Year |
Citation |
Score |
2024 |
Rashidi A, Gem H, McLean JS, Kerns K, Dean DR, Dey N, Minot S. Multi-cohort shotgun metagenomic analysis of oral and gut microbiota overlap in healthy adults. Scientific Data. 11: 75. PMID 38228614 DOI: 10.1038/s41597-024-02916-x |
0.309 |
|
2023 |
Lee EM, Srinivasan S, Purvine SO, Fiedler TL, Leiser OP, Proll SC, Minot SS, Deatherage Kaiser BL, Fredricks DN. Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome. Msystems. e0067822. PMID 37350639 DOI: 10.1128/msystems.00678-22 |
0.309 |
|
2021 |
Flores Ramos S, Brugger SD, Escapa IF, Skeete CA, Cotton SL, Eslami SM, Gao W, Bomar L, Tran TH, Jones DS, Minot S, Roberts RJ, Johnston CD, Lemon KP. Genomic Stability and Genetic Defense Systems in , a Candidate Beneficial Bacterium from the Human Microbiome. Msystems. e0042521. PMID 34546072 DOI: 10.1128/mSystems.00425-21 |
0.363 |
|
2021 |
Minot SS, Barry KC, Kasman C, Golob JL, Willis AD. geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response. Genome Biology. 22: 135. PMID 33952321 DOI: 10.1186/s13059-021-02355-6 |
0.386 |
|
2020 |
Golob JL, Minot SS. In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision. Bmc Bioinformatics. 21: 459. PMID 33059593 DOI: 10.1186/s12859-020-03802-0 |
0.303 |
|
2020 |
Peddu V, Shean RC, Xie H, Shrestha L, Perchetti GA, Minot SS, Roychoudhury P, Huang ML, Nalla A, Reddy SB, Phung Q, Reinhardt A, Jerome KR, Greninger AL. Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization. Clinical Chemistry. PMID 32379863 DOI: 10.1093/Clinchem/Hvaa106 |
0.443 |
|
2020 |
Willis AD, Minot SS. Strategies to Facilitate Translational Advances from Microbiome Surveys. Trends in Microbiology. 28: 329-330. PMID 32298611 DOI: 10.1016/J.Tim.2020.02.002 |
0.326 |
|
2019 |
Minot SS, Willis AD. Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease. Microbiome. 7: 110. PMID 31370880 DOI: 10.1186/S40168-019-0722-6 |
0.417 |
|
2019 |
Minot SS. De novo Assembly Vastly Expands the Known Microbial Universe. Trends in Microbiology. PMID 30871856 DOI: 10.1016/J.Tim.2019.02.007 |
0.399 |
|
2017 |
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, et al. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. 18: 182. PMID 28934964 DOI: 10.1186/S13059-017-1299-7 |
0.409 |
|
2017 |
Ahsanuddin S, Afshinnekoo E, Gandara J, Hakyemezoğlu M, Bezdan D, Minot S, Greenfield N, Mason CE. Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications. Journal of Biomolecular Techniques : Jbt. PMID 28344519 DOI: 10.7171/Jbt.17-2801-008 |
0.409 |
|
2017 |
Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach. Gigascience. PMID 28327976 DOI: 10.1093/Gigascience/Gix007 |
0.467 |
|
2017 |
Hannigan GD, Zheng Q, Meisel JS, Minot SS, Bushman FD, Grice EA. Evolutionary and functional implications of hypervariable loci within the skin virome. Peerj. 5: e2959. PMID 28194314 DOI: 10.7717/Peerj.2959 |
0.487 |
|
2016 |
Sim JH, Truong C, Minot SS, Greenfield N, Budvytiene I, Lohith A, Anikst V, Pourmand N, Banaei N. Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing. Diagnostic Microbiology and Infectious Disease. PMID 27771207 DOI: 10.1016/J.Diagmicrobio.2016.09.023 |
0.326 |
|
2015 |
Palopoli MF, Fergus DJ, Minot S, Pei DT, Simison WB, Fernandez-Silva I, Thoemmes MS, Dunn RR, Trautwein M. Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages. Proceedings of the National Academy of Sciences of the United States of America. PMID 26668374 DOI: 10.1073/Pnas.1512609112 |
0.408 |
|
2015 |
Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA. The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome. Mbio. 6. PMID 26489866 DOI: 10.1128/Mbio.01578-15 |
0.542 |
|
2015 |
Kilianski A, Haas JL, Corriveau EJ, Liem AT, Willis KL, Kadavy DR, Rosenzweig CN, Minot SS. Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer. Gigascience. 4: 12. PMID 25815165 DOI: 10.1186/S13742-015-0051-Z |
0.455 |
|
2014 |
Palopoli MF, Minot S, Pei D, Satterly A, Endrizzi J. Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: novel gene arrangement, truncated tRNA genes, and ancient divergence between species. Bmc Genomics. 15: 1124. PMID 25515815 DOI: 10.1186/1471-2164-15-1124 |
0.423 |
|
2013 |
Minot S, Bryson A, Chehoud C, Wu GD, Lewis JD, Bushman FD. Rapid evolution of the human gut virome. Proceedings of the National Academy of Sciences of the United States of America. 110: 12450-5. PMID 23836644 DOI: 10.1073/Pnas.1300833110 |
0.588 |
|
2012 |
Stoltzfus JD, Minot S, Berriman M, Nolan TJ, Lok JB. RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways. Plos Neglected Tropical Diseases. 6: e1854. PMID 23145190 DOI: 10.1371/Journal.Pntd.0001854 |
0.332 |
|
2012 |
Minot S, Wu GD, Lewis JD, Bushman FD. Conservation of gene cassettes among diverse viruses of the human gut. Plos One. 7: e42342. PMID 22900013 DOI: 10.1371/Journal.Pone.0042342 |
0.594 |
|
2012 |
Minot S, Melo MB, Li F, Lu D, Niedelman W, Levine SS, Saeij JP. Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity. Proceedings of the National Academy of Sciences of the United States of America. 109: 13458-63. PMID 22847430 DOI: 10.1073/Pnas.1117047109 |
0.395 |
|
2012 |
Minot S, Grunberg S, Wu GD, Lewis JD, Bushman FD. Hypervariable loci in the human gut virome. Proceedings of the National Academy of Sciences of the United States of America. 109: 3962-6. PMID 22355105 DOI: 10.1073/Pnas.1119061109 |
0.584 |
|
2011 |
Minot S, Sinha R, Chen J, Li H, Keilbaugh SA, Wu GD, Lewis JD, Bushman FD. The human gut virome: inter-individual variation and dynamic response to diet. Genome Research. 21: 1616-25. PMID 21880779 DOI: 10.1101/Gr.122705.111 |
0.579 |
|
2011 |
Minot S, Sinha R, Chen J, Li H, Keilbaugh SA, Wu GD, Lewis JD, Bushman FD. Dynamic Response of the Human Virome to Dietary Intervention Gastroenterology. 140: S-265. DOI: 10.1016/S0016-5085(11)61060-3 |
0.419 |
|
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