Eileen T. Dimalanta, Ph.D. - Publications

Affiliations: 
2004 University of Wisconsin, Madison, Madison, WI 
Area:
Molecular and computational genomics

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Vaisvila R, Ponnaluri VKC, Sun Z, Langhorst BW, Saleh L, Guan S, Dai N, Campbell MA, Sexton BS, Marks K, Samaranayake M, Samuelson JC, Church HE, Tamanaha E, Corrêa IR, ... ... Dimalanta ET, et al. Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA. Genome Research. PMID 34140313 DOI: 10.1101/gr.266551.120  0.301
2019 Hoppers A, Apone L, Panchapakesa V, McKay K, Liu P, Song C, Sumner C, Rozzi C, Arn M, Sanford J, Langhorst BW, Shtatland T, Stewart FJ, Munafo D, Dimalanta ET, et al. A Robust, Streamlined, Enzyme-based DNA Library Preparation Method Amenable to a Wide Range of DNA Inputs. Journal of Biomolecular Techniques : Jbt. 30: S2. PMID 31885517  0.31
2018 Kovar L, Nageswara-Rao M, Ortega-Rodriguez S, Dugas DV, Straub S, Cronn R, Strickler SR, Hughes CE, Hanley KA, Rodriguez DN, Langhorst BW, Dimalanta ET, Bailey CD. PacBio-based mitochondrial genome assembly of Leucaena trichandra (Leguminosae) and an intrageneric assessment of mitochondrial RNA editing. Genome Biology and Evolution. PMID 30137422 DOI: 10.1093/Gbe/Evy179  0.316
2016 Yigit E, Feehery GR, Langhorst BW, Stewart FJ, Dimalanta ET, Pradhan S, Slatko B, Gardner AF, McFarland J, Sumner C, Davis TB. A Microbiome DNA Enrichment Method for Next-Generation Sequencing Sample Preparation. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 115: 7.26.1-7.26.14. PMID 27366894 DOI: 10.1002/cpmb.12  0.318
2015 Druliner BR, Vera D, Johnson R, Ruan X, Apone LM, Dimalanta ET, Stewart FJ, Boardman L, Dennis JH. Comprehensive nucleosome mapping of the human genome in cancer progression. Oncotarget. PMID 26735342 DOI: 10.18632/Oncotarget.6811  0.327
2014 Yigit E, Hernandez DI, Trujillo JT, Dimalanta E, Bailey CD. Genome and metagenome sequencing: Using the human methyl-binding domain to partition genomic DNA derived from plant tissues. Applications in Plant Sciences. 2. PMID 25383266 DOI: 10.3732/apps.1400064  0.347
2013 Feehery GR, Yigit E, Oyola SO, Langhorst BW, Schmidt VT, Stewart FJ, Dimalanta ET, Amaral-Zettler LA, Davis T, Quail MA, Pradhan S. A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. Plos One. 8: e76096. PMID 24204593 DOI: 10.1371/journal.pone.0076096  0.321
2011 Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, ... ... Dimalanta E, et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature. 475: 348-52. PMID 21776081 DOI: 10.1038/Nature10242  0.384
2009 McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, Zhang Z, Ranade SS, Dimalanta ET, Hyland FC, Sokolsky TD, et al. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Research. 19: 1527-41. PMID 19546169 DOI: 10.1101/Gr.091868.109  0.39
2004 Zhou S, Kile A, Bechner M, Place M, Kvikstad E, Deng W, Wei J, Severin J, Runnheim R, Churas C, Forrest D, Dimalanta ET, Lamers C, Burland V, Blattner FR, et al. Single-molecule approach to bacterial genomic comparisons via optical mapping. Journal of Bacteriology. 186: 7773-82. PMID 15516592 DOI: 10.1128/Jb.186.22.7773-7782.2004  0.617
2004 Dimalanta ET, Lim A, Runnheim R, Lamers C, Churas C, Forrest DK, de Pablo JJ, Graham MD, Coppersmith SN, Goldstein S, Schwartz DC. A microfluidic system for large DNA molecule arrays. Analytical Chemistry. 76: 5293-301. PMID 15362885 DOI: 10.1021/Ac0496401  0.475
2003 Jendrejack RM, Dimalanta ET, Schwartz DC, Graham MD, de Pablo JJ. DNA dynamics in a microchannel. Physical Review Letters. 91: 038102. PMID 12906459 DOI: 10.1103/Physrevlett.91.038102  0.404
2002 Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin J, et al. A whole-genome shotgun optical map of Yersinia pestis strain KIM. Applied and Environmental Microbiology. 68: 6321-31. PMID 12450857 DOI: 10.1128/Aem.68.12.6321-6331.2002  0.608
2001 Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, Qi R, Skiadas J, Ramanathan A, Perna NT, Plunkett G, Burland V, Mau B, Hackett J, et al. Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Research. 11: 1584-93. PMID 11544203 DOI: 10.1101/Gr.172101  0.643
2001 Perna NT, Plunkett G, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Pósfai G, Hackett J, Klink S, Boutin A, Shao Y, ... ... Dimalanta ET, et al. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature. 409: 529-33. PMID 11206551 DOI: 10.1038/35054089  0.502
2001 Perna NT, Plunkett G, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Pósfai G, Hackett J, Klink S, Boutin A, Shao Y, ... ... Dimalanta ET, et al. erratum Genome sequence of enterohaemorrhagic Escherichia coli 0157:H7 Nature. 410: 240-240. DOI: 10.1038/35065664  0.569
1999 Lai Z, Jing J, Aston C, Clarke V, Apodaca J, Dimalanta ET, Carucci DJ, Gardner MJ, Mishra B, Anantharaman TS, Paxia S, Hoffman SL, Craig Venter J, Huff EJ, Schwartz DC. A shotgun optical map of the entire Plasmodium falciparum genome. Nature Genetics. 23: 309-13. PMID 10610179 DOI: 10.1038/15484  0.628
1998 Schwartz DC, Anantharaman T, Aston C, Mishra B, Clarke V, Gebauer D, Delobette S, Dimalanta E, Edington J, Evenzehav A, Giacalone J, Hiort C, Huff E, Jing J, Lail Z. New approaches to genomic analysis using single molecules Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 248-250.  0.494
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