| Year |
Citation |
Score |
| 2018 |
Chang YK, Zuo Z, Stormo GD. Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq. Bmc Molecular Biology. 19: 5. PMID 29587652 DOI: 10.1186/s12867-018-0106-7 |
0.68 |
|
| 2018 |
Ruan S, Stormo GD. Comparison of discriminative motif optimization using matrix and DNA shape-based models. Bmc Bioinformatics. 19: 86. PMID 29510689 DOI: 10.1186/s12859-018-2104-7 |
0.52 |
|
| 2017 |
Zuo Z, Roy B, Chang YK, Granas D, Stormo GD. Measuring quantitative effects of methylation on transcription factor-DNA binding affinity. Science Advances. 3: eaao1799. PMID 29159284 DOI: 10.1126/sciadv.aao1799 |
0.72 |
|
| 2017 |
Hu C, Malik V, Chang YK, Veerapandian V, Srivastava Y, Huang YH, Hou L, Cojocaru V, Stormo GD, Jauch R. Coop-seq analysis demonstrates that Sox2 evokes latent specificities in the DNA recognition by Pax6. Journal of Molecular Biology. PMID 29050852 DOI: 10.1016/j.jmb.2017.10.013 |
0.52 |
|
| 2017 |
Ruan S, Stormo GD. Inherent limitations of probabilistic models for protein-DNA binding specificity. Plos Computational Biology. 13: e1005638. PMID 28686588 DOI: 10.1371/journal.pcbi.1005638 |
0.52 |
|
| 2017 |
Roy B, Zuo Z, Stormo GD. Quantitative specificity of STAT1 and several variants. Nucleic Acids Research. PMID 28510715 DOI: 10.1093/nar/gkx393 |
0.68 |
|
| 2017 |
Ruan S, Joshua Swamidass S, Stormo GD. BEESEM: Estimation of Binding Energy Models Using HT-SELEX Data. Bioinformatics (Oxford, England). PMID 28379348 DOI: 10.1093/bioinformatics/btx191 |
0.52 |
|
| 2017 |
Xiao S, Lu J, Sridhar B, Cao X, Yu P, Zhao T, Chen CC, McDee D, Sloofman L, Wang Y, Rivas-Astroza M, Telugu BP, Levasseur D, Zhang K, Liang H, ... ... Stormo G, et al. SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination. Cell Reports. 18: 3117-3128. PMID 28355564 DOI: 10.1016/j.celrep.2017.02.070 |
0.48 |
|
| 2016 |
Chang YK, Srivastava Y, Hu C, Joyce A, Yang X, Zuo Z, Havranek JJ, Stormo GD, Jauch R. Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq. Nucleic Acids Research. PMID 27915232 DOI: 10.1093/nar/gkw1198 |
0.68 |
|
| 2016 |
Stormo GD, Roy B. DNA Structure Helps Predict Protein Binding. Cell Systems. 3: 216-218. PMID 27684185 DOI: 10.1016/j.cels.2016.09.004 |
0.4 |
|
| 2016 |
Spivak AT, Stormo GD. Combinatorial cis-Regulation in Saccharomyces Species. G3 (Bethesda, Md.). PMID 26772747 DOI: 10.1534/g3.115.024331 |
1 |
|
| 2015 |
Zuo Z, Chang Y, Stormo GD. A quantitative understanding of lac repressor's binding specificity and flexibility. Quantitative Biology (Beijing, China). 3: 69-80. PMID 26752632 DOI: 10.1007/s40484-015-0044-z |
0.68 |
|
| 2015 |
Sasse SK, Zuo Z, Kadiyala V, Zhang L, Pufall MA, Jain MK, Phang TL, Stormo GD, Gerber AN. Response Element Composition Governs Correlations Between Binding Site Affinity and Transcription in Glucocorticoid Receptor Feed-forward Loops. The Journal of Biological Chemistry. PMID 26088140 DOI: 10.1074/jbc.M115.668558 |
1 |
|
| 2015 |
Elliott G, Hong C, Xing X, Zhou X, Li D, Coarfa C, Bell RJ, Maire CL, Ligon KL, Sigaroudinia M, Gascard P, Tlsty TD, Harris RA, Schalkwyk LC, Bilenky M, ... ... Stormo GD, et al. Intermediate DNA methylation is a conserved signature of genome regulation. Nature Communications. 6: 6363. PMID 25691127 DOI: 10.1038/ncomms7363 |
1 |
|
| 2015 |
Stormo GD, Zuo Z, Chang YK. Spec-seq: determining protein-DNA-binding specificity by sequencing. Briefings in Functional Genomics. 14: 30-8. PMID 25362070 DOI: 10.1093/bfgp/elu043 |
1 |
|
| 2014 |
Zuo Z, Stormo GD. High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding. Genetics. 198: 1329-43. PMID 25209146 DOI: 10.1534/genetics.114.170100 |
1 |
|
| 2014 |
Visvikis O, Ihuegbu N, Labed SA, Luhachack LG, Alves AM, Wollenberg AC, Stuart LM, Stormo GD, Irazoqui JE. Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. Immunity. 40: 896-909. PMID 24882217 DOI: 10.1016/j.immuni.2014.05.002 |
1 |
|
| 2014 |
Gupta A, Christensen RG, Bell HA, Goodwin M, Patel RY, Pandey M, Enuameh MS, Rayla AL, Zhu C, Thibodeau-Beganny S, Brodsky MH, Joung JK, Wolfe SA, Stormo GD. An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins. Nucleic Acids Research. 42: 4800-12. PMID 24523353 DOI: 10.1093/nar/gku132 |
1 |
|
| 2014 |
Patel RY, Stormo GD. Discriminative motif optimization based on perceptron training. Bioinformatics (Oxford, England). 30: 941-8. PMID 24369152 DOI: 10.1093/bioinformatics/btt748 |
1 |
|
| 2013 |
Stormo GD. An Overview of RNA Sequence Analyses: Structure Prediction, ncRNA Gene Identification, and RNAi Design. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 11: 12.1.1-3. PMID 26270170 DOI: 10.1002/0471250953.bi1201s43 |
1 |
|
| 2013 |
Albee AJ, Kwan AL, Lin H, Granas D, Stormo GD, Dutcher SK. Identification of cilia genes that affect cell-cycle progression using whole-genome transcriptome analysis in Chlamydomonas reinhardtti. G3 (Bethesda, Md.). 3: 979-91. PMID 23604077 DOI: 10.1534/g3.113.006338 |
1 |
|
| 2013 |
Enuameh MS, Asriyan Y, Richards A, Christensen RG, Hall VL, Kazemian M, Zhu C, Pham H, Cheng Q, Blatti C, Brasefield JA, Basciotta MD, Ou J, McNulty JC, Zhu LJ, ... ... Stormo GD, et al. Global analysis of Drosophila Cysâ‚‚-Hisâ‚‚ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Research. 23: 928-40. PMID 23471540 DOI: 10.1101/gr.151472.112 |
1 |
|
| 2013 |
Zhu C, Gupta A, Hall VL, Rayla AL, Christensen RG, Dake B, Lakshmanan A, Kuperwasser C, Stormo GD, Wolfe SA. Using defined finger-finger interfaces as units of assembly for constructing zinc-finger nucleases. Nucleic Acids Research. 41: 2455-65. PMID 23303772 DOI: 10.1093/nar/gks1357 |
1 |
|
| 2012 |
Coronnello C, Hartmaier R, Arora A, Huleihel L, Pandit KV, Bais AS, Butterworth M, Kaminski N, Stormo GD, Oesterreich S, Benos PV. Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density. Plos Computational Biology. 8: e1002830. PMID 23284279 DOI: 10.1371/journal.pcbi.1002830 |
1 |
|
| 2012 |
Christensen RG, Enuameh MS, Noyes MB, Brodsky MH, Wolfe SA, Stormo GD. Recognition models to predict DNA-binding specificities of homeodomain proteins. Bioinformatics (Oxford, England). 28: i84-9. PMID 22689783 DOI: 10.1093/bioinformatics/bts202 |
1 |
|
| 2012 |
Gupta A, Christensen RG, Rayla AL, Lakshmanan A, Stormo GD, Wolfe SA. An optimized two-finger archive for ZFN-mediated gene targeting. Nature Methods. 9: 588-90. PMID 22543349 DOI: 10.1038/nmeth.1994 |
1 |
|
| 2012 |
Zhao G, Ihuegbu N, Lee M, Schriefer L, Wang T, Stormo GD. Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans. G3 (Bethesda, Md.). 2: 469-81. PMID 22540038 DOI: 10.1534/g3.111.001081 |
1 |
|
| 2012 |
Chu SW, Noyes MB, Christensen RG, Pierce BG, Zhu LJ, Weng Z, Stormo GD, Wolfe SA. Exploring the DNA-recognition potential of homeodomains. Genome Research. 22: 1889-98. PMID 22539651 DOI: 10.1101/gr.139014.112 |
1 |
|
| 2012 |
Zhao Y, Ruan S, Pandey M, Stormo GD. Improved models for transcription factor binding site identification using nonindependent interactions. Genetics. 191: 781-90. PMID 22505627 DOI: 10.1534/genetics.112.138685 |
1 |
|
| 2012 |
Ihuegbu NE, Stormo GD, Buhler J. Fast, sensitive discovery of conserved genome-wide motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 139-47. PMID 22300316 DOI: 10.1089/cmb.2011.0249 |
1 |
|
| 2012 |
Spivak AT, Stormo GD. ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species. Nucleic Acids Research. 40: D162-8. PMID 22140105 DOI: 10.1093/nar/gkr1180 |
1 |
|
| 2011 |
Motlhabi LM, Stormo GD. Assessing the effects of symmetry on motif discovery and modeling. Plos One. 6: e24908. PMID 21949783 DOI: 10.1371/journal.pone.0024908 |
1 |
|
| 2011 |
Zhao Y, Stormo GD. Quantitative analysis demonstrates most transcription factors require only simple models of specificity. Nature Biotechnology. 29: 480-3. PMID 21654662 DOI: 10.1038/nbt.1893 |
1 |
|
| 2011 |
Stormo GD. An introduction to recognizing functional domains. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.1. PMID 21633944 DOI: 10.1002/0471250953.bi0201s34 |
1 |
|
| 2011 |
Christensen RG, Gupta A, Zuo Z, Schriefer LA, Wolfe SA, Stormo GD. A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity. Nucleic Acids Research. 39: e83. PMID 21507886 DOI: 10.1093/nar/gkr239 |
1 |
|
| 2011 |
Stormo GD. Maximally efficient modeling of DNA sequence motifs at all levels of complexity. Genetics. 187: 1219-24. PMID 21300846 DOI: 10.1534/genetics.110.126052 |
1 |
|
| 2011 |
Grimm AA, Brace CS, Wang T, Stormo GD, Imai S. A nutrient-sensitive interaction between Sirt1 and HNF-1α regulates Crp expression. Aging Cell. 10: 305-17. PMID 21176092 DOI: 10.1111/j.1474-9726.2010.00667.x |
1 |
|
| 2010 |
Kwan AL, Dutcher SK, Stormo GD. Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation. Proceedings / Annual Ieee International Symposium On Bioinformatics and Bioengineering (Bibe). Ieee International Symposium On Bioinformatics and Bioengineering. 99-105. PMID 21655203 DOI: 10.1109/BIBE.2010.24 |
1 |
|
| 2010 |
Stormo GD, Zhao Y. Determining the specificity of protein-DNA interactions. Nature Reviews. Genetics. 11: 751-60. PMID 20877328 DOI: 10.1038/nrg2845 |
1 |
|
| 2010 |
Stormo GD. Motif discovery using expectation maximization and Gibbs' sampling. Methods in Molecular Biology (Clifton, N.J.). 674: 85-95. PMID 20827587 DOI: 10.1007/978-1-60761-854-6_6 |
1 |
|
| 2010 |
Sahota G, Stormo GD. Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes. Bioinformatics (Oxford, England). 26: 2672-7. PMID 20807838 DOI: 10.1093/bioinformatics/btq501 |
1 |
|
| 2010 |
Baxevanis AD, Davison DB, Page RDM, Petsko GA, Stein LD, Stormo GD, Yates J. Current Protocols in Bioinformatics: Preface Current Protocols in Bioinformatics. iii-vi. DOI: 10.1002/0471250953.biprefs01 |
1 |
|
| 2009 |
Zhao Y, Granas D, Stormo GD. Inferring binding energies from selected binding sites. Plos Computational Biology. 5: e1000590. PMID 19997485 DOI: 10.1371/journal.pcbi.1000590 |
1 |
|
| 2009 |
Stormo GD. An introduction to sequence similarity ("homology") searching. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 3.1 3.1.1-7. PMID 19728288 DOI: 10.1002/0471250953.bi0301s27 |
1 |
|
| 2009 |
Homsi DS, Gupta V, Stormo GD. Modeling the quantitative specificity of DNA-binding proteins from example binding sites. Plos One. 4: e6736. PMID 19707584 DOI: 10.1371/journal.pone.0006736 |
1 |
|
| 2009 |
Schraml BU, Hildner K, Ise W, Lee WL, Smith WA, Solomon B, Sahota G, Sim J, Mukasa R, Cemerski S, Hatton RD, Stormo GD, Weaver CT, Russell JH, Murphy TL, et al. The AP-1 transcription factor Batf controls T(H)17 differentiation. Nature. 460: 405-9. PMID 19578362 DOI: 10.1038/nature08114 |
1 |
|
| 2009 |
Kwan AL, Li L, Kulp DC, Dutcher SK, Stormo GD. Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2. Bmc Genomics. 10: 210. PMID 19422688 DOI: 10.1186/1471-2164-10-210 |
1 |
|
| 2009 |
Foat BC, Stormo GD. Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. Molecular Systems Biology. 5: 268. PMID 19401680 DOI: 10.1038/msb.2009.24 |
1 |
|
| 2009 |
Xu X, Ji Y, Stormo GD. Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines. Plos Computational Biology. 5: e1000338. PMID 19343219 DOI: 10.1371/journal.pcbi.1000338 |
1 |
|
| 2008 |
Liu J, Xu X, Stormo GD. The cis-regulatory map of Shewanella genomes. Nucleic Acids Research. 36: 5376-90. PMID 18701645 DOI: 10.1093/nar/gkn515 |
1 |
|
| 2008 |
Liu J, Stormo GD. Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors. Bioinformatics (Oxford, England). 24: 1850-7. PMID 18586699 DOI: 10.1093/bioinformatics/btn331 |
1 |
|
| 2008 |
Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell. 133: 1277-89. PMID 18585360 DOI: 10.1016/j.cell.2008.05.023 |
1 |
|
| 2008 |
Chang LW, Payton JE, Yuan W, Ley TJ, Nagarajan R, Stormo GD. Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia. Genome Biology. 9: R38. PMID 18291030 DOI: 10.1186/gb-2008-9-2-r38 |
1 |
|
| 2008 |
Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM. Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Research. 36: e8. PMID 18086703 DOI: 10.1093/nar/gkm1117 |
1 |
|
| 2008 |
Laramie JM, Chung TP, Brownstein B, Stormo GD, Cobb JP. Transcriptional profiles of human epithelial cells in response to heat: computational evidence for novel heat shock proteins. Shock (Augusta, Ga.). 29: 623-30. PMID 17885648 DOI: 10.1097/shk.0b013e318157f33c |
1 |
|
| 2007 |
Souvenir R, Buhler J, Stormo G, Zhang W. An iterative method for selecting degenerate multiplex PCR primers. Methods in Molecular Biology (Clifton, N.J.). 402: 245-68. PMID 17951799 DOI: 10.1007/978-1-59745-528-2_12 |
1 |
|
| 2007 |
Davies SR, Chang LW, Patra D, Xing X, Posey K, Hecht J, Stormo GD, Sandell LJ. Computational identification and functional validation of regulatory motifs in cartilage-expressed genes. Genome Research. 17: 1438-47. PMID 17785538 DOI: 10.1101/gr.6224007 |
1 |
|
| 2007 |
Stormo GD, Zhao Y. Putting numbers on the network connections. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 717-21. PMID 17620328 DOI: 10.1002/bies.20617 |
1 |
|
| 2007 |
Rochat RH, de las Fuentes L, Stormo G, Davila-Roman VG, Gu CC. A novel method combining linkage disequilibrium information and imputed functional knowledge for tagSNP selection. Human Heredity. 64: 243-9. PMID 17587853 DOI: 10.1159/000104227 |
1 |
|
| 2007 |
Zhou Y, Cras-Méneur C, Ohsugi M, Stormo GD, Permutt MA. A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments. Bioinformatics (Oxford, England). 23: 2073-9. PMID 17550914 DOI: 10.1093/bioinformatics/btm292 |
1 |
|
| 2007 |
Xu X, Ji Y, Stormo GD. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. Bioinformatics (Oxford, England). 23: 1883-91. PMID 17537756 DOI: 10.1093/bioinformatics/btm272 |
1 |
|
| 2007 |
Chang LW, Fontaine BR, Stormo GD, Nagarajan R. PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis. Nucleic Acids Research. 35: W238-44. PMID 17517777 DOI: 10.1093/nar/gkm308 |
1 |
|
| 2007 |
Zhao G, Chang KY, Varley K, Stormo GD. Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach. Plos One. 2: e262. PMID 17327921 DOI: 10.1371/journal.pone.0000262 |
1 |
|
| 2007 |
Zhao G, Schriefer LA, Stormo GD. Identification of muscle-specific regulatory modules in Caenorhabditis elegans. Genome Research. 17: 348-57. PMID 17284674 DOI: 10.1101/gr.5989907 |
1 |
|
| 2007 |
Bulyk ML, Hartemink AJ, Fraenkel E, Stormo G. DNA-protein interactions: Integrating structure, sequence, and function Pacific Symposium On Biocomputing 2007, Psb 2007. 470-471. |
1 |
|
| 2006 |
Stormo GD. An introduction to recognizing functional domains. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.1. PMID 18428762 DOI: 10.1002/0471250953.bi0201s15 |
1 |
|
| 2006 |
Stormo GD. An overview of RNA structure prediction and applications to RNA gene prediction and RNAi design. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.1. PMID 18428758 DOI: 10.1002/0471250953.bi1201s13 |
1 |
|
| 2006 |
Chung TP, Laramie JM, Meyer DJ, Downey T, Tam LH, Ding H, Buchman TG, Karl I, Stormo GD, Hotchkiss RS, Cobb JP. Molecular diagnostics in sepsis: from bedside to bench. Journal of the American College of Surgeons. 203: 585-598. PMID 17084318 DOI: 10.1016/j.jamcollsurg.2006.06.028 |
1 |
|
| 2006 |
DeMets DL, Stormo G, Boehnke M, Louis TA, Taylor J, Dixon D. Training of the next generation of biostatisticians: a call to action in the U.S. Statistics in Medicine. 25: 3415-29. PMID 16927449 DOI: 10.1002/sim.2668 |
1 |
|
| 2006 |
Agrawal R, Stormo GD. Using mRNAs lengths to accurately predict the alternatively spliced gene products in Caenorhabditis elegans. Bioinformatics (Oxford, England). 22: 1239-44. PMID 16595562 DOI: 10.1093/bioinformatics/btl076 |
1 |
|
| 2006 |
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. Bmc Bioinformatics. 7: 113. PMID 16522208 DOI: 10.1186/1471-2105-7-113 |
1 |
|
| 2006 |
Chang LW, Nagarajan R, Magee JA, Milbrandt J, Stormo GD. A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles. Genome Research. 16: 405-13. PMID 16449500 DOI: 10.1101/gr.4303406 |
1 |
|
| 2006 |
Ong CT, Cheng HT, Chang LW, Ohtsuka T, Kageyama R, Stormo GD, Kopan R. Target selectivity of vertebrate notch proteins. Collaboration between discrete domains and CSL-binding site architecture determines activation probability. The Journal of Biological Chemistry. 281: 5106-19. PMID 16365048 DOI: 10.1074/jbc.M506108200 |
1 |
|
| 2006 |
Magee JA, Chang LW, Stormo GD, Milbrandt J. Direct, androgen receptor-mediated regulation of the FKBP5 gene via a distal enhancer element. Endocrinology. 147: 590-8. PMID 16210365 DOI: 10.1210/en.2005-1001 |
1 |
|
| 2005 |
Wang T, Stormo GD. Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America. 102: 17400-5. PMID 16301543 DOI: 10.1073/pnas.0505147102 |
1 |
|
| 2005 |
Liu J, Stormo GD. Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions. Nucleic Acids Research. 33: e141. PMID 16186128 DOI: 10.1093/nar/gni139 |
1 |
|
| 2005 |
Liu J, Stormo GD. Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein. Bmc Bioinformatics. 6: 176. PMID 16014175 DOI: 10.1186/1471-2105-6-176 |
1 |
|
| 2005 |
Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research. 33: W389-92. PMID 15980495 DOI: 10.1093/nar/gki439 |
1 |
|
| 2005 |
Gershenzon NI, Stormo GD, Ioshikhes IP. Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites. Nucleic Acids Research. 33: 2290-301. PMID 15849315 DOI: 10.1093/nar/gki519 |
1 |
|
| 2005 |
Agrawal R, Stormo GD. Editing efficiency of a Drosophila gene correlates with a distant splice site selection. Rna (New York, N.Y.). 11: 563-6. PMID 15840811 DOI: 10.1261/rna.7280605 |
1 |
|
| 2005 |
Havgaard JH, Lyngsø RB, Stormo GD, Gorodkin J. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics (Oxford, England). 21: 1815-24. PMID 15657094 DOI: 10.1093/bioinformatics/bti279 |
1 |
|
| 2005 |
Tan K, McCue LA, Stormo GD. Making connections between novel transcription factors and their DNA motifs. Genome Research. 15: 312-20. PMID 15653829 DOI: 10.1101/gr.3069205 |
1 |
|
| 2005 |
Freimuth RR, Stormo GD, McLeod HL. PolyMAPr: programs for polymorphism database mining, annotation, and functional analysis. Human Mutation. 25: 110-7. PMID 15643605 DOI: 10.1002/humu.20123 |
1 |
|
| 2005 |
Li JB, Zhang M, Dutcher SK, Stormo GD. Procom: a web-based tool to compare multiple eukaryotic proteomes. Bioinformatics (Oxford, England). 21: 1693-4. PMID 15564299 DOI: 10.1093/bioinformatics/bti161 |
1 |
|
| 2004 |
GuhaThakurta D, Schriefer LA, Waterston RH, Stormo GD. Novel transcription regulatory elements in Caenorhabditis elegans muscle genes Genome Research. 14: 2457-2468. PMID 15574824 DOI: 10.1101/gr.2961104 |
1 |
|
| 2004 |
Lin Y, Stormo GD, Taghert PH. The neuropeptide pigment-dispersing factor coordinates pacemaker interactions in the Drosophila circadian system. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 7951-7. PMID 15356209 DOI: 10.1523/JNEUROSCI.2370-04.2004 |
1 |
|
| 2004 |
Man TK, Yang JS, Stormo GD. Quantitative modeling of DNA-protein interactions: effects of amino acid substitutions on binding specificity of the Mnt repressor. Nucleic Acids Research. 32: 4026-32. PMID 15289576 DOI: 10.1093/nar/gkh729 |
1 |
|
| 2004 |
Ruan J, Stormo GD, Zhang W. ILM: a web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Research. 32: W146-9. PMID 15215368 DOI: 10.1093/nar/gkh444 |
1 |
|
| 2004 |
Zhao T, Chang LW, McLeod HL, Stormo GD. PromoLign: a database for upstream region analysis and SNPs. Human Mutation. 23: 534-9. PMID 15146456 DOI: 10.1002/humu.20049 |
1 |
|
| 2004 |
Akopyants NS, Matlib RS, Bukanova EN, Smeds MR, Brownstein BH, Stormo GD, Beverley SM. Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major. Molecular and Biochemical Parasitology. 136: 71-86. PMID 15138069 DOI: 10.1016/j.molbiopara.2004.03.002 |
1 |
|
| 2004 |
Li JB, Gerdes JM, Haycraft CJ, Fan Y, Teslovich TM, May-Simera H, Li H, Blacque OE, Li L, Leitch CC, Lewis RA, Green JS, Parfrey PS, Leroux MR, Davidson WS, ... ... Stormo GD, et al. Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene. Cell. 117: 541-52. PMID 15137946 DOI: 10.1016/S0092-8674(04)00450-7 |
1 |
|
| 2004 |
Hu Y, Wang T, Stormo GD, Gordon JI. RNA interference of achaete-scute homolog 1 in mouse prostate neuroendocrine cells reveals its gene targets and DNA binding sites. Proceedings of the National Academy of Sciences of the United States of America. 101: 5559-64. PMID 15060276 DOI: 10.1073/pnas.0306988101 |
1 |
|
| 2004 |
Ji Y, Xu X, Stormo GD. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Bioinformatics (Oxford, England). 20: 1591-602. PMID 14962926 DOI: 10.1093/bioinformatics/bth131 |
1 |
|
| 2004 |
Friedman CP, Altman RB, Kohane IS, McCormick KA, Miller PL, Ozbolt JG, Shortliffe EH, Stormo GD, Szczepaniak MC, Tuck D, Williamson J. Training the next generation of informaticians: the impact of "BISTI" and bioinformatics--a report from the American College of Medical Informatics. Journal of the American Medical Informatics Association : Jamia. 11: 167-72. PMID 14764617 DOI: 10.1197/jamia.M1520 |
1 |
|
| 2004 |
Ruan J, Stormo GD, Zhang W. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinformatics (Oxford, England). 20: 58-66. PMID 14693809 DOI: 10.1093/bioinformatics/btg373 |
1 |
|
| 2003 |
Wang T, Stormo GD. Combining phylogenetic data with co-regulated genes to identify regulatory motifs. Bioinformatics (Oxford, England). 19: 2369-80. PMID 14668220 DOI: 10.1093/bioinformatics/btg329 |
1 |
|
| 2003 |
Liu J, Tan K, Stormo GD. Computational identification of the Spo0A-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria. Nucleic Acids Research. 31: 6891-903. PMID 14627822 DOI: 10.1093/nar/gkg879 |
1 |
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| 2003 |
Johnston M, Stormo GD. Evolution. Heirlooms in the attic. Science (New York, N.Y.). 302: 997-9. PMID 14605357 DOI: 10.1126/science.1092271 |
1 |
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| 2003 |
Li JB, Lin S, Jia H, Wu H, Roe BA, Kulp D, Stormo GD, Dutcher SK. Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III. The Journal of Eukaryotic Microbiology. 50: 145-55. PMID 12836870 DOI: 10.1111/j.1550-7408.2003.tb00109.x |
1 |
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| 2003 |
Stormo GD. New tricks for an old dogma: riboswitches as cis-only regulatory systems. Molecular Cell. 11: 1419-20. PMID 12820954 DOI: 10.1016/S1097-2765(03)00240-5 |
1 |
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| 2003 |
Ruan J, Stormo GD, Zhang W. An iterative loop matching approach to the prediction of RNA secondary structures with pseudoknots Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 519-520. DOI: 10.1109/CSB.2003.1227394 |
1 |
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| 2003 |
Rzhetsky A, Bussemaker H, Liu J, Koonin E, Stormo G, Borodovsky M, Halloran ME, Kreamer E, Logsdon J, Voit E, Xu Y, Zhulin I. The Fourth Georgia Tech-University of Georgia International Conference in Bioinformatics: In silico biology, biological networks, from genomics to epidemiology (November 13-16, 2003, Atlanta, Georgia, USA) Bioinformatics. 19: 1867-1868. DOI: 10.1093/bioinformatics/btg365 |
1 |
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| 2003 |
Souvenir R, Buhler J, Stormo G, Zhang W. Selecting degenerate multiplex PCR primers Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2812: 512-526. |
1 |
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| 2002 |
Silbaq FS, Ruttenberg SE, Stormo GD. Specificity of Mnt 'master residue' obtained from in vivo and in vitro selections. Nucleic Acids Research. 30: 5539-48. PMID 12490722 DOI: 10.1093/nar/gkf684 |
1 |
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| 2002 |
Cobb JP, Laramie JM, Stormo GD, Morrissey JJ, Shannon WD, Qiu Y, Karl IE, Buchman TG, Hotchkiss RS. Sepsis gene expression profiling: murine splenic compared with hepatic responses determined by using complementary DNA microarrays. Critical Care Medicine. 30: 2711-21. PMID 12483063 DOI: 10.1097/01.CCM.0000034693.46903.ED |
1 |
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| 2002 |
Benos PV, Lapedes AS, Stormo GD. Probabilistic code for DNA recognition by proteins of the EGR family. Journal of Molecular Biology. 323: 701-27. PMID 12419259 DOI: 10.1016/S0022-2836(02)00917-8 |
1 |
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| 2002 |
Benos PV, Bulyk ML, Stormo GD. Additivity in protein-DNA interactions: how good an approximation is it? Nucleic Acids Research. 30: 4442-51. PMID 12384591 |
1 |
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| 2002 |
Gu CC, Rao DC, Stormo G, Hicks C, Province MA. Role of gene expression microarray analysis in finding complex disease genes. Genetic Epidemiology. 23: 37-56. PMID 12112247 DOI: 10.1002/gepi.220 |
1 |
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| 2002 |
Lin Y, Han M, Shimada B, Wang L, Gibler TM, Amarakone A, Awad TA, Stormo GD, Van Gelder RN, Taghert PH. Influence of the period-dependent circadian clock on diurnal, circadian, and aperiodic gene expression in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 99: 9562-7. PMID 12089325 DOI: 10.1073/pnas.132269699 |
1 |
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| 2002 |
Benos PV, Lapedes AS, Stormo GD. Is there a code for protein-DNA recognition? Probab(ilistical)ly. . . Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 24: 466-75. PMID 12001270 DOI: 10.1002/bies.10073 |
1 |
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| 2002 |
Stormo GD, Tan K. Mining genome databases to identify and understand new gene regulatory systems. Current Opinion in Microbiology. 5: 149-53. PMID 11934610 DOI: 10.1016/S1369-5274(02)00309-0 |
1 |
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| 2002 |
Guhathakurta D, Schriefer LA, Hresko MC, Waterston RH, Stormo GD. Identifying muscle regulatory elements and genes in the nematode Caenorhabditis elegans. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 425-436. PMID 11928496 |
1 |
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| 2002 |
Beverley SM, Akopyants NS, Goyard S, Matlib RS, Gordon JL, Brownstein BH, Stormo GD, Bukanova EN, Hott CT, Li F, MacMillan S, Muo JN, Schwertman LA, Smeds MR, Wang Y. Putting the Leishmania genome to work: functional genomics by transposon trapping and expression profiling. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 357: 47-53. PMID 11839181 DOI: 10.1098/rstb.2001.1048 |
1 |
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| 2001 |
Gorodkin J, Lyngso RB, Stormo GD. A mini-greedy algorithm for faster structural RNA stem-loop search Genome Informatics. International Conference On Genome Informatics. 12: 184-193. PMID 11791237 |
1 |
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| 2001 |
Li F, Stormo GD. Selection of optimal DNA oligos for gene expression arrays Bioinformatics. 17: 1067-1076. PMID 11724738 |
1 |
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| 2001 |
Stormo GD, Ji Y. Do mRNAs act as direct sensors of small molecules to control their expression? Proceedings of the National Academy of Sciences of the United States of America. 98: 9465-7. PMID 11504932 DOI: 10.1073/pnas.181334498 |
1 |
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| 2001 |
GuhaThakurta D, Stormo GD. Identifying target sites for cooperatively binding factors. Bioinformatics (Oxford, England). 17: 608-21. PMID 11448879 |
1 |
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| 2001 |
Man TK, Stormo GD. Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay Nucleic Acids Research. 29: 2471-2478. PMID 11410653 |
1 |
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| 2001 |
Gorodkin J, Stricklin SL, Stormo GD. Discovering common stem-loop motifs in unaligned RNA sequences Nucleic Acids Research. 29: 2135-2144. PMID 11353083 |
1 |
|
| 2001 |
Tan K, Moreno-Hagelsieb G, Collado-Vides J, Stormo GD. A comparative genomics approach to prediction of new members of regulons Genome Research. 11: 566-584. PMID 11282972 DOI: 10.1101/gr.149301 |
1 |
|
| 2001 |
Benos PV, Lapedes AS, Fields DS, Stormo GD. SAMIE: statistical algorithm for modeling interaction energies Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 115-126. PMID 11262933 |
1 |
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| 2001 |
Cobb JP, Brownstein BH, Watson MA, Shannon WD, Laramie JM, Qiu Y, Stormo GD, Morrissey JJ, Buchman TG, Karl IE, Hotchkiss RS. Injury in the era of genomics. Shock (Augusta, Ga.). 15: 165-70. PMID 11236897 |
1 |
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| 2001 |
Logsdon J, Fickett J, Koonin E, Sali A, Stormo G, Borodovsky M. The third Georgia Tech-Emory International Conference on Bioinformatics - In silico biology: Bioinformatics after the human genome (November 15-18, 2001, Atlanta, Georgia, USA) Bioinformatics. 17: 859-861. |
1 |
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| 2000 |
Kelley ST, Akmaev VR, Stormo GD. Improved statistical methods reveal direct interactions between 16S and 23S rRNA Nucleic Acids Research. 28: 4938-4943. PMID 11121485 |
1 |
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| 2000 |
Akmaev VR, Kelley ST, Stormo GD. Phylogenetically enhanced statistical tools for RNA structure prediction Bioinformatics. 16: 501-512. PMID 10980147 |
1 |
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| 2000 |
Workman CT, Stormo GD. ANN-Spec: a method for discovering transcription factor binding sites with improved specificity Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 467-478. PMID 10902194 |
1 |
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| 2000 |
Stormo GD. DNA binding sites: Representation and discovery Bioinformatics. 16: 16-23. PMID 10812473 |
1 |
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| 2000 |
Stormo GD. Gene-finding approaches for eukaryotes Genome Research. 10: 394-397. PMID 10779479 DOI: 10.1101/gr.10.4.394 |
1 |
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| 2000 |
Li F, Stormo GD. Selecting optimum DNA oligos for microarrays Proceedings - Ieee International Symposium On Bio-Informatics and Biomedical Engineering, Bibe 2000. 200-207. DOI: 10.1109/BIBE.2000.889608 |
1 |
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| 1999 |
Akmaev VR, Kelley ST, Stormo GD. A phylogenetic approach to RNA structure prediction Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 10-17. PMID 10786281 |
1 |
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| 1999 |
Hertz GZ, Stormo GD. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics (Oxford, England). 15: 563-77. PMID 10487864 |
1 |
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| 1999 |
Weaver DC, Workman CT, Stormo GD. Modeling regulatory networks with weight matrices Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 112-123. PMID 10380190 |
1 |
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| 1999 |
Baldi P, Borodovsky M, Brunak S, Burge C, Fickett J, Henikoff S, Koonin E, Sali A, Sander C, Stormo G. The Second International Conference on Bioinformatics: Sequence, Structure and Function, Atlanta, Georgia, November 11-14 1999: Editorial Bioinformatics. 15: 865-866. |
1 |
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| 1999 |
Stormo GD. Editorial Bioinformatics. 15: 1. |
1 |
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| 1998 |
Stormo GD. Information content and free energy in DNA-protein interactions [1] Journal of Theoretical Biology. 195: 135-137. PMID 9802956 DOI: 10.1006/jtbi.1998.0785 |
1 |
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| 1998 |
Tabaska JE, Cary RB, Gabow HN, Stormo GD. An RNA folding method capable of identifying pseudoknots and base triples Bioinformatics. 14: 691-699. PMID 9789095 DOI: 10.1093/bioinformatics/14.8.691 |
1 |
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| 1998 |
Stormo GD, Fields DS. Specificity, free energy and information content in protein-DNA interactions Trends in Biochemical Sciences. 23: 109-113. PMID 9581503 DOI: 10.1016/S0968-0004(98)01187-6 |
1 |
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| 1998 |
Levy S, Compagnoni L, Myers EW, Stormo GD. Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics (Oxford, England). 14: 74-80. PMID 9520504 |
1 |
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| 1997 |
Gorodkin J, Heyer LJ, Brunak S, Stormo GD. Displaying the information contents of structural RNA alignments: The structure logos Computer Applications in the Biosciences. 13: 583-586. PMID 9475985 |
1 |
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| 1997 |
Tabaska JE, Stormo GD. Automated alignment of RNA sequences to pseudoknotted structures Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 5: 311-318. PMID 9322055 |
1 |
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| 1997 |
Gorodkin J, Heyer LJ, Stormo GD. Finding common sequence and structure motifs in a set of RNA sequences Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 5: 120-123. PMID 9322025 |
1 |
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| 1997 |
Gorodkin J, Heyer LJ, Stormo GD. Finding the most significant common sequence and structure motifs in a set of RNA sequences Nucleic Acids Research. 25: 3724-3732. PMID 9278497 DOI: 10.1093/nar/25.18.3724 |
1 |
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| 1997 |
Fields DS, He YY, Al-Uzri AY, Stormo GD. Quantitative specificity of the Mnt repressor Journal of Molecular Biology. 271: 178-194. PMID 9268651 DOI: 10.1006/jmbi.1997.1171 |
1 |
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| 1997 |
Chen QK, Hertz GZ, Stormo GD. PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices. Computer Applications in the Biosciences : Cabios. 13: 29-35. PMID 9088706 |
1 |
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| 1996 |
Hertz GZ, Stormo GD. Escherichia coli promoter sequences: analysis and prediction. Methods in Enzymology. 273: 30-42. PMID 8791597 |
1 |
|
| 1995 |
Chen QK, Hertz GZ, Stormo GD. MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. Computer Applications in the Biosciences : Cabios. 11: 563-6. PMID 8590181 DOI: 10.1093/bioinformatics/11.5.563 |
1 |
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| 1995 |
Ulyanov AV, Stormo GD. Multi-alphabet consensus algorithm for identification of low specificity protein-DNA interactions Nucleic Acids Research. 23: 1434-1440. PMID 7753637 DOI: 10.1093/nar/23.8.1434 |
1 |
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| 1995 |
Snyder EE, Stormo GD. Identification of protein coding regions in genomic DNA Journal of Molecular Biology. 248: 1-18. PMID 7731036 DOI: 10.1006/jmbi.1995.0198 |
1 |
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| 1995 |
Cui Y, Wang Q, Stormo GD, Calvo JM. A consensus sequence for binding of Lrp to DNA Journal of Bacteriology. 177: 4872-4880. PMID 7665463 |
1 |
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| 1995 |
Cary RB, Stormo GD. Graph-theoretic approach to RNA modeling using comparative data Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 3: 75-80. PMID 7584469 |
1 |
|
| 1995 |
Chen P, Ailion M, Bobik T, Stormo G, Roth J. Five promoters integrate control of the cob/pdu regulon in Salmonella typhimurium Journal of Bacteriology. 177: 5401-5410. PMID 7559322 |
1 |
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| 1995 |
Stormo GD. Editorial announcement Bioinformatics. 11: 1. DOI: 10.1093/bioinformatics/11.1.1 |
1 |
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| 1994 |
Barrick D, Villanueba K, Childs J, Kalil R, Schneider TD, Lawrence CE, Gold L, Stormo GD. Quantitative analysis of ribosome binding sites in E.coli. Nucleic Acids Research. 22: 1287-95. PMID 8165145 DOI: 10.1093/nar/22.7.1287 |
1 |
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| 1994 |
Melov S, Hertz GZ, Stormo GD, Johnson TE. Detection of deletions in the mitochondrial genome of Caenorhabditis elegans. Nucleic Acids Research. 22: 1075-8. PMID 8152911 DOI: 10.1093/nar/22.6.1075 |
1 |
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| 1994 |
Fields DS, Stormo GD. Quantitative DNA sequencing to determine the relative protein-DNA binding constants to multiple DNA sequences Analytical Biochemistry. 219: 230-239. PMID 8080080 DOI: 10.1006/abio.1994.1262 |
1 |
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| 1994 |
Stormo GD, Haussler D. Optimally parsing a sequence into different classes based on multiple types of evidence Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 2: 369-375. PMID 7584414 |
1 |
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| 1994 |
Heumann JM, Lapedes AS, Stormo GD. Neural networks for determining protein specificity and multiple alignment of binding sites Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 2: 188-194. PMID 7584389 |
1 |
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| 1993 |
Stormo GD, Strobl S, Yoshioka M, Lee JS. Specificity of the Mnt protein: Independent effects of mutations at different positions in the operator Journal of Molecular Biology. 229: 821-826. PMID 8445649 |
1 |
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| 1993 |
Snyder EE, Stormo GD. Identification of coding regions in genomic DNA sequences: An application of dynamic programming and neural networks Nucleic Acids Research. 21: 607-613. PMID 8441672 DOI: 10.1093/nar/21.3.607 |
1 |
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| 1993 |
Prestridge DS, Stormo G. SIGNAL SCAN 3.0: New database and program features Computer Applications in the Biosciences. 9: 113-115. PMID 8435761 |
1 |
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| 1993 |
Selick HE, Stormo GD, Dyson RL, Alberts BM. Analysis of five presumptive protein-coding sequences clustered between the primosome genes, 41 and 61, of bacteriophages T4, T2, and T6 Journal of Virology. 67: 2305-2316. PMID 8383243 |
1 |
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| 1993 |
Prestridge DS, Stormo G. Cabios applications notes signal scan 3.0: New database and program features Bioinformatics. 9: 113-115. DOI: 10.1093/bioinformatics/9.1.113 |
1 |
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| 1992 |
Cardon LR, Stormo GD. Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments Journal of Molecular Biology. 223: 159-170. PMID 1731067 DOI: 10.1016/0022-2836(92)90723-W |
1 |
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| 1992 |
Mount SM, Burks C, Hertz G, Stormo GD, White O, Fields C. Splicing signals in Drosophila: intron size, information content, and consensus sequences. Nucleic Acids Research. 20: 4255-62. PMID 1508718 DOI: 10.1093/nar/20.16.4255 |
1 |
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| 1992 |
Gutell RR, Power A, Hertz GZ, Putz EJ, Stormo GD. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Research. 20: 5785-95. PMID 1454539 DOI: 10.1093/nar/20.21.5785 |
1 |
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| 1992 |
Ringquist S, Shinedling S, Barrick D, Green L, Binkley J, Stormo GD, Gold L. Translation initiation in Escherichia coli: Sequences within the ribosome-binding site Molecular Microbiology. 6: 1219-1229. PMID 1375310 DOI: 10.1111/j.1365-2958.1992.tb01561.x |
1 |
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| 1991 |
Stormo GD, Yoshioka M. Specificity of the Mnt protein determined by binding to randomized operators Proceedings of the National Academy of Sciences of the United States of America. 88: 5699-5703. PMID 2062848 |
1 |
|
| 1991 |
Arvidson DN, Youderian P, Schneider TD, Stormo GD. Automated kinetic assay of beta-galactosidase activity. Biotechniques. 11: 733-4, 736, 738. PMID 1809325 |
1 |
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| 1991 |
Stormo GD. Probing information content of DNA-binding sites Methods in Enzymology. 208: 458-467. PMID 1664028 |
1 |
|
| 1990 |
Gold L, Stormo GD. High-level translation initiation Methods in Enzymology. 185: 89-93. PMID 2199797 DOI: 10.1016/0076-6879(90)85009-D |
1 |
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| 1990 |
Hertz GZ, Hartzell GW, Stormo GD. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Computer Applications in the Biosciences : Cabios. 6: 81-92. PMID 2193692 DOI: 10.1093/bioinformatics/6.2.81 |
1 |
|
| 1990 |
Stormo GD. Consensus patterns in DNA Methods in Enzymology. 183: 211-221. PMID 2179676 |
1 |
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| 1990 |
Ruffner DE, Stormo GD, Uhlenbeck OC. Sequence requirements of the hammerhead RNA self-cleavage reaction Biochemistry. 29: 10695-10702. PMID 1703005 |
1 |
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| 1989 |
Stormo GD, Hartzell GW. Identifying protein-binding sites from unaligned DNA fragments. Proceedings of the National Academy of Sciences of the United States of America. 86: 1183-7. PMID 2919167 |
1 |
|
| 1989 |
Schneider TD, Stormo GD. Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique. Nucleic Acids Research. 17: 659-74. PMID 2915926 DOI: 10.1093/nar/17.2.659 |
1 |
|
| 1988 |
Stormo GD. Computer methods for analyzing sequence recognition of nucleic acids Annual Review of Biophysics and Biophysical Chemistry. 17: 241-263. PMID 3293587 |
1 |
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| 1988 |
McPheeters DS, Stormo GD, Gold L. Autogenous regulatory site on the bacteriophage T4 gene 32 messenger RNA Journal of Molecular Biology. 201: 517-535. PMID 3262167 DOI: 10.1016/0022-2836(88)90634-1 |
1 |
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| 1988 |
Tuerk C, Gauss P, Thermes C, Groebe DR, Gayle M, Guild N, Stormo G, d'Aubenton-Carafa Y, Uhlenbeck OC, Tinoco I. CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes Proceedings of the National Academy of Sciences of the United States of America. 85: 1364-1368. PMID 2449689 |
1 |
|
| 1987 |
Romaniuk PJ, Lowary P, Wu HN, Stormo G, Uhlenbeck OC. RNA binding site of R17 coat protein. Biochemistry. 26: 1563-8. PMID 3297131 |
1 |
|
| 1986 |
Clift B, Haussler D, McConnell R, Schneider TD, Stormo GD. Sequence landscapes. Nucleic Acids Research. 14: 141-58. PMID 3753762 DOI: 10.1093/nar/14.1.141 |
1 |
|
| 1986 |
Mcpheeters DS, Christensen A, Young ET, Stormo G, Gold L. Translationsl regulation of expression of the bacteriophage T4 lysozyme gene Nucleic Acids Research. 14: 5813-5826. PMID 3526285 DOI: 10.1093/nar/14.14.5813 |
1 |
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| 1986 |
Schneider TD, Stormo GD, Gold L, Ehrenfeucht A. Information content of binding sites on nucleotide sequences. Journal of Molecular Biology. 188: 415-31. PMID 3525846 |
1 |
|
| 1986 |
Stormo GD, Schneider TD, Gold L. Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucleic Acids Research. 14: 6661-79. PMID 3092188 DOI: 10.1093/nar/14.16.6661 |
1 |
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| 1984 |
Schneider TD, Stormo GD, Yarus MA, Gold L. Delila system tools. Nucleic Acids Research. 12: 129-40. PMID 6694897 |
1 |
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| 1984 |
Trojanowska M, Miller ES, Karam J, Stormo G, Gold L. The bacteriophage T4 regA gene: Primary sequence of a translational repressor Nucleic Acids Research. 12: 5979-5993. PMID 6473098 DOI: 10.1093/nar/12.15.5979 |
1 |
|
| 1984 |
Munson LM, Stormo GD, Niece RL, Reznikoff WS. lacZ translation initiation mutations. Journal of Molecular Biology. 177: 663-83. PMID 6434747 DOI: 10.1016/0022-2836(84)90043-3 |
1 |
|
| 1984 |
Gold L, Stormo G, Saunders R. Escherichia coli translational initiation factor IF3: A unique case of translational regulation Proceedings of the National Academy of Sciences of the United States of America. 81: 7061-7065. PMID 6390429 |
1 |
|
| 1982 |
Schneider TD, Stormo GD, Haemer JS, Gold L. A design for computer nucleic-acid-sequence storage, retrieval, and manipulation. Nucleic Acids Research. 10: 3013-24. PMID 7099972 DOI: 10.1093/nar/10.9.3013 |
1 |
|
| 1982 |
Stormo GD, Schneider TD, Gold L, Ehrenfeucht A. Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. Nucleic Acids Research. 10: 2997-3011. PMID 7048259 DOI: 10.1093/nar/10.9.2997 |
1 |
|
| 1982 |
Stormo GD, Schneider TD, Gold LM. Characterization of translational initiation sites in E. coli. Nucleic Acids Research. 10: 2971-96. PMID 7048258 DOI: 10.1093/nar/10.9.2971 |
1 |
|
| 1982 |
von Hippel PH, Kowalczykowski SC, Lonberg N, Newport JW, Paul LS, Stormo GD, Gold L. Autoregulation of gene expression. Quantitative evaluation of the expression and function of the bacteriophage T4 gene 32 (single-stranded DNA binding) protein system. Journal of Molecular Biology. 162: 795-818. PMID 6984860 DOI: 10.1016/0022-2836(82)90548-4 |
1 |
|
| 1981 |
Gold L, Pribnow D, Schneider T, Shinedling S, Singer BS, Stormo G. Translational initiation in prokaryotes Annual Review of Microbiology. 35: 365-403. PMID 6170248 |
1 |
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