Year |
Citation |
Score |
2023 |
Rothman JA, Riis JL, Hamilton KR, Blair C, Granger DA, Whiteson KL. Oral microbial communities in children, caregivers, and associations with salivary biomeasures and environmental tobacco smoke exposure. Msystems. e0003623. PMID 37338237 DOI: 10.1128/msystems.00036-23 |
0.598 |
|
2023 |
Zünd M, Dunham SJB, Rothman JA, Whiteson KL. What Lies Beneath? Taking the Plunge into the Murky Waters of Phage Biology. Msystems. e0080722. PMID 36651762 DOI: 10.1128/msystems.00807-22 |
0.644 |
|
2022 |
Rothman JA, Saghir A, Chung SA, Boyajian N, Dinh T, Kim J, Oval J, Sharavanan V, York C, Zimmer-Faust AG, Langlois K, Steele JA, Griffith JF, Whiteson KL. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020-21 reveals widespread transcription of antibiotic resistance genes. Water Research. 229: 119421. PMID 36455460 DOI: 10.1016/j.watres.2022.119421 |
0.658 |
|
2022 |
Rothman JA, Whiteson KL. Sequencing and Variant Detection of Eight Abundant Plant-Infecting Tobamoviruses across Southern California Wastewater. Microbiology Spectrum. e0305022. PMID 36374107 DOI: 10.1128/spectrum.03050-22 |
0.61 |
|
2022 |
Rothman JA, Saghir A, Chung SA, Boyajian N, Dinh T, Kim J, Oval J, Sharavanan V, York C, Zimmer-Faust AG, Langlois K, Steele JA, Griffith JF, Whiteson KL. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020-21 reveals widespread transcription of antibiotic resistance genes. Biorxiv : the Preprint Server For Biology. PMID 35982656 DOI: 10.1101/2022.08.02.502560 |
0.66 |
|
2021 |
Rothman JA, Loveless TB, Kapcia J, Adams ED, Steele JA, Zimmer-Faust AG, Langlois K, Wanless D, Griffith M, Mao L, Chokry J, Griffith JF, Whiteson KL. RNA viromics of Southern California wastewater and detection of SARS-CoV-2 single nucleotide variants. Applied and Environmental Microbiology. AEM0144821. PMID 34550753 DOI: 10.1128/AEM.01448-21 |
0.632 |
|
2020 |
Gallagher T, Riedel S, Kapcia J, Caverly LJ, Carmody L, Kalikin LM, Lu J, Phan J, Gargus M, Kagawa M, Leemans SW, Rothman JA, Grun F, LiPuma JJ, Whiteson KL. LC-MS detection of antibiotic agents in sputum from persons with cystic fibrosis. Antimicrobial Agents and Chemotherapy. PMID 33139284 DOI: 10.1128/AAC.00927-20 |
0.605 |
|
2020 |
Rothman JA, Loveless TB, Griffith ML, Steele JA, Griffith JF, Whiteson KL. Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19. Microbiology Resource Announcements. 9. PMID 33033132 DOI: 10.1128/MRA.00907-20 |
0.63 |
|
2020 |
Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. Mbio. 11. PMID 32843557 DOI: 10.1128/Mbio.01851-20 |
0.368 |
|
2020 |
Hahn A, Whiteson K, Davis TJ, Phan J, Sami I, Koumbourlis AC, Freishtat RJ, Crandall KA, Bean HD. Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study. Frontiers in Cellular and Infection Microbiology. 10: 174. PMID 32411616 DOI: 10.3389/Fcimb.2020.00174 |
0.359 |
|
2019 |
Bru JL, Rawson B, Trinh C, Whiteson K, Høyland-Kroghsbo NM, Siryaporn A. PQS produced by the stress response repels swarms away from bacteriophage and antibiotics. Journal of Bacteriology. PMID 31451543 DOI: 10.1128/Jb.00383-19 |
0.301 |
|
2019 |
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, ... ... Whiteson KL, et al. Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nature Microbiology. PMID 31285584 DOI: 10.1038/S41564-019-0494-6 |
0.382 |
|
2019 |
Gallagher T, Phan J, Oliver A, Chase AB, England WE, Wandro S, Hendrickson C, Riedel SF, Whiteson K. Cystic fibrosis-associated strain-specific adaptations and responses to pH. Journal of Bacteriology. PMID 30642989 DOI: 10.1128/Jb.00478-18 |
0.315 |
|
2018 |
Wandro S, Oliver A, Gallagher T, Weihe C, England W, Martiny JBH, Whiteson K. Predictable Molecular Adaptation of Coevolving and Lytic Phage EfV12-phi1. Frontiers in Microbiology. 9: 3192. PMID 30766528 DOI: 10.3389/Fmicb.2018.03192 |
0.399 |
|
2018 |
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, ... ... Whiteson KL, et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. PMID 30556814 DOI: 10.1038/Nbt.4306 |
0.325 |
|
2018 |
Gallagher T, Phan J, Whiteson K. Getting our fingers on the pulse of slow growing bacteria in hard to reach places. Journal of Bacteriology. PMID 30249702 DOI: 10.1128/Jb.00540-18 |
0.312 |
|
2018 |
Nusbaum DJ, Sun F, Ren J, Zhu Z, Ramsy N, Pervolarakis N, Kunde S, England W, Gao B, Fiehn O, Michail S, Whiteson K. Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients. Fems Microbiology Ecology. PMID 30010747 DOI: 10.1093/Femsec/Fiy133 |
0.345 |
|
2018 |
Phan J, Gallagher T, Oliver A, England W, Whiteson K. Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. Fems Microbiology Letters. PMID 29617986 DOI: 10.1093/Femsle/Fny082 |
0.351 |
|
2018 |
Nguyen CQ, Thrift WJ, Bhattacharjee A, Ranjbar S, Gallagher T, Darvishzadeh-Varcheie M, Sanderson RN, Capolino F, Whiteson K, Baldi P, Hochbaum AI, Ragan R. Longitudinal Monitoring of Biofilm Formation via Robust SERS Quantification of Pseudomonas aeruginosa-Produced Metabolite. Acs Applied Materials & Interfaces. PMID 29589446 DOI: 10.1021/Acsami.7B18592 |
0.33 |
|
2017 |
Whiteson K, Agrawal S, Agrawal A. Differential Responses of Human Dendritic Cells to Metabolites from the Oral/Airway Microbiome. Clinical and Experimental Immunology. PMID 28194750 DOI: 10.1111/Cei.12943 |
0.331 |
|
2017 |
Phan J, Meinardi S, Barletta B, Blake D, Whiteson K. Stable isotope profiles reveal active production of VOCs from human-associated microbes. Journal of Breath Research. PMID 28070022 DOI: 10.1088/1752-7163/Aa5833 |
0.385 |
|
2016 |
Bos LDJ, Meinardi S, Blake D, Whiteson K. Bacteria in the airways of patients with cystic fibrosis are genetically capable of producing VOCs in breath. Journal of Breath Research. 10: 47103. PMID 27991430 DOI: 10.1088/1752-7163/10/4/047103 |
0.363 |
|
2016 |
Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P. Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease. Peerj. 4: e2174. PMID 27602256 DOI: 10.7717/Peerj.2174 |
0.341 |
|
2015 |
Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL. Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. The Isme Journal. PMID 26623545 DOI: 10.1038/Ismej.2015.207 |
0.36 |
|
2015 |
Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. The Isme Journal. 9: 1024-38. PMID 25514533 DOI: 10.1038/Ismej.2014.234 |
0.358 |
|
2014 |
Whiteson KL, Lazarevic V, Tangomo-Bento M, Girard M, Maughan H, Pittet D, Francois P, Schrenzel J. Noma affected children from niger have distinct oral microbial communities based on high-throughput sequencing of 16S rRNA gene fragments. Plos Neglected Tropical Diseases. 8: e3240. PMID 25474262 DOI: 10.1371/Journal.Pntd.0003240 |
0.351 |
|
2014 |
Whiteson KL, Bailey B, Bergkessel M, Conrad D, Delhaes L, Felts B, Harris JK, Hunter R, Lim YW, Maughan H, Quinn R, Salamon P, Sullivan J, Wagner BD, Rainey PB. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. American Journal of Respiratory and Critical Care Medicine. 189: 1309-15. PMID 24702670 DOI: 10.1164/Rccm.201312-2129Pp |
0.358 |
|
2014 |
Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL. Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. Mbio. 5: e00956-13. PMID 24643867 DOI: 10.1128/Mbio.00956-13 |
0.39 |
|
2014 |
Whiteson KL, Hernandez D, Lazarevic V, Gaia N, Farinelli L, François P, Pilo P, Frey J, Schrenzel J. A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis. Bmc Genomics. 15: 169. PMID 24581117 DOI: 10.1186/1471-2164-15-169 |
0.34 |
|
2014 |
Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F. Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. The Isme Journal. 8: 1247-58. PMID 24401860 DOI: 10.1038/Ismej.2013.229 |
0.344 |
|
2014 |
Whiteson K, Lim YW, Quinn R, Meinardi S, Blake D, Conrad D, Rohwer F. Linking genetic potential and active metabolism in cystic fibrosis microbial communities to find biomarkers of disease state F1000research. 5. DOI: 10.7490/F1000Research.1097088.1 |
0.309 |
|
2013 |
Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F. Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. Plos One. 8: e64285. PMID 23737977 DOI: 10.1371/Journal.Pone.0064285 |
0.315 |
|
2013 |
Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proceedings of the National Academy of Sciences of the United States of America. 110: 10771-6. PMID 23690590 DOI: 10.1073/Pnas.1305923110 |
0.351 |
|
2013 |
Lazarevic V, Manzano S, Gaïa N, Girard M, Whiteson K, Hibbs J, François P, Gervaix A, Schrenzel J. Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media Clinical Microbiology and Infection. 19: E335-E342. PMID 23565884 DOI: 10.1111/1469-0691.12213 |
0.354 |
|
2012 |
Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. Going viral: next-generation sequencing applied to phage populations in the human gut. Nature Reviews. Microbiology. 10: 607-17. PMID 22864264 DOI: 10.1038/Nrmicro2853 |
0.394 |
|
2011 |
Stenz L, Francois P, Whiteson K, Wolz C, Linder P, Schrenzel J. The CodY pleiotropic repressor controls virulence in gram-positive pathogens Fems Immunology and Medical Microbiology. 62: 123-139. PMID 21539625 DOI: 10.1111/J.1574-695X.2011.00812.X |
0.368 |
|
2010 |
Lazarevic V, Whiteson K, Hernandez D, François P, Schrenzel J. Study of inter- and intra-individual variations in the salivary microbiota Bmc Genomics. 11. PMID 20920195 DOI: 10.1186/1471-2164-11-523 |
0.405 |
|
2009 |
Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, Østerås M, Schrenzel J, François P. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing Journal of Microbiological Methods. 79: 266-271. PMID 19796657 DOI: 10.1016/J.Mimet.2009.09.012 |
0.416 |
|
2008 |
Whiteson KL, Rice PA. Binding and catalytic contributions to site recognition by flp recombinase. The Journal of Biological Chemistry. 283: 11414-23. PMID 18276592 DOI: 10.1074/Jbc.M800106200 |
0.516 |
|
2007 |
Whiteson KL, Chen Y, Chopra N, Raymond AC, Rice PA. Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305. Chemistry & Biology. 14: 121-9. PMID 17317566 DOI: 10.1016/J.Chembiol.2007.01.011 |
0.497 |
|
2006 |
Grindley ND, Whiteson KL, Rice PA. Mechanisms of site-specific recombination. Annual Review of Biochemistry. 75: 567-605. PMID 16756503 DOI: 10.1146/Annurev.Biochem.73.011303.073908 |
0.51 |
|
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