Arlo Randall, Ph.D. - Publications

2008 University of California, Irvine, Irvine, CA 

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Chakraborty S, Randall A, Vickers TJ, Molina D, Harro CD, DeNearing B, Brubaker J, Sack DA, Bourgeois AL, Felgner PL, Liang X, Mani S, Wenzel H, Townsend RR, Gilmore PE, et al. Interrogation of a live-attenuated enterotoxigenic vaccine highlights features unique to wild-type infection. Npj Vaccines. 4: 37. PMID 31482013 DOI: 10.1038/s41541-019-0131-7  0.44
2019 Obiero JM, Campo JJ, Scholzen A, Randall A, Bijker EM, Roestenberg M, Hermsen CC, Teng A, Jain A, Davies DH, Sauerwein RW, Felgner PL. Antibody Biomarkers Associated with Sterile Protection Induced by Controlled Human Malaria Infection under Chloroquine Prophylaxis. Msphere. 4. PMID 30787114 DOI: 10.1128/mSphereDirect.00027-19  0.44
2018 Chakraborty S, Randall A, Vickers TJ, Molina D, Harro CD, DeNearing B, Brubaker J, Sack DA, Bourgeois AL, Felgner PL, Liang X, Mani S, Wenzel H, Townsend RR, Gilmore PE, et al. Human experimental challenge with enterotoxigenic Escherichia coli elicits immune responses to canonical and novel antigens relevant to vaccine development. The Journal of Infectious Diseases. PMID 29800314 DOI: 10.1093/infdis/jiy312  0.44
2017 Lessa-Aquino C, Lindow JC, Randall A, Wunder E, Pablo J, Nakajima R, Jasinskas A, Cruz JS, Damião AO, Nery N, Ribeiro GS, Costa F, Hagan JE, Reis MG, Ko AI, et al. Distinct antibody responses of patients with mild and severe leptospirosis determined by whole proteome microarray analysis. Plos Neglected Tropical Diseases. 11: e0005349. PMID 28141801 DOI: 10.1371/journal.pntd.0005349  0.44
2016 Nakajima R, Escudero R, Molina DM, Rodríguez-Vargas M, Randall A, Jasinskas A, Pablo J, Felgner PL, AuCoin D, Anda P, Davies DH. Towards development of improved serodiagnostics for tularemia using Francisella tularensis proteome microarrays. Journal of Clinical Microbiology. PMID 27098957 DOI: 10.1128/JCM.02784-15  1
2015 King CL, Davies DH, Felgner P, Baum E, Jain A, Randall A, Tetteh K, Drakeley CJ, Greenhouse B. Biosignatures of Exposure/Transmission and Immunity. The American Journal of Tropical Medicine and Hygiene. PMID 26259938 DOI: 10.4269/ajtmh.15-0037  1
2015 Dent AE, Nakajima R, Liang L, Baum E, Moormann AM, Sumba PO, Vulule J, Babineau D, Randall A, Davies DH, Felgner PL, Kazura JW. Plasmodium falciparum Protein Microarray Antibody Profiles Correlate With Protection From Symptomatic Malaria in Kenya. The Journal of Infectious Diseases. PMID 25883384 DOI: 10.1093/infdis/jiv224  1
2015 Baum E, Sattabongkot J, Sirichaisinthop J, Kiattibutr K, Davies DH, Jain A, Lo E, Lee MC, Randall AZ, Molina DM, Liang X, Cui L, Felgner PL, Yan G. Submicroscopic and asymptomatic Plasmodium falciparum and Plasmodium vivax infections are common in western Thailand - molecular and serological evidence. Malaria Journal. 14: 95. PMID 25849211 DOI: 10.1186/s12936-015-0611-9  1
2014 Patton DL, Teng A, Randall A, Liang X, Felgner PL, de la Maza LM. Whole genome identification of C. trachomatis immunodominant antigens after genital tract infections and effect of antibiotic treatment of pigtailed macaques. Journal of Proteomics. 108: 99-109. PMID 24862987 DOI: 10.1016/j.jprot.2014.05.009  1
2014 Nagata K, Randall A, Baldi P. Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures. Bioinformatics (Oxford, England). 30: 1681-9. PMID 24574112 DOI: 10.1093/bioinformatics/btu106  1
2013 Feher VA, Randall A, Baldi P, Bush RM, de la Maza LM, Amaro RE. A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins. Plos One. 8: e68934. PMID 23935908 DOI: 10.1371/journal.pone.0068934  1
2013 Baum E, Randall AZ, Zeller M, Barbour AG. Inferring epitopes of a polymorphic antigen amidst broadly cross-reactive antibodies using protein microarrays: a study of OspC proteins of Borrelia burgdorferi. Plos One. 8: e67445. PMID 23826301 DOI: 10.1371/journal.pone.0067445  1
2012 Ren D, Dalmau M, Randall A, Shindel MM, Baldi P, Wang SW. Biomimetic Design of Protein Nanomaterials for Hydrophobic Molecular Transport. Advanced Functional Materials. 22: 3170-3180. PMID 23526705 DOI: 10.1002/adfm.201200052  1
2012 Lee SH, Hoshino Y, Randall A, Zeng Z, Baldi P, Doong RA, Shea KJ. Engineered synthetic polymer nanoparticles as IgG affinity ligands. Journal of the American Chemical Society. 134: 15765-72. PMID 22924890 DOI: 10.1021/ja303612d  1
2012 Kao A, Randall A, Yang Y, Patel VR, Kandur W, Guan S, Rychnovsky SD, Baldi P, Huang L. Mapping the structural topology of the yeast 19S proteasomal regulatory particle using chemical cross-linking and probabilistic modeling. Molecular & Cellular Proteomics : McP. 11: 1566-77. PMID 22550050 DOI: 10.1074/mcp.M112.018374  1
2012 Srikrishnan S, Randall A, Baldi P, Da Silva NA. Rationally selected single-site mutants of the Thermoascus aurantiacus endoglucanase increase hydrolytic activity on cellulosic substrates. Biotechnology and Bioengineering. 109: 1595-9. PMID 22180009 DOI: 10.1002/bit.24414  1
2012 Nagata K, Randall A, Baldi P. SIDEpro: a novel machine learning approach for the fast and accurate prediction of side-chain conformations. Proteins. 80: 142-53. PMID 22072531 DOI: 10.1002/prot.23170  1
2011 Andronico A, Randall A, Benz RW, Baldi P. Data-driven high-throughput prediction of the 3-D structure of small molecules: review and progress. Journal of Chemical Information and Modeling. 51: 760-76. PMID 21417267 DOI: 10.1021/ci100223t  1
2011 Clemens K, Larsen L, Zhang M, Kuznetsov Y, Bilanchone V, Randall A, Harned A, Dasilva R, Nagashima K, McPherson A, Baldi P, Sandmeyer S. The TY3 Gag3 spacer controls intracellular condensation and uncoating. Journal of Virology. 85: 3055-66. PMID 21270167 DOI: 10.1128/JVI.01055-10  1
2011 Kao A, Chiu CL, Vellucci D, Yang Y, Patel VR, Guan S, Randall A, Baldi P, Rychnovsky SD, Huang L. Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes. Molecular & Cellular Proteomics : McP. 10: M110.002212. PMID 20736410 DOI: 10.1074/mcp.M110.002212  1
2010 Magnan CN, Zeller M, Kayala MA, Vigil A, Randall A, Felgner PL, Baldi P. High-throughput prediction of protein antigenicity using protein microarray data. Bioinformatics (Oxford, England). 26: 2936-43. PMID 20934990 DOI: 10.1093/bioinformatics/btq551  1
2010 Guzmán DL, Randall A, Baldi P, Guan Z. Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability. Proceedings of the National Academy of Sciences of the United States of America. 107: 1989-94. PMID 20080695 DOI: 10.1073/pnas.0905796107  1
2010 Randall A, Baldi P. Transmembrane beta-barrel protein structure prediction Structural Bioinformatics of Membrane Proteins. 83-102. DOI: 10.1007/978-3-7091-0045-5_5  1
2009 Magnan CN, Randall A, Baldi P. SOLpro: accurate sequence-based prediction of protein solubility. Bioinformatics (Oxford, England). 25: 2200-7. PMID 19549632 DOI: 10.1093/bioinformatics/btp386  1
2008 Randall A, Baldi P. SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs. Bmc Structural Biology. 8: 52. PMID 19055744 DOI: 10.1186/1472-6807-8-52  1
2008 Doolan DL, Mu Y, Unal B, Sundaresh S, Hirst S, Valdez C, Randall A, Molina D, Liang X, Freilich DA, Oloo JA, Blair PL, Aguiar JC, Baldi P, Davies DH, et al. Profiling humoral immune responses to P. falciparum infection with protein microarrays. Proteomics. 8: 4680-94. PMID 18937256 DOI: 10.1002/pmic.200800194  1
2008 Randall A, Cheng J, Sweredoski M, Baldi P. TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins. Bioinformatics (Oxford, England). 24: 513-20. PMID 18006547 DOI: 10.1093/bioinformatics/btm548  1
2007 Sundaresh S, Randall A, Unal B, Petersen JM, Belisle JT, Hartley MG, Duffield M, Titball RW, Davies DH, Felgner PL, Baldi P. From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis. Bioinformatics (Oxford, England). 23: i508-18. PMID 17646338 DOI: 10.1093/bioinformatics/btm207  1
2007 Eyles JE, Unal B, Hartley MG, Newstead SL, Flick-Smith H, Prior JL, Oyston PC, Randall A, Mu Y, Hirst S, Molina DM, Davies DH, Milne T, Griffin KF, Baldi P, et al. Immunodominant Francisella tularensis antigens identified using proteome microarray. Proteomics. 7: 2172-83. PMID 17533643 DOI: 10.1002/pmic.200600985  1
2006 Cheng J, Randall A, Baldi P. Prediction of protein stability changes for single-site mutations using support vector machines. Proteins. 62: 1125-32. PMID 16372356 DOI: 10.1002/prot.20810  1
2005 Cheng J, Randall AZ, Sweredoski MJ, Baldi P. SCRATCH: a protein structure and structural feature prediction server. Nucleic Acids Research. 33: W72-6. PMID 15980571 DOI: 10.1093/nar/gki396  1
2005 Davies DH, Liang X, Hernandez JE, Randall A, Hirst S, Mu Y, Romero KM, Nguyen TT, Kalantari-Dehaghi M, Crotty S, Baldi P, Villarreal LP, Felgner PL. Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. Proceedings of the National Academy of Sciences of the United States of America. 102: 547-52. PMID 15647345 DOI: 10.1073/pnas.0408782102  1
2004 Randall AZ, Baldi P, Villarreal LP. Structural proteomics of the poxvirus family. Artificial Intelligence in Medicine. 31: 105-15. PMID 15219289 DOI: 10.1016/j.artmed.2004.01.006  1
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