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Wei Wang - Publications

Affiliations: 
Computer Science University of California, Los Angeles, Los Angeles, CA 
Area:
Data Mining, Bioinformatics, Database Systems.
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Li SS, Liu ZM, Li J, Ma YB, Dong ZY, Hou JW, Shen FJ, Wang WB, Li QM, Su JG. Prediction of mutation-induced protein stability changes based on the geometric representations learned by a self-supervised method. Bmc Bioinformatics. 25: 282. PMID 39198740 DOI: 10.1186/s12859-024-05876-6  0.31
2024 Zhou Y, Cui H, Liu D, Wang W. MSTCRB: Predicting circRNA-RBP interaction by extracting multi-scale features based on transformer and attention mechanism. International Journal of Biological Macromolecules. 134805. PMID 39153682 DOI: 10.1016/j.ijbiomac.2024.134805  0.334
2024 Ko YS, Parkinson J, Liu C, Wang W. TUnA: an uncertainty-aware transformer model for sequence-based protein-protein interaction prediction. Briefings in Bioinformatics. 25. PMID 39051117 DOI: 10.1093/bib/bbae359  0.326
2022 Wang W, Su X, Liu D, Zhang H, Wang X, Zhou Y. Predicting DNA-binding protein and coronavirus protein flexibility using protein dihedral angle and sequence feature. Proteins. PMID 36321218 DOI: 10.1002/prot.26443  0.303
2021 Jiang JY, Ju CJ, Hao J, Chen M, Wang W. JEDI: circular RNA prediction based on junction encoders and deep interaction among splice sites. Bioinformatics (Oxford, England). 37: i289-i298. PMID 34252942 DOI: 10.1093/bioinformatics/btab288  0.63
2020 Zhou G, Chen M, Ju CJT, Wang Z, Jiang JY, Wang W. Mutation effect estimation on protein-protein interactions using deep contextualized representation learning. Nar Genomics and Bioinformatics. 2: lqaa015. PMID 32166223 DOI: 10.1093/nargab/lqaa015  0.644
2019 Xiong Y, Guo M, Ruan L, Kong X, Tang C, Zhu Y, Wang W. Heterogeneous network embedding enabling accurate disease association predictions. Bmc Medical Genomics. 12: 186. PMID 31865913 DOI: 10.1186/S12920-019-0623-3  0.305
2019 Chen M, Ju CJ, Zhou G, Chen X, Zhang T, Chang KW, Zaniolo C, Wang W. Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. Bioinformatics (Oxford, England). 35: i305-i314. PMID 31510705 DOI: 10.1093/Bioinformatics/Btz328  0.555
2019 LaPierre N, Ju CJ, Zhou G, Wang W. MetaPheno: A Critical Evaluation of Deep Learning and Machine Learning in Metagenome-Based Disease Prediction. Methods (San Diego, Calif.). PMID 30885720 DOI: 10.1016/J.Ymeth.2019.03.003  0.337
2019 Sigdel D, Kyi V, Zhang A, Setty SP, Liem DA, Shi Y, Wang X, Shen J, Wang W, Han J, Ping P. Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. Journal of Visualized Experiments : Jove. PMID 30855564 DOI: 10.3791/59108  0.312
2019 Mirza B, Wang W, Wang J, Choi H, Chung NC, Ping P. Machine Learning and Integrative Analysis of Biomedical Big Data. Genes. 10. PMID 30696086 DOI: 10.3390/Genes10020087  0.317
2018 Caufield JH, Liem DA, Garlid AO, Zhou Y, Watson K, Bui AAT, Wang W, Ping P. A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts. Journal of Visualized Experiments : Jove. PMID 30295669 DOI: 10.3791/58392  0.311
2018 Liem DA, Murali S, Sigdel D, Shi Y, Wang X, Shen J, Choi H, Caufield JH, Wang W, Ping P, Han J. Phrase Mining of Textual Data to Analyze Extracellular Matrix Protein Patterns Across Cardiovascular Disease. American Journal of Physiology. Heart and Circulatory Physiology. PMID 29775406 DOI: 10.1152/Ajpheart.00175.2018  0.311
2018 Ping P, Hermjakob H, Polson JS, Benos PV, Wang W. Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. Circulation Research. 122: 1290-1301. PMID 29700073 DOI: 10.1161/Circresaha.117.310967  0.311
2018 Wang W, Sun W, Wang W, Szatkiewicz J. A randomized approach to speed up the analysis of large-scale read-count data in the application of CNV detection. Bmc Bioinformatics. 19: 74. PMID 29490610 DOI: 10.1186/S12859-018-2077-6  0.301
2016 Ju C, Zhao Z, Wang W. Efficient approach to correct read alignment for pseudogene abundance estimates. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27429446 DOI: 10.1109/Tcbb.2016.2591533  0.335
2015 Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, ... ... Wang W, et al. Corrigendum: Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics. 47: 690. PMID 26018903 DOI: 10.1038/Ng0615-690A  0.305
2015 Wang W, Wang W, Sun W, Crowley JJ, Szatkiewicz JP. Allele-specific copy-number discovery from whole-genome and whole-exome sequencing. Nucleic Acids Research. PMID 25883151 DOI: 10.1093/Nar/Gkv319  0.34
2014 Goldfarb D, Hast BE, Wang W, Major MB. Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data. Journal of Proteome Research. 13: 5944-55. PMID 25300367 DOI: 10.1021/Pr5008416  0.373
2014 Huang S, Holt J, Kao CY, McMillan L, Wang W. A novel multi-alignment pipeline for high-throughput sequencing data. Database : the Journal of Biological Databases and Curation. 2014. PMID 24948510 DOI: 10.1093/Database/Bau057  0.326
2014 Cheng W, Jin X, Sun JT, Lin X, Zhang X, Wang W. Searching dimension incomplete databases Ieee Transactions On Knowledge and Data Engineering. 26: 725-738. DOI: 10.1109/Tkde.2013.14  0.303
2014 Wang W, Hu B, Wang Z. Globality and locality incorporation in distance metric learning Neurocomputing. 129: 185-198. DOI: 10.1016/J.Neucom.2013.09.041  0.319
2013 Zhang Z, Huang S, Wang J, Zhang X, Pardo Manuel de Villena F, McMillan L, Wang W. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment. Bioinformatics (Oxford, England). 29: i291-9. PMID 23812996 DOI: 10.1093/Bioinformatics/Btt216  0.321
2012 Zhang X, Huang S, Sun W, Wang W. Rapid and robust resampling-based multiple-testing correction with application in a genome-wide expression quantitative trait loci study. Genetics. 190: 1511-20. PMID 22298711 DOI: 10.1534/Genetics.111.137737  0.302
2010 Zhang X, Huang S, Zou F, Wang W. TEAM: efficient two-locus epistasis tests in human genome-wide association study. Bioinformatics (Oxford, England). 26: i217-27. PMID 20529910 DOI: 10.1093/Bioinformatics/Btq186  0.315
2010 Wu A, Tan Z, Wang W. Annotation based query answer over inconsistent database Journal of Computer Science and Technology. 25: 469-481. DOI: 10.1007/S11390-010-9338-9  0.322
2009 Bandyopadhyay D, Huan J, Prins J, Snoeyink J, Wang W, Tropsha A. Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. Journal of Computer-Aided Molecular Design. 23: 785-97. PMID 19548090 DOI: 10.1007/S10822-009-9277-0  0.318
2009 Bandyopadhyay D, Huan J, Prins J, Snoeyink J, Wang W, Tropsha A. Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. Journal of Computer-Aided Molecular Design. 23: 773-84. PMID 19543979 DOI: 10.1007/S10822-009-9273-4  0.336
2006 Xu J, Wang W, Pei J, Wang X, Shi B, Fu AW. Utility-based anonymization for privacy preservation with less information loss Sigkdd Explorations. 8: 21-30. DOI: 10.1145/1233321.1233324  0.312
2006 Huan J, Prins JF, Wang W. Local Structure Comparison of Proteins Advances in Computers. 68: 177-251. DOI: 10.1016/S0065-2458(06)68005-4  0.329
2006 Kum HC, Chang JH, Wang W. Sequential pattern mining in multi-databases via multiple alignment Data Mining and Knowledge Discovery. 12: 151-180. DOI: 10.1007/S10618-005-0017-3  0.304
2005 Huan J, Bandyopadhyay D, Wang W, Snoeyink J, Prins J, Tropsha A. Comparing graph representations of protein structure for mining family-specific residue-based packing motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 657-71. PMID 16108709 DOI: 10.1089/Cmb.2005.12.657  0.301
2005 Parthasarathy S, Wang W, Zaki M. BIOKDD 2005 workshop report Acm Sigkdd Explorations Newsletter. 7: 129-131. DOI: 10.1145/1117454.1117472  0.33
2005 Yang J, Wang H, Wang W, Yu PS. An improved biclustering method for analyzing gene expression profiles International Journal On Artificial Intelligence Tools. 14: 771-789. DOI: 10.1142/S0218213005002387  0.301
2005 Wang W, Yang J. Guest Editors' Introduction: Special Issue on Mining Biological Data Ieee Transactions On Knowledge and Data Engineering. 17: 1019-1020. DOI: 10.1109/Tkde.2005.128  0.4
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