  0.665
2020 Wallace ML, Huang KW, Hochbaum D, Hyun M, Radeljic G, Sabatini BL. Anatomical and single-cell transcriptional profiling of the murine habenular complex. Elife. 9. PMID 32043968 DOI: 10.7554/Elife.51271  0.72
2020 Wallace ML, Huang KW, Hochbaum D, Hyun M, Radeljic G, Sabatini BL. Author response: Anatomical and single-cell transcriptional profiling of the murine habenular complex Elife. DOI: 10.7554/Elife.51271.Sa2  0.698
2019 Mandelbaum G, Taranda J, Haynes TM, Hochbaum DR, Huang KW, Hyun M, Umadevi Venkataraju K, Straub C, Wang W, Robertson K, Osten P, Sabatini BL. Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus. Neuron. PMID 30905392 DOI: 10.1016/J.Neuron.2019.02.035  0.64
2018 Hrvatin S, Hochbaum DR, Nagy MA, Cicconet M, Robertson K, Cheadle L, Zilionis R, Ratner A, Borges-Monroy R, Klein AM, Sabatini BL, Greenberg ME. Publisher Correction: Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nature Neuroscience. PMID 29752482 DOI: 10.1038/S41593-018-0112-6  0.581
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, et al. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29520042 DOI: 10.1038/S41589-018-0023-6  0.506
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29483642 DOI: 10.1038/S41589-018-0004-9  0.6
2017 Hrvatin S, Hochbaum DR, Nagy MA, Cicconet M, Robertson K, Cheadle L, Zilionis R, Ratner A, Borges-Monroy R, Klein AM, Sabatini BL, Greenberg ME. Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nature Neuroscience. PMID 29230054 DOI: 10.1038/S41593-017-0029-5  0.627
2017 Stroud H, Su SC, Hrvatin S, Greben AW, Renthal W, Boxer LD, Nagy MA, Hochbaum DR, Kinde B, Gabel HW, Greenberg ME. Early-Life Gene Expression in Neurons Modulates Lasting Epigenetic States. Cell. PMID 29056337 DOI: 10.1016/J.Cell.2017.09.047  0.331
2016 Cho YK, Zheng G, Augustine GJ, Hochbaum D, Cohen A, Knöpfel T, Pisanello F, Pavone FS, Vellekoop IM, Booth MJ, Hu S, Zhu J, Chen Z, Hoshi Y. Roadmap on neurophotonics. Journal of Optics (2010). 18. PMID 28386392 DOI: 10.1088/2040-8978/18/9/093007  0.518
2014 Zou P, Zhao Y, Douglass AD, Hochbaum DR, Brinks D, Werley CA, Harrison DJ, Campbell RE, Cohen AE. Bright and fast multicoloured voltage reporters via electrochromic FRET. Nature Communications. 5: 4625. PMID 25118186 DOI: 10.1038/Ncomms5625  0.63
2014 Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, Zou P, Kralj JM, Maclaurin D, Smedemark-Margulies N, Saulnier JL, Boulting GL, Straub C, Cho YK, Melkonian M, et al. All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nature Methods. 11: 825-33. PMID 24952910 DOI: 10.1038/Nmeth.3000  0.716
2014 Venkatachalam V, Brinks D, Maclaurin D, Hochbaum D, Kralj J, Cohen AE. Flash memory: photochemical imprinting of neuronal action potentials onto a microbial rhodopsin. Journal of the American Chemical Society. 136: 2529-37. PMID 24428326 DOI: 10.1021/Ja411338T  0.52
2014 Cohen AE, Hochbaum DR. Measuring membrane voltage with microbial rhodopsins. Methods in Molecular Biology (Clifton, N.J.). 1071: 97-108. PMID 24052383 DOI: 10.1007/978-1-62703-622-1_8  0.54
2014 Zhao Y, Hochbaum D, Harrison DJ, Cohen AE, Campbell RE. A Comprehensive Live Cell Screening Approach for Developing Improved Microbial Rhodopsin-Based Voltage Biosensors Biophysical Journal. 106: 415a. DOI: 10.1016/J.Bpj.2013.11.2334  0.576
2012 Kralj JM, Douglass AD, Hochbaum DR, Maclaurin D, Cohen AE. Optical recording of action potentials in mammalian neurons using a microbial rhodopsin. Nature Methods. 9: 90-5. PMID 22120467 DOI: 10.1038/Nmeth.1782  0.599
2011 Kralj JM, Hochbaum DR, Douglass AD, Cohen AE. Electrical spiking in Escherichia coli probed with a fluorescent voltage-indicating protein. Science (New York, N.Y.). 333: 345-8. PMID 21764748 DOI: 10.1126/Science.1204763  0.522
2011 Hochbaum D, Kralj J, Douglass A, Cohen A. Optogenetic Studies of Electrical Spiking in E. coli Using an Engineered Proteorhodopsin Biophysical Journal. 100: 487a. DOI: 10.1016/J.Bpj.2010.12.2858  0.509
2011 Kralj JM, Hochbaum DR, Douglass AD, Cohen AE. Development of an Optogenetic Sensor of Membrane Potential Biophysical Journal. 100: 368a. DOI: 10.1016/J.Bpj.2010.12.2195  0.554
Low-probability matches (unlikely to be authored by this person)
2005 Tanos T, Marinissen MJ, Leskow FC, Hochbaum D, Martinetto H, Gutkind JS, Coso OA. Phosphorylation of c-Fos by members of the p38 MAPK family. Role in the AP-1 response to UV light. The Journal of Biological Chemistry. 280: 18842-52. PMID 15708845 DOI: 10.1074/Jbc.M500620200  0.283
2011 Hochbaum D, Zhang Y, Stuckenholz C, Labhart P, Alexiadis V, Martin R, Knölker HJ, Fisher AL. DAF-12 regulates a connected network of genes to ensure robust developmental decisions. Plos Genetics. 7: e1002179. PMID 21814518 DOI: 10.1371/Journal.Pgen.1002179  0.277
2010 Hochbaum D, Ferguson AA, Fisher AL. Generation of transgenic C. elegans by biolistic transformation. Journal of Visualized Experiments : Jove. PMID 20811328 DOI: 10.3791/2090  0.265
2010 Hochbaum D, Barila G, Ribeiro-Neto F, Altschuler DL. Radixin assembles cAMP effectors Epac and PKA into a functional cAMP compartment: role in cAMP-dependent cell proliferation. The Journal of Biological Chemistry. 286: 859-66. PMID 21047789 DOI: 10.1074/Jbc.M110.163816  0.265
2007 Hochbaum D, Hong K, Barila G, Ribeiro-Neto F, Altschuler DL. Epac, in synergy with cAMP-dependent protein kinase (PKA), is required for cAMP-mediated mitogenesis. The Journal of Biological Chemistry. 283: 4464-8. PMID 18063584 DOI: 10.1074/Jbc.C700171200  0.262
2011 Heidel TD, Hochbaum D, Sussman JM, Singh V, Bahlke ME, Hiromi I, Lee J, Baldo MA. Reducing recombination losses in planar organic photovoltaic cells using multiple step charge separation Journal of Applied Physics. 109: 104502. DOI: 10.1063/1.3585863  0.257
2003 Hochbaum D, Tanos T, Ribeiro-Neto F, Altschuler D, Coso OA. Activation of JNK by Epac is independent of its activity as a Rap guanine nucleotide exchanger. The Journal of Biological Chemistry. 278: 33738-46. PMID 12783872 DOI: 10.1074/Jbc.M305208200  0.252
2010 Zuo H, Gandhi M, Edreira MM, Hochbaum D, Nimgaonkar VL, Zhang P, Dipaola J, Evdokimova V, Altschuler DL, Nikiforov YE. Downregulation of Rap1GAP through epigenetic silencing and loss of heterozygosity promotes invasion and progression of thyroid tumors. Cancer Research. 70: 1389-97. PMID 20124489 DOI: 10.1158/0008-5472.Can-09-2812  0.246
2002 Kovalovsky D, Refojo D, Liberman AC, Hochbaum D, Pereda MP, Coso OA, Stalla GK, Holsboer F, Arzt E. Activation and induction of NUR77/NURR1 in corticotrophs by CRH/cAMP: involvement of calcium, protein kinase A, and MAPK pathways. Molecular Endocrinology (Baltimore, Md.). 16: 1638-51. PMID 12089357 DOI: 10.1210/Mend.16.7.0863  0.243
2009 Edreira MM, Li S, Hochbaum D, Wong S, Gorfe AA, Ribeiro-Neto F, Woods VL, Altschuler DL. Phosphorylation-induced conformational changes in Rap1b: allosteric effects on switch domains and effector loop. The Journal of Biological Chemistry. 284: 27480-6. PMID 19651783 DOI: 10.1074/Jbc.M109.011312  0.233
2015 Casa AJ, Hochbaum D, Sreekumar S, Oesterreich S, Lee AV. The estrogen receptor alpha nuclear localization sequence is critical for fulvestrant-induced degradation of the receptor. Molecular and Cellular Endocrinology. PMID 26272024 DOI: 10.1016/J.Mce.2015.08.007  0.221
2018 Espiritu EB, Crunk AE, Bais A, Hochbaum D, Cervino AS, Phua YL, Butterworth MB, Goto T, Ho J, Hukriede NA, Cirio MC. The Lhx1-Ldb1 complex interacts with Furry to regulate microRNA expression during pronephric kidney development. Scientific Reports. 8: 16029. PMID 30375416 DOI: 10.1038/S41598-018-34038-X  0.137
2023 Cervino AS, Collodel MG, Lopez IA, Roa C, Hochbaum D, Hukriede NA, Cirio MC. Xenopus Ssbp2 is required for embryonic pronephros morphogenesis and terminal differentiation. Scientific Reports. 13: 16671. PMID 37794075 DOI: 10.1038/s41598-023-43662-1  0.134
2023 Cervino AS, Collodel MG, Lopez IA, Hochbaum D, Hukriede NA, Cirio MC. Ssbp2 is required for embryonic pronephros morphogenesis and terminal differentiation. Biorxiv : the Preprint Server For Biology. PMID 37090653 DOI: 10.1101/2023.04.15.537039  0.131
2023 Godoy LF, Hochbaum D. Transcriptional and spatiotemporal regulation of the dauer program. Transcription. 1-22. PMID 36951297 DOI: 10.1080/21541264.2023.2190295  0.131
2022 Jofré DM, Hoffman DK, Cervino AS, Hahn GM, Grundy M, Yun S, Amrit FRG, Stolz DB, Godoy LF, Salvatore E, Rossi FA, Ghazi A, Cirio MC, Yanowitz JL, Hochbaum D. The CHARGE syndrome ortholog CHD-7 regulates TGF-β pathways in . Proceedings of the National Academy of Sciences of the United States of America. 119: e2109508119. PMID 35394881 DOI: 10.1073/pnas.2109508119  0.066
1977 Hochbaum DR, Moskowitz SE, Wirtschafter JD. A quantitative analysis of astigmatism induced by pterygium. Journal of Biomechanics. 10: 735-46. PMID 606720 DOI: 10.1016/0021-9290(77)90088-4  0.046
2015 Reeder A, Attar M, Nazario L, Bathula C, Zhang A, Hochbaum D, Roy E, Cooper KL, Oesterreich S, Davidson NE, Neumann CA, Flint MS. Stress hormones reduce the efficacy of paclitaxel in triple negative breast cancer through induction of DNA damage. British Journal of Cancer. 112: 1461-70. PMID 25880007 DOI: 10.1038/Bjc.2015.133  0.022
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