Emily S. Charlson, Ph.D. - Publications

2012 Cell and Molecular Biology University of Pennsylvania, Philadelphia, PA, United States 
Bioinformatics, Molecular Biology, Immunology

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Beck JM, Schloss PD, Venkataraman A, Twigg H, Jablonski KA, Bushman FD, Campbell TB, Charlson ES, Collman RG, Crothers K, Curtis JL, Drews KL, Flores SC, Fontenot AP, Foulkes MA, et al. Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals. American Journal of Respiratory and Critical Care Medicine. 192: 1335-44. PMID 26247840 DOI: 10.1164/Rccm.201501-0128Oc  0.32
2013 Huang YJ, Charlson ES, Collman RG, Colombini-Hatch S, Martinez FD, Senior RM. The role of the lung microbiome in health and disease. A National Heart, Lung, and Blood Institute workshop report. American Journal of Respiratory and Critical Care Medicine. 187: 1382-7. PMID 23614695 DOI: 10.1164/Rccm.201303-0488Ws  0.32
2013 Lozupone C, Cota-Gomez A, Palmer BE, Linderman DJ, Charlson ES, Sodergren E, Mitreva M, Abubucker S, Martin J, Yao G, Campbell TB, Flores SC, Ackerman G, Stombaugh J, Ursell L, et al. Widespread colonization of the lung by Tropheryma whipplei in HIV infection. American Journal of Respiratory and Critical Care Medicine. 187: 1110-7. PMID 23392441 DOI: 10.1164/Rccm.201211-2145Oc  0.32
2012 Charlson ES, Bittinger K, Chen J, Diamond JM, Li H, Collman RG, Bushman FD. Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. Plos One. 7: e42786. PMID 22970118 DOI: 10.1371/Journal.Pone.0042786  0.32
2012 Charlson ES, Diamond JM, Bittinger K, Fitzgerald AS, Yadav A, Haas AR, Bushman FD, Collman RG. Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant. American Journal of Respiratory and Critical Care Medicine. 186: 536-45. PMID 22798321 DOI: 10.1164/Rccm.201204-0693Oc  0.32
2012 Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, Collman RG, Bushman FD, Li H. Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics (Oxford, England). 28: 2106-13. PMID 22711789 DOI: 10.1093/Bioinformatics/Bts342  0.32
2012 Leiser OP, Charlson ES, Gerken H, Misra R. Reversal of the ΔdegP phenotypes by a novel rpoE allele of Escherichia coli. Plos One. 7: e33979. PMID 22439016 DOI: 10.1371/Journal.Pone.0033979  0.32
2011 Knights D, Kuczynski J, Charlson ES, Zaneveld J, Mozer MC, Collman RG, Bushman FD, Knight R, Kelley ST. Bayesian community-wide culture-independent microbial source tracking Nature Methods. 8: 761-765. PMID 21765408 DOI: 10.1038/Nmeth.1650  0.32
2011 Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, Bushman FD, Collman RG. Topographical continuity of bacterial populations in the healthy human respiratory tract. American Journal of Respiratory and Critical Care Medicine. 184: 957-63. PMID 21680950 DOI: 10.1164/Rccm.201104-0655Oc  0.32
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Charlson E, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  0.32
2010 Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, Sinha R, Hwang J, Bushman FD, Collman RG. Disordered microbial communities in the upper respiratory tract of cigarette smokers. Plos One. 5: e15216. PMID 21188149 DOI: 10.1371/Journal.Pone.0015216  0.32
2010 Bennion D, Charlson ES, Coon E, Misra R. Dissection of β-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli. Molecular Microbiology. 77: 1153-71. PMID 20598079 DOI: 10.1111/J.1365-2958.2010.07280.X  0.32
2009 Gerken H, Charlson ES, Cicirelli EM, Kenney LJ, Misra R. MzrA: a novel modulator of the EnvZ/OmpR two-component regulon. Molecular Microbiology. 72: 1408-22. PMID 19432797 DOI: 10.1111/J.1365-2958.2009.06728.X  0.32
2006 Charlson ES, Werner JN, Misra R. Differential effects of yfgL mutation on Escherichia coli outer membrane proteins and lipopolysaccharide. Journal of Bacteriology. 188: 7186-94. PMID 17015657 DOI: 10.1128/Jb.00571-06  0.32
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