| Year |
Citation |
Score |
| 2024 |
Dey P, Ray SD, Kochiganti VHS, Pukazhenthi BS, Koepfli KP, Singh RP. Mitogenomic Insights into the Evolution, Divergence Time, and Ancestral Ranges of Quails. Genes. 15. PMID 38927678 DOI: 10.3390/genes15060742 |
0.419 |
|
| 2024 |
Koepfli KP. Evolution: Genomes reveal the reticulated history of giraffes. Current Biology : Cb. 34: R533-R536. PMID 38834025 DOI: 10.1016/j.cub.2024.04.045 |
0.363 |
|
| 2024 |
Buthasane W, Shotelersuk V, Chetruengchai W, Srichomthong C, Assawapitaksakul A, Tangphatsornruang S, Pootakham W, Sonthirod C, Tongsima S, Wangkumhang P, Wilantho A, Thongphakdee A, Sanannu S, Poksawat C, Nipanunt T, ... ... Koepfli KP, et al. Comprehensive genome assembly reveals genetic diversity and carcass consumption insights in critically endangered Asian king vultures. Scientific Reports. 14: 9455. PMID 38658744 DOI: 10.1038/s41598-024-59990-9 |
0.393 |
|
| 2024 |
Sosale MS, Roelke-Parker M, Machange GA, Edwards CW, Figueiró HV, Koepfli KP. The complete mitochondrial genome of Meller's mongoose (). Mitochondrial Dna. Part B, Resources. 9: 432-436. PMID 38586507 DOI: 10.1080/23802359.2024.2333567 |
0.424 |
|
| 2024 |
Pasciullo Boychuck S, Brenner LJ, Gagorik CN, Schamel JT, Baker S, Tran E, vonHoldt BM, Koepfli KP, Maldonado JE, DeCandia AL. The gut microbiomes of Channel Island foxes and island spotted skunks exhibit fine-scale differentiation across host species and island populations. Ecology and Evolution. 14: e11017. PMID 38362164 DOI: 10.1002/ece3.11017 |
0.654 |
|
| 2024 |
Tennenbaum SR, Bortner R, Lynch C, Santymire R, Crosier A, Santiestevan J, Marinari P, Pukazhenthi BS, Comizzoli P, Hawkins MTR, Maldonado JE, Koepfli KP, vonHoldt BM, DeCandia AL. Epigenetic changes to gene pathways linked to male fertility in ex situ black-footed ferrets. Evolutionary Applications. 17: e13634. PMID 38283602 DOI: 10.1111/eva.13634 |
0.615 |
|
| 2023 |
Pumpitakkul V, Chetruengchai W, Srichomthong C, Phokaew C, Pootakham W, Sonthirod C, Nawae W, Tongsima S, Wangkumhang P, Wilantho A, Utara Y, Thongpakdee A, Sanannu S, Maikaew U, Khuntawee S, ... ... Koepfli KP, et al. Comparative genomics and genome-wide SNPs of endangered Eld's deer provide breeder selection for inbreeding avoidance. Scientific Reports. 13: 19806. PMID 37957263 DOI: 10.1038/s41598-023-47014-x |
0.345 |
|
| 2023 |
du Plessis SJ, Blaxter M, Koepfli KP, Chadwick EA, Hailer F. Genomics reveals complex population history and unexpected diversity of Eurasian otters (Lutra lutra) in Britain relative to genetic methods. Molecular Biology and Evolution. PMID 37713621 DOI: 10.1093/molbev/msad207 |
0.404 |
|
| 2023 |
Sosale MS, Songsasen N, İbiş O, Edwards CW, Figueiró HV, Koepfli KP. Corrigendum to "The complete mitochondrial genome and phylogenetic characterization of two putative subspecies of golden jackal (Canis aureus cruesemanni and Canis aureus moreotica)" [Gene 866 (2023) 147303]. Gene. 877: 147536. PMID 37352622 DOI: 10.1016/j.gene.2023.147536 |
0.322 |
|
| 2023 |
Kliver S, Houck ML, Perelman PL, Totikov A, Tomarovsky A, Dudchenko O, Omer AD, Colaric Z, Weisz D, Aiden EL, Chan S, Hastie A, Komissarov A, Ryder OA, Graphodatsky A, ... ... Koepfli KP, et al. Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes). The Journal of Heredity. PMID 37249392 DOI: 10.1093/jhered/esad035 |
0.355 |
|
| 2023 |
Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, ... ... Koepfli KP, ... ... Koepfli KP, et al. Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.). 380: eabn3943. PMID 37104599 DOI: 10.1126/science.abn3943 |
0.411 |
|
| 2023 |
Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK, ... ... Koepfli KP, et al. The contribution of historical processes to contemporary extinction risk in placental mammals. Science (New York, N.Y.). 380: eabn5856. PMID 37104572 DOI: 10.1126/science.abn5856 |
0.412 |
|
| 2023 |
Houck ML, Koepfli KP, Hains T, Khan R, Charter SJ, Fronczek JA, Misuraca AC, Kliver S, Perelman PL, Beklemisheva V, Graphodatsky A, Luo SJ, O'Brien SJ, Lim NT, Chin JSC, et al. Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 31: 13. PMID 37043058 DOI: 10.1007/s10577-023-09722-y |
0.492 |
|
| 2023 |
Yakupova A, Tomarovsky A, Totikov A, Beklemisheva V, Logacheva M, Perelman PL, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Serdyukova NA, Rayko M, Bulyonkova T, Cherkasov N, Pylev V, ... ... Koepfli KP, et al. Chromosome-Length Assembly of the Baikal Seal () Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal. Genes. 14. PMID 36980891 DOI: 10.3390/genes14030619 |
0.419 |
|
| 2023 |
Sosale MS, Songsasen N, İbiş O, Edwards CW, Figueiró HV, Koepfli KP. The complete mitochondrial genome and phylogenetic characterization of two putative subspecies of golden jackal (Canis aureus cruesemanni and Canis aureus moreotica). Gene. 866: 147303. PMID 36854348 DOI: 10.1016/j.gene.2023.147303 |
0.433 |
|
| 2023 |
vonHoldt BM, Schweizer RM, Stahler D, Robinson JA, Pires D, Koepfli KP. In Memoriam: Robert K. Wayne, a pioneer of evolutionary genomics for wildlife with an emphasis on endangered species. The Journal of Heredity. PMID 36702782 DOI: 10.1093/jhered/esad005 |
0.708 |
|
| 2022 |
Bursell MG, Dikow RB, Figueiró HV, Dudchenko O, Flanagan JP, Aiden EL, Goossens B, Nathan SKSS, Johnson WE, Koepfli KP, Frandsen PB. Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories. Iscience. 25: 105647. PMID 36590460 DOI: 10.1016/j.isci.2022.105647 |
0.492 |
|
| 2022 |
Gray A, Brito JC, Edwards CW, Figueiró HV, Koepfli KP. First complete mitochondrial genome of the Saharan striped polecat (). Mitochondrial Dna. Part B, Resources. 7: 1957-1960. PMID 36386018 DOI: 10.1080/23802359.2022.2141080 |
0.382 |
|
| 2022 |
Hempel E, Bibi F, Faith JT, Koepfli KP, Klittich AM, Duchêne DA, Brink JS, Kalthoff DC, Dalén L, Hofreiter M, Westbury MV. Blue turns to grey - Palaeogenomic insights into the evolutionary history and extinction of the blue antelope (Hippotragus leucophaeus). Molecular Biology and Evolution. PMID 36322483 DOI: 10.1093/molbev/msac241 |
0.477 |
|
| 2022 |
Chavez DE, Gronau I, Hains T, Dikow RB, Frandsen PB, Figueiró HV, Garcez FS, Tchaicka L, de Paula RC, Rodrigues FHG, Jorge RSP, Lima ES, Songsasen N, Johnson WE, Eizirik E, ... Koepfli KP, et al. Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids. Proceedings of the National Academy of Sciences of the United States of America. 119: e2205986119. PMID 35969758 DOI: 10.1073/pnas.2205986119 |
0.662 |
|
| 2022 |
de Ferran V, Figueiró HV, de Jesus Trindade F, Smith O, Sinding MS, Trinca CS, Lazzari GZ, Veron G, Vianna JA, Barbanera F, Kliver S, Serdyukova N, Bulyonkova T, Ryder OA, Gilbert MTP, ... Koepfli KP, et al. Phylogenomics of the world's otters. Current Biology : Cb. PMID 35779528 DOI: 10.1016/j.cub.2022.06.036 |
0.511 |
|
| 2022 |
Alvarez-Estape M, Fontsere C, Serres-Armero A, Kuderna LFK, Dobrynin P, Guidara H, Pukazhenthi BS, Koepfli KP, Marques-Bonet T, Moreno E, Lizano E. Insights from the rescue and breeding management of Cuvier's gazelle () through whole-genome sequencing. Evolutionary Applications. 15: 351-364. PMID 35386395 DOI: 10.1111/eva.13336 |
0.451 |
|
| 2022 |
Derežanin L, Blažytė A, Dobrynin P, Duchêne DA, Grau JH, Jeon S, Kliver S, Koepfli KP, Meneghini D, Preick M, Tomarovsky A, Totikov A, Fickel J, Förster DW. Multiple types of genomic variation contribute to adaptive traits in the mustelid subfamily Guloninae. Molecular Ecology. PMID 35334142 DOI: 10.1111/mec.16443 |
0.427 |
|
| 2022 |
Choo SW, Chong JL, Gaubert P, Hughes AC, O'Brien S, Chaber AL, Antunes A, Platto S, Sun NC, Yu L, Koepfli KP, Suwal TL, Thakur M, Ntie S, Panjang E, et al. A collective statement in support of saving pangolins. The Science of the Total Environment. 153666. PMID 35176378 DOI: 10.1016/j.scitotenv.2022.153666 |
0.309 |
|
| 2022 |
Wang MS, Thakur M, Jhala Y, Wang S, Srinivas Y, Dai SS, Liu ZX, Chen HM, Green RE, Koepfli KP, Shapiro B. Genome Sequencing of a Gray Wolf from Peninsular India Provides New Insights into the Evolution and Hybridization of Gray Wolves. Genome Biology and Evolution. 14. PMID 35137061 DOI: 10.1093/gbe/evac012 |
0.468 |
|
| 2022 |
Stephan T, Burgess SM, Cheng H, Danko CG, Gill CA, Jarvis ED, Koepfli KP, Koltes JE, Lyons E, Ronald P, Ryder OA, Schriml LM, Soltis P, VandeWoude S, Zhou H, et al. Darwinian genomics and diversity in the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042807 DOI: 10.1073/pnas.2115644119 |
0.444 |
|
| 2021 |
Beichman AC, Kalhori P, Kyriazis CC, DeVries AA, Nigenda-Morales S, Heckel G, Schramm Y, Moreno-Estrada A, Kennett DJ, Hylkema M, Bodkin J, Koepfli KP, Lohmueller KE, Wayne RK. Genomic analyses reveal range-wide devastation of sea otter populations. Molecular Ecology. PMID 34967471 DOI: 10.1111/mec.16334 |
0.59 |
|
| 2021 |
Totikov A, Tomarovsky A, Prokopov D, Yakupova A, Bulyonkova T, Derezanin L, Rasskazov D, Wolfsberger WW, Koepfli KP, Oleksyk TK, Kliver S. Chromosome-Level Genome Assemblies Expand Capabilities of Genomics for Conservation Biology. Genes. 12. PMID 34573318 DOI: 10.3390/genes12091336 |
0.354 |
|
| 2021 |
Hempel E, Westbury MV, Grau JH, Trinks A, Paijmans JLA, Kliver S, Barlow A, Mayer F, Müller J, Chen L, Koepfli KP, Hofreiter M, Bibi F. Diversity and Paleodemography of the Addax (), a Saharan Antelope on the Verge of Extinction. Genes. 12. PMID 34440410 DOI: 10.3390/genes12081236 |
0.451 |
|
| 2021 |
Wold J, Koepfli KP, Galla SJ, Eccles D, Hogg CJ, Le Lec MF, Guhlin J, Santure AW, Steeves TE. Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular Ecology. PMID 34424587 DOI: 10.1111/mec.16141 |
0.433 |
|
| 2021 |
Tamazian G, Dobrynin P, Zhuk A, Zhernakova DV, Perelman PL, Serdyukova NA, Graphodatsky AS, Komissarov A, Kliver S, Cherkasov N, Scott AF, Mohr DW, Koepfli KP, O'Brien SJ, Krasheninnikova K. Draft de novo genome assembly of the elusive jaguarundi, Puma yagouaroundi. The Journal of Heredity. PMID 34146095 DOI: 10.1093/jhered/esab036 |
0.532 |
|
| 2021 |
Coimbra RTF, Winter S, Kumar V, Koepfli KP, Gooley RM, Dobrynin P, Fennessy J, Janke A. Whole-genome analysis of giraffe supports four distinct species. Current Biology : Cb. PMID 33957077 DOI: 10.1016/j.cub.2021.04.033 |
0.519 |
|
| 2021 |
Kolchanova S, Komissarov A, Kliver S, Mazo-Vargas A, Afanador Y, Velez-Valentín J, de la Rosa RV, Castro-Marquez S, Rivera-Colon I, Majeske AJ, Wolfsberger WW, Hains T, Corvelo A, Martinez-Cruzado JC, Glenn TC, ... ... Koepfli KP, et al. Molecular Phylogeny and Evolution of Amazon Parrots in the Greater Antilles. Genes. 12. PMID 33924228 DOI: 10.3390/genes12040608 |
0.502 |
|
| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Koepfli KP, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.555 |
|
| 2021 |
Gonçalves M, Siegismund HR, Jansen van Vuuren B, Koepfli KP, Ferrand N, Godinho R. De novo whole-genome assembly and resequencing resources for the roan (Hippotragus equinus), an iconic African antelope. G3 (Bethesda, Md.). 11. PMID 33604669 DOI: 10.1093/g3journal/jkab002 |
0.41 |
|
| 2020 |
Tsuchiya MTN, Dikow RB, Koepfli KP, Frandsen PB, Rockwood LL, Maldonado JE. Whole Genome Sequencing of Procyonids Reveals Distinct Demographic Histories in Kinkajou (Potos Flavus) and Northern Raccoon (Procyon Lotor). Genome Biology and Evolution. PMID 33331895 DOI: 10.1093/gbe/evaa255 |
0.432 |
|
| 2020 |
Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, ... ... Koepfli KP, et al. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology : Cb. PMID 33065008 DOI: 10.1016/j.cub.2020.09.051 |
0.606 |
|
| 2020 |
Gooley RM, Tamazian G, Castañeda-Rico S, Murphy KR, Dobrynin P, Ferrie GM, Haefele H, Maldonado JE, Wildt DE, Pukazhenthi BS, Edwards CW, Koepfli KP. Comparison of genomic diversity and structure of sable antelope () in zoos, conservation centers, and private ranches in North America. Evolutionary Applications. 13: 2143-2154. PMID 32908610 DOI: 10.1111/Eva.12976 |
0.43 |
|
| 2020 |
de Manuel M, Barnett R, Sandoval-Velasco M, Yamaguchi N, Garrett Vieira F, Zepeda Mendoza ML, Liu S, Martin MD, Sinding MS, Mak SST, Carøe C, Liu S, Guo C, Zheng J, Zazula G, ... ... Koepfli KP, et al. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32366643 DOI: 10.1073/Pnas.1919423117 |
0.555 |
|
| 2020 |
Humble E, Dobrynin P, Senn H, Chuven J, Scott AF, Mohr DW, Dudchenko O, Omer AD, Colaric Z, Aiden EL, Salem Al Dhaheri S, Wildt D, Oliaji S, Tamazian G, Pukazhenthi B, ... ... Koepfli KP, et al. Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild. Molecular Ecology Resources. PMID 32365406 DOI: 10.1111/1755-0998.13181 |
0.418 |
|
| 2020 |
Yang C, Li F, Xiong Z, Koepfli KP, Ryder O, Perelman P, Li Q, Zhang G. A draft genome assembly of spotted hyena, Crocuta crocuta. Scientific Data. 7: 126. PMID 32345970 DOI: 10.1038/S41597-020-0468-9 |
0.32 |
|
| 2020 |
Noskova E, Ulyantsev V, Koepfli KP, O'Brien SJ, Dobrynin P. GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data. Gigascience. 9. PMID 32112099 DOI: 10.1093/gigascience/giaa005 |
0.383 |
|
| 2019 |
Mitra S, Kunteepuram V, Koepfli KP, Mehra N, Tabasum W, Sreenivas A, Gaur A. Characteristics of the complete mitochondrial genome of the monotypic genus (Family: Viverridae) and its phylogenetic implications. Peerj. 7: e8033. PMID 31788354 DOI: 10.7717/Peerj.8033 |
0.445 |
|
| 2019 |
Wildt D, Miller P, Koepfli KP, Pukazhenthi B, Palfrey K, Livingston G, Beetem D, Shurter S, Gregory J, Takács M, Snodgrass K. Breeding Centers, Private Ranches, and Genomics for Creating Sustainable Wildlife Populations. Bioscience. 69: 928-943. PMID 31719713 DOI: 10.1093/Biosci/Biz091 |
0.508 |
|
| 2019 |
Beichman AC, Koepfli KP, Li G, Murphy W, Dobrynin P, Kilver S, Tinker MT, Murray MJ, Johnson J, Lindblad-Toh K, Karlsson EK, Lohmueller KE, Wayne RK. Aquatic adaptation and depleted diversity: a deep dive into the genomes of the sea otter and giant otter. Molecular Biology and Evolution. PMID 31212313 DOI: 10.1093/Molbev/Msz101 |
0.605 |
|
| 2019 |
Chavez DE, Gronau I, Hains T, Kliver S, Koepfli KP, Wayne RK. Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus). Scientific Reports. 9: 8329. PMID 31171819 DOI: 10.1038/S41598-019-44772-5 |
0.647 |
|
| 2019 |
Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Vaz Pinto P, et al. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (): A Resource for Monitoring Diversity in and Populations. G3 (Bethesda, Md.). PMID 31000506 DOI: 10.1534/G3.119.400084 |
0.604 |
|
| 2019 |
Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, et al. Genome-wide sequence analyses of ethnic populations across Russia. Genomics. PMID 30902755 DOI: 10.1016/J.Ygeno.2019.03.007 |
0.523 |
|
| 2019 |
He K, Gutiérrez EE, Heming NM, Koepfli K, Wan T, He S, Jin W, Liu S, Jiang X. Cryptic phylogeographic history sheds light on the generation of species diversity in sky-island mountains Journal of Biogeography. 46: 2232-2247. DOI: 10.1111/Jbi.13664 |
0.417 |
|
| 2018 |
Heppenheimer E, Harrigan RJ, Rutledge LY, Koepfli KP, DeCandia AL, Brzeski KE, Benson JF, Wheeldon T, Patterson BR, Kays R, Hohenlohe PA, von Holdt BM. Population Genomic Analysis of North American Eastern Wolves (Canis lycaon) Supports Their Conservation Priority Status. Genes. 9. PMID 30518163 DOI: 10.3390/Genes9120606 |
0.49 |
|
| 2018 |
Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, ... ... Koepfli KP, et al. Interspecific Gene Flow Shaped the Evolution of the Genus Canis. Current Biology : Cb. PMID 30344120 DOI: 10.1016/J.Cub.2018.08.041 |
0.545 |
|
| 2018 |
Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, et al. Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. PMID 30104754 DOI: 10.1038/S41559-018-0664-6 |
0.425 |
|
| 2018 |
Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, et al. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. PMID 30082739 DOI: 10.1038/S41559-018-0611-6 |
0.514 |
|
| 2018 |
Grau JH, Hackl T, Koepfli KP, Hofreiter M. Improving draft genome contiguity with reference-derived in silico mate-pair libraries. Gigascience. PMID 29688527 DOI: 10.1093/Gigascience/Giy029 |
0.442 |
|
| 2018 |
Harper C, Ludwig A, Clarke A, Makgopela K, Yurchenko A, Guthrie A, Dobrynin P, Tamazian G, Emslie R, van Heerden M, Hofmeyr M, Potter R, Roets J, Beytell P, Otiende M, ... ... Koepfli KP, et al. Robust forensic matching of confiscated horns to individual poached African rhinoceros. Current Biology : Cb. 28: R13-R14. PMID 29316411 DOI: 10.1016/J.Cub.2017.11.005 |
0.533 |
|
| 2018 |
İbiş O, Koepfli K, Özcan S, Tez C. Genetic analysis of Turkish martens: Do two species of the genus Martes occur in Anatolia? Zoologica Scripta. 47: 390-403. DOI: 10.1111/Zsc.12289 |
0.458 |
|
| 2016 |
Mohamed Yusoff A, Tan TK, Hari R, Koepfli KP, Wee WY, Antunes A, Sitam FT, Rovie-Ryan JJ, Karuppannan KV, Wong GJ, Lipovich L, Warren WC, O'Brien SJ, Choo SW. De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin. Scientific Reports. 6: 28199. PMID 27618997 DOI: 10.1038/Srep28199 |
0.458 |
|
| 2016 |
Tamazian G, Dobrynin P, Krasheninnikova K, Komissarov A, Koepfli KP, O'Brien SJ. Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences. Gigascience. 5: 38. PMID 27549770 DOI: 10.1186/S13742-016-0141-6 |
0.514 |
|
| 2016 |
Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko A, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, et al. Pangolin genomes and the evolution of mammalian scales and immunity. Genome Research. PMID 27510566 DOI: 10.1101/Gr.203521.115 |
0.437 |
|
| 2016 |
O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P. Response to Comment by Faurby, Werdelin and Svenning. Genome Biology. 17: 90. PMID 27150130 DOI: 10.1186/S13059-016-0942-Z |
0.539 |
|
| 2015 |
Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel M, Godinez R, Komissarov A, et al. Genomic legacy of the African cheetah, Acinonyx jubatus. Genome Biology. 16: 277. PMID 26653294 DOI: 10.1186/S13059-015-0837-4 |
0.644 |
|
| 2015 |
Spencer PB, Yurchenko AA, David VA, Scott R, Koepfli KP, Driscoll C, O'Brien SJ, Menotti-Raymond M. The Population Origins and Expansion of Feral Cats in Australia. The Journal of Heredity. PMID 26647063 DOI: 10.1093/Jhered/Esv095 |
0.545 |
|
| 2015 |
Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, et al. Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species. Current Biology : Cb. 25: 2158-65. PMID 26234211 DOI: 10.1016/J.Cub.2015.06.060 |
0.787 |
|
| 2015 |
Koepfli KP, Paten B, O'Brien SJ. The Genome 10K Project: a way forward. Annual Review of Animal Biosciences. 3: 57-111. PMID 25689317 DOI: 10.1146/Annurev-Animal-090414-014900 |
0.55 |
|
| 2014 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... ... Koepfli KP, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451 |
0.641 |
|
| 2014 |
Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, et al. Annotated features of domestic cat - Felis catus genome. Gigascience. 3: 13. PMID 25143822 DOI: 10.1186/2047-217X-3-13 |
0.567 |
|
| 2014 |
Johnson WE, Koepfli K. The role of genomics in conservation and reproductive sciences. Advances in Experimental Medicine and Biology. 753: 71-96. PMID 25091907 DOI: 10.1007/978-1-4939-0820-2_5 |
0.505 |
|
| 2013 |
O'Brien SJ, Koepfli KP. Evolution: a new cat species emerges. Current Biology : Cb. 23: R1103-5. PMID 24355788 DOI: 10.1016/J.Cub.2013.10.074 |
0.567 |
|
| 2013 |
Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann HP, Loponte DM, Acosta AA, Giemsch L, ... ... Koepfli KP, et al. Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science (New York, N.Y.). 342: 871-4. PMID 24233726 DOI: 10.1126/Science.1243650 |
0.688 |
|
| 2013 |
Cho YS, Hu L, Hou H, Lee H, Xu J, Kwon S, Oh S, Kim HM, Jho S, Kim S, Shin YA, Kim BC, Kim H, Kim CU, Luo SJ, ... ... Koepfli KP, et al. The tiger genome and comparative analysis with lion and snow leopard genomes. Nature Communications. 4: 2433. PMID 24045858 DOI: 10.1038/Ncomms3433 |
0.622 |
|
| 2013 |
Bornholdt R, Helgen K, Koepfli KP, Oliveira L, Lucherini M, Eizirik E. Taxonomic revision of the genus Galictis (Carnivora: Mustelidae): Species delimitation, morphological diagnosis, and refined mapping of geographical distribution Zoological Journal of the Linnean Society. 167: 449-472. DOI: 10.1111/J.1096-3642.2012.00859.X |
0.519 |
|
| 2012 |
Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, Haussler D, Koepfli KP, Houck ML, Perelman P, Mastromonaco G, Bentley AC, Venkatesh B, Zhang YP, Murphy RW. Tissue sampling methods and standards for vertebrate genomics. Gigascience. 1: 8. PMID 23587255 DOI: 10.1186/2047-217X-1-8 |
0.53 |
|
| 2012 |
Trinca CS, de Thoisy B, Rosas FC, Waldemarin HF, Koepfli KP, Vianna JA, Eizirik E. Phylogeography and demographic history of the neotropical otter (Lontra longicaudis). The Journal of Heredity. 103: 479-92. PMID 22589556 DOI: 10.1093/Jhered/Ess001 |
0.516 |
|
| 2011 |
Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MT, Nielsen R, Ho SY, Goebel T, Graf KE, Byers D, Stenderup JT, ... ... Koepfli KP, et al. Species-specific responses of Late Quaternary megafauna to climate and humans. Nature. 479: 359-64. PMID 22048313 DOI: 10.1038/Nature10574 |
0.681 |
|
| 2011 |
Shrestha B, Reed JM, Starks PT, Kaufman GE, Goldstone JV, Roelke ME, O'Brien SJ, Koepfli KP, Frank LG, Court MH. Evolution of a major drug metabolizing enzyme defect in the domestic cat and other felidae: phylogenetic timing and the role of hypercarnivory. Plos One. 6: e18046. PMID 21464924 DOI: 10.1371/Journal.Pone.0018046 |
0.51 |
|
| 2010 |
Eizirik E, Murphy WJ, Koepfli KP, Johnson WE, Dragoo JW, Wayne RK, O'Brien SJ. Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Molecular Phylogenetics and Evolution. 56: 49-63. PMID 20138220 DOI: 10.1016/J.Ympev.2010.01.033 |
0.615 |
|
| 2009 |
Slater GJ, Thalmann O, Leonard JA, Schweizer RM, Koepfli KP, Pollinger JP, Rawlence NJ, Austin JJ, Cooper A, Wayne RK. Evolutionary history of the Falklands wolf. Current Biology : Cb. 19: R937-8. PMID 19889366 DOI: 10.1016/J.Cub.2009.09.018 |
0.714 |
|
| 2008 |
Koepfli KP, Deere KA, Slater GJ, Begg C, Begg K, Grassman L, Lucherini M, Veron G, Wayne RK. Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. Bmc Biology. 6: 10. PMID 18275614 DOI: 10.1186/1741-7007-6-10 |
0.649 |
|
| 2008 |
Koepfli KP, Kanchanasaka B, Sasaki H, Jacques H, Louie KDY, Hoai T, Dang NX, Geffen E, Gutleb A, Han SY, Heggberget TM, LaFontaine L, Lee H, Melisch R, Ruiz-Olmo J, et al. Establishing the foundation for an applied molecular taxonomy of otters in Southeast Asia Conservation Genetics. 9: 1589-1604. DOI: 10.1007/S10592-007-9498-5 |
0.593 |
|
| 2007 |
Brown DM, Brenneman RA, Koepfli KP, Pollinger JP, Milá B, Georgiadis NJ, Louis EE, Grether GF, Jacobs DK, Wayne RK. Extensive population genetic structure in the giraffe. Bmc Biology. 5: 57. PMID 18154651 DOI: 10.1186/1741-7007-5-57 |
0.588 |
|
| 2007 |
Koepfli KP, Gompper ME, Eizirik E, Ho CC, Linden L, Maldonado JE, Wayne RK. Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange. Molecular Phylogenetics and Evolution. 43: 1076-95. PMID 17174109 DOI: 10.1016/J.Ympev.2006.10.003 |
0.641 |
|
| 2006 |
Koepfli KP, Jenks SM, Eizirik E, Zahirpour T, Van Valkenburgh B, Wayne RK. Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix. Molecular Phylogenetics and Evolution. 38: 603-20. PMID 16503281 DOI: 10.1016/J.Ympev.2005.10.017 |
0.634 |
|
| 2005 |
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, ... ... Koepfli KP, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 438: 803-19. PMID 16341006 DOI: 10.1038/Nature04338 |
0.632 |
|
| 2003 |
Koepfli KP, Wayne RK. Type I STS markers are more informative than cytochrome B in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora). Systematic Biology. 52: 571-93. PMID 14530127 DOI: 10.1080/10635150390235368 |
0.599 |
|
| 2003 |
Amrine-Madsen H, Koepfli KP, Wayne RK, Springer MS. A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Molecular Phylogenetics and Evolution. 28: 225-40. PMID 12878460 DOI: 10.1016/S1055-7903(03)00118-0 |
0.621 |
|
| 2000 |
Dallas JF, Carss DN, Marshall F, Koepfli KP, Kruuk H, Piertney SB, Bacon PJ. Sex identification of the Eurasian otter Lutra lutra by PCR typing of spraints Conservation Genetics. 1: 181-183. DOI: 10.1023/A:1026551510861 |
0.306 |
|
| 1998 |
Koepfli KP, Wayne RK. Phylogenetic relationships of otters (Carnivora: Mustelidae) based on mitochondrial cytochrome b sequences Journal of Zoology. 246: 401-416. DOI: 10.1017/S0952836998009820 |
0.395 |
|
| 1997 |
Wayne RK, Geffen E, Girman DJ, Koepfli KP, Lau LM, Marshall CR. Molecular systematics of the Canidae. Systematic Biology. 46: 622-53. PMID 11975336 DOI: 10.1093/Sysbio/46.4.622 |
0.623 |
|
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