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Roby P. Bhattacharyya, Ph.D. - Publications

Affiliations: 
2005 University of California, San Francisco, San Francisco, CA 
Area:
Cellular Signaling Systems
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ma P, Amemiya HM, He LL, Gandhi SJ, Nicol R, Bhattacharyya RP, Smillie CS, Hung DT. Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states. Cell. PMID 36708705 DOI: 10.1016/j.cell.2023.01.002  0.782
2022 Thakku SG, Ackerman CM, Myhrvold C, Bhattacharyya RP, Livny J, Ma P, Gomez GI, Sabeti PC, Blainey PC, Hung DT. Multiplexed detection of bacterial nucleic acids using Cas13 in droplet microarrays. Pnas Nexus. 1: pgac021. PMID 35450424 DOI: 10.1093/pnasnexus/pgac021  0.77
2022 Salamzade R, Manson AL, Walker BJ, Brennan-Krohn T, Worby CJ, Ma P, He LL, Shea TP, Qu J, Chapman SB, Howe W, Young SK, Wurster JI, Delaney ML, Kanjilal S, ... ... Bhattacharyya RP, et al. Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance. Genome Medicine. 14: 37. PMID 35379360 DOI: 10.1186/s13073-022-01040-y  0.712
2021 Lennon NJ, Bhattacharyya RP, Mina MJ, Rehm HL, Hung DT, Smole S, Woolley A, Lander ES, Gabriel SB. Cross-sectional assessment of SARS-CoV-2 viral load by symptom status in Massachusetts congregate living facilities. The Journal of Infectious Diseases. PMID 34255846 DOI: 10.1093/infdis/jiab367  0.462
2021 Reyes M, Filbin MR, Bhattacharyya RP, Sonny A, Mehta A, Billman K, Kays KR, Pinilla-Vera M, Benson ME, Cosimi LA, Hung DT, Levy BD, Villani AC, Sade-Feldman M, Baron RM, et al. Plasma from patients with bacterial sepsis or severe COVID-19 induces production of suppressive myeloid cells from human hematopoietic progenitor cells in vitro. Science Translational Medicine. PMID 34103408 DOI: 10.1126/scitranslmed.abe9599  0.526
2021 Ma P, He LL, Pironti A, Laibinis HH, Ernst CM, Manson AL, Bhattacharyya RP, Earl AM, Livny J, Hung D. Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics. Elife. 10. PMID 33871353 DOI: 10.7554/eLife.67310  0.757
2020 Reyes M, Filbin MR, Bhattacharyya RP, Sonny A, Mehta A, Billman K, Kays KR, Pinilla-Vera M, Benson ME, Cosimi LA, Hung DT, Levy BD, Villani AC, Sade-Feldman M, Baron RM, et al. Induction of a regulatory myeloid program in bacterial sepsis and severe COVID-19. Biorxiv : the Preprint Server For Biology. PMID 32908980 DOI: 10.1101/2020.09.02.280180  0.529
2020 Reyes M, Filbin MR, Bhattacharyya RP, Billman K, Eisenhaure T, Hung DT, Levy BD, Baron RM, Blainey PC, Goldberg MB, Hacohen N. An immune-cell signature of bacterial sepsis. Nature Medicine. PMID 32066974 DOI: 10.1038/S41591-020-0752-4  0.589
2019 Betin V, Penaranda C, Bandyopadhyay N, Yang R, Abitua A, Bhattacharyya RP, Fan A, Avraham R, Livny J, Shoresh N, Hung DT. Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis. Scientific Reports. 9: 19244. PMID 31848386 DOI: 10.1038/S41598-019-55633-6  0.743
2019 Bhattacharyya RP, Bandyopadhyay N, Ma P, Son SS, Liu J, He LL, Wu L, Khafizov R, Boykin R, Cerqueira GC, Pironti A, Rudy RF, Patel MM, Yang R, Skerry J, et al. Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination. Nature Medicine. PMID 31768064 DOI: 10.1038/S41591-019-0650-9  0.78
2019 Wadsworth CB, Sater MRA, Bhattacharyya RP, Grad YH. Impact of species diversity on the design of RNA-based diagnostics for antibiotic resistance in . Antimicrobial Agents and Chemotherapy. PMID 31138575 DOI: 10.1128/Aac.00549-19  0.41
2019 Bhattacharyya RP, Walker M, Boykin R, Son SS, Liu J, Hachey AC, Ma P, Wu L, Choi K, Cummins KC, Benson M, Skerry J, Ryu H, Wong SY, Goldberg MB, et al. Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA. Scientific Reports. 9: 4516. PMID 30872641 DOI: 10.1038/S41598-019-40792-3  0.777
2019 Reyes M, Bhattacharyya RP, Filbin M, Billman K, Eisenhaure T, Hung DT, Levy B, Baron R, Blainey P, Goldberg MB, Hacohen N. 1830. Single-cell Transcriptional Profiling Reveals an Immune Cell State Signature of Bacterial Sepsis Open Forum Infectious Diseases. 6: S42-S42. DOI: 10.1093/Ofid/Ofz359.092  0.592
2018 Bhattacharyya RP, Thakku SG, Hung DT. Harnessing CRISPR Effectors for Infectious Disease Diagnostics. Acs Infectious Diseases. PMID 30113801 DOI: 10.1021/Acsinfecdis.8B00170  0.595
2017 Gootenberg JS, Abudayyeh OO, Lee JW, Essletzbichler P, Dy AJ, Joung J, Verdine V, Donghia N, Daringer NM, Freije CA, Myhrvold C, Bhattacharyya RP, Livny J, Regev A, Koonin EV, et al. Nucleic acid detection with CRISPR-Cas13a/C2c2. Science (New York, N.Y.). PMID 28408723 DOI: 10.1126/Science.Aam9321  0.606
2017 Kim S, De Jonghe J, Kulesa AB, Feldman D, Vatanen T, Bhattacharyya RP, Berdy B, Gomez J, Nolan J, Epstein S, Blainey PC. High-throughput automated microfluidic sample preparation for accurate microbial genomics. Nature Communications. 8: 13919. PMID 28128213 DOI: 10.1038/Ncomms13919  0.306
2017 Bhattacharyya R, Liu J, Ma P, Bandyopadhyay N, Livny J, Hung D. Rapid Phenotypic Antibiotic Susceptibility Testing Through RNA Detection Open Forum Infectious Diseases. 4: S33-S33. DOI: 10.1093/Ofid/Ofx162.082  0.765
2015 Hou HW, Bhattacharyya RP, Hung DT, Han J. Direct detection and drug-resistance profiling of bacteremias using inertial microfluidics. Lab On a Chip. 15: 2297-307. PMID 25882432 DOI: 10.1039/C5Lc00311C  0.654
2015 Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, et al. Simultaneous generation of many RNA-seq libraries in a single reaction. Nature Methods. 12: 323-5. PMID 25730492 DOI: 10.1038/Nmeth.3313  0.574
2014 Wivagg CN, Bhattacharyya RP, Hung DT. Mechanisms of β-lactam killing and resistance in the context of Mycobacterium tuberculosis. The Journal of Antibiotics. 67: 645-54. PMID 25052484 DOI: 10.1038/Ja.2014.94  0.742
2006 Bhattacharyya RP, Reményi A, Yeh BJ, Lim WA. Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits. Annual Review of Biochemistry. 75: 655-80. PMID 16756506 DOI: 10.1146/Annurev.Biochem.75.103004.142710  0.758
2006 Bhattacharyya RP, Reményi A, Good MC, Bashor CJ, Falick AM, Lim WA. The Ste5 scaffold allosterically modulates signaling output of the yeast mating pathway. Science (New York, N.Y.). 311: 822-6. PMID 16424299 DOI: 10.1126/Science.1120941  0.739
2005 Reményi A, Good MC, Bhattacharyya RP, Lim WA. The role of docking interactions in mediating signaling input, output, and discrimination in the yeast MAPK network. Molecular Cell. 20: 951-62. PMID 16364919 DOI: 10.1016/J.Molcel.2005.10.030  0.706
2004 Dueber JE, Yeh BJ, Bhattacharyya RP, Lim WA. Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitry. Current Opinion in Structural Biology. 14: 690-9. PMID 15582393 DOI: 10.1016/J.Sbi.2004.10.004  0.728
2004 Zarrinpar A, Bhattacharyya RP, Nittler MP, Lim WA. Sho1 and Pbs2 act as coscaffolds linking components in the yeast high osmolarity MAP kinase pathway. Molecular Cell. 14: 825-32. PMID 15200959 DOI: 10.1016/J.Molcel.2004.06.011  0.672
2003 Zarrinpar A, Bhattacharyya RP, Lim WA. The structure and function of proline recognition domains. Science's Stke : Signal Transduction Knowledge Environment. 2003: RE8. PMID 12709533 DOI: 10.1126/Stke.2003.179.Re8  0.666
2003 Zarrinpar A, Bhattacharyya RP, Lim WA, Gough NR. Activation of Ras by Grb2-SOS: Demonstrating an Assembly Role of SH3 Domains Science Signaling. 2003: tr1-tr1. DOI: 10.1126/Stke.2003.191.Tr1  0.672
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