| Year |
Citation |
Score |
| 2020 |
Swinehart WE, Deutsch CW, Sarachan KL, Luthra A, Bacusmo JM, de Crécy-Lagard V, Swairjo MA, Agris PF, Iwata-Reuyl D. Specificity in the Biosynthesis of the Universal tRNA Nucleoside N6-Threonylcarbamoyl Adenosine (t6A) - TsaD is the Gatekeeper. Rna (New York, N.Y.). PMID 32385138 DOI: 10.1261/Rna.075747.120 |
0.434 |
|
| 2020 |
Vangaveti S, Cantara WA, Spears JL, DeMirci H, Murphy FV, Ranganathan SV, Sarachan KL, Agris PF. A structural basis for restricted codon recognition mediated by 2-thiocytidine in tRNA containing a wobble position inosine. Journal of Molecular Biology. PMID 31945376 DOI: 10.1016/J.Jmb.2019.12.016 |
0.785 |
|
| 2019 |
Elliott BA, Ho HT, Ranganathan SV, Vangaveti S, Ilkayeva O, Abou Assi H, Choi AK, Agris PF, Holley CL. Modification of messenger RNA by 2'-O-methylation regulates gene expression in vivo. Nature Communications. 10: 3401. PMID 31363086 DOI: 10.1038/S41467-019-11375-7 |
0.334 |
|
| 2019 |
Frohlich KM, Weintraub S, Bell JT, Todd GC, Väre VY, Schneider R, Kloos ZA, Tabe ES, Cantara WA, Stark C, Onwuanaibe U, Duffy BC, Basanta-Sanchez M, Kitchen DB, McDonough K, ... Agris PF, et al. Discovery of small molecule antibiotics against a unique tRNA-mediated regulation of transcription in Gram-positive bacteria. Chemmedchem. PMID 30707489 DOI: 10.1002/Cmdc.201800744 |
0.738 |
|
| 2019 |
Frohlich KM, Weintraub SF, Bell JT, Todd GC, Väre VYP, Schneider R, Kloos ZA, Tabe ES, Cantara WA, Stark CJ, Onwuanaibe UJ, Duffy BC, Basanta‐Sanchez M, Kitchen DB, McDonough KA, ... Agris PF, et al. Cover Feature: Discovery of Small‐Molecule Antibiotics against a Unique tRNA‐Mediated Regulation of Transcription in Gram‐Positive Bacteria (ChemMedChem 7/2019) Chemmedchem. 14: 713-713. DOI: 10.1002/Cmdc.201900178 |
0.695 |
|
| 2017 |
Agris PF, Eruysal ER, Narendran A, Väre VYP, Vangaveti S, Ranganathan SV. Celebrating Wobble Decoding: Half a century and still much is new. Rna Biology. 0. PMID 28812932 DOI: 10.1080/15476286.2017.1356562 |
0.488 |
|
| 2017 |
Agris PF, Narendran A, Sarachan K, Väre VYP, Eruysal E. The Importance of Being Modified: The Role of RNA Modifications in Translational Fidelity. The Enzymes. 41: 1-50. PMID 28601219 DOI: 10.1016/Bs.Enz.2017.03.005 |
0.519 |
|
| 2017 |
Väre VY, Eruysal ER, Narendran A, Sarachan KL, Agris PF. Chemical and Conformational Diversity of Modified Nucleosides Affects tRNA Structure and Function. Biomolecules. 7. PMID 28300792 DOI: 10.3390/biom7010029 |
0.354 |
|
| 2016 |
Basanta-Sanchez M, Wang R, Liu Z, Ye X, Li M, Shi X, Agris P, Zhou Y, Huang Y, Sheng J. TET1-mediated Oxidation of 5-formylcytosine (5fC) to 5-carboxycytosine (5caC) in RNA. Chembiochem : a European Journal of Chemical Biology. PMID 27805801 DOI: 10.1002/Cbic.201600328 |
0.362 |
|
| 2016 |
Xiao X, Zhao B, Agris PF, Hall CK. Simulation Study of the Ability of a Computationally-Designed Peptide to Recognize Target tRNA(Lys3) and Other Decoy tRNAs. Protein Science : a Publication of the Protein Society. PMID 27680513 DOI: 10.1002/Pro.3056 |
0.376 |
|
| 2016 |
Xiao X, Agris PF, Hall CK. Introducing folding stability into the score function for computational design of RNA-binding peptides boosts the probability of success. Proteins. PMID 26914059 DOI: 10.1002/Prot.25021 |
0.304 |
|
| 2016 |
Vangaveti S, Ranganathan S, Sarachan KL, Agris PF, Chen A, Cantara W. Understanding the Effect of Post Transcriptional Modifications in the Anticodon Stem Loop of E.coli tRNA Arginine Biophysical Journal. 110: 235a. DOI: 10.1016/J.Bpj.2015.11.1297 |
0.782 |
|
| 2015 |
Xiao X, Agris PF, Hall CK. Designing Peptide Sequences in Flexible Chain Conformations to Bind RNA: A Search Algorithm Combining Monte Carlo, Self-Consistent Mean Field and Concerted Rotation Techniques. Journal of Chemical Theory and Computation. 11: 740-752. PMID 26579605 DOI: 10.1021/Ct5008247 |
0.344 |
|
| 2015 |
Basanta-Sanchez M, Temple S, Ansari SA, D'Amico A, Agris PF. Attomole quantification and global profile of RNA modifications: Epitranscriptome of human neural stem cells. Nucleic Acids Research. PMID 26438536 DOI: 10.1093/Nar/Gkv971 |
0.358 |
|
| 2015 |
Sarachan KL, Cantara WA, Spears JL, Dimirci H, Murphy FV, Ranganathan S, Chen A, Agris PF. 107 Modifications modulate anticodon loop dynamics and codon recognition in E. coli tRNA(Arg1,2). Journal of Biomolecular Structure & Dynamics. 33: 67. PMID 26103318 DOI: 10.1080/07391102.2015.1032669 |
0.738 |
|
| 2015 |
Hong S, Harris KA, Fanning KD, Sarachan KL, Frohlich KM, Agris PF. Evidence that antibiotics bind to human mitochondrial ribosomal RNA has implications for aminoglycoside toxicity. The Journal of Biological Chemistry. PMID 26060252 DOI: 10.1074/Jbc.M115.655092 |
0.459 |
|
| 2015 |
Harris KA, Bobay BG, Sarachan KL, Sims AF, Bilbille Y, Deutsch C, Iwata-Reuyl D, Agris PF. NMR-based structural analysis of threonylcarbamoyl-AMP synthase and its substrate interactions. The Journal of Biological Chemistry. PMID 26060251 DOI: 10.1074/Jbc.M114.631242 |
0.395 |
|
| 2015 |
Agris PF. The importance of being modified: an unrealized code to RNA structure and function. Rna (New York, N.Y.). 21: 552-4. PMID 25780134 DOI: 10.1261/Rna.050575.115 |
0.413 |
|
| 2015 |
Xiao X, Agris PF, Hall CK. Molecular recognition mechanism of peptide chain bound to the tRNA(Lys3) anticodon loop in silico. Journal of Biomolecular Structure & Dynamics. 33: 14-27. PMID 24417415 DOI: 10.1080/07391102.2013.869660 |
0.345 |
|
| 2014 |
Spears JL, Xiao X, Hall CK, Agris PF. Amino acid signature enables proteins to recognize modified tRNA. Biochemistry. 53: 1125-33. PMID 24483944 DOI: 10.1021/Bi401174H |
0.425 |
|
| 2014 |
Xiao X, Hall CK, Agris PF. The design of a peptide sequence to inhibit HIV replication: a search algorithm combining Monte Carlo and self-consistent mean field techniques. Journal of Biomolecular Structure & Dynamics. 32: 1523-36. PMID 24147736 DOI: 10.1080/07391102.2013.825757 |
0.364 |
|
| 2014 |
Hakker L, Marchi AN, Harris KA, LaBean TH, Agris PF. Structural and thermodynamic analysis of modified nucleosides in self-assembled DNA cross-tiles. Journal of Biomolecular Structure & Dynamics. 32: 319-29. PMID 23527476 DOI: 10.1080/07391102.2012.763184 |
0.308 |
|
| 2013 |
Harris KA, Shekhtman A, Agris PF. Specific RNA-protein interactions detected with saturation transfer difference NMR. Rna Biology. 10: 1307-11. PMID 23949611 DOI: 10.4161/Rna.25948 |
0.402 |
|
| 2013 |
Cantara WA, Murphy FV, Demirci H, Agris PF. Expanded use of sense codons is regulated by modified cytidines in tRNA. Proceedings of the National Academy of Sciences of the United States of America. 110: 10964-9. PMID 23781103 DOI: 10.1073/Pnas.1222641110 |
0.766 |
|
| 2013 |
Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ. Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position. Journal of Molecular Biology. 425: 3888-906. PMID 23727144 DOI: 10.1016/J.Jmb.2013.05.018 |
0.733 |
|
| 2013 |
Harris KA, Bobay BG, Bilbille Y, Agris PF. 27 Structural analyses by NMR reveal insights into the enzymatic mechanism of tRNA t6A modification biosynthesis Journal of Biomolecular Structure and Dynamics. 31: 17-17. DOI: 10.1080/07391102.2013.786459 |
0.454 |
|
| 2013 |
Cantara WA, Vendeix FA, Murphy IV FV, Leszcyńska G, Harris K, Gustilo EM, Sproat B, Kaiser R, Malkiewicz A, Agris PF. 112 The importance of being modified: tautomeric forms of pyrimidines provide expanded use of the genetic code Journal of Biomolecular Structure and Dynamics. 31: 71-72. DOI: 10.1080/07391102.2013.786354 |
0.786 |
|
| 2012 |
Breaker RR, Conklin DS, Gold L, Söll D, Montimurro JS, Agris PF. RNA science and its applications-a look toward the future: Albany, NY USA, November 3-4, 2011. Rna Biology. 9: 1050-3. PMID 22858674 DOI: 10.4161/Rna.21209 |
0.509 |
|
| 2012 |
Cantara WA, Bilbille Y, Kim J, Kaiser R, Leszczyńska G, Malkiewicz A, Agris PF. Modifications modulate anticodon loop dynamics and codon recognition of E. coli tRNA(Arg1,2). Journal of Molecular Biology. 416: 579-97. PMID 22240457 DOI: 10.1016/J.Jmb.2011.12.054 |
0.8 |
|
| 2012 |
Vendeix FA, Murphy FV, Cantara WA, Leszczy?ska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism. Journal of Molecular Biology. 416: 467-85. PMID 22227389 DOI: 10.1016/J.Jmb.2011.12.048 |
0.798 |
|
| 2011 |
Harris KA, Jones V, Bilbille Y, Swairjo MA, Agris PF. YrdC exhibits properties expected of a subunit for a tRNA threonylcarbamoyl transferase. Rna (New York, N.Y.). 17: 1678-87. PMID 21775474 DOI: 10.1261/Rna.2592411 |
0.481 |
|
| 2011 |
Graham WD, Barley-Maloney L, Stark CJ, Kaur A, Stolarchuk C, Stolyarchuk K, Sproat B, Leszczynska G, Malkiewicz A, Safwat N, Mucha P, Guenther R, Agris PF. Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic. Journal of Molecular Biology. 410: 698-715. PMID 21762809 DOI: 10.1016/J.Jmb.2011.04.025 |
0.451 |
|
| 2011 |
Bilbille Y, Gustilo EM, Harris KA, Jones CN, Lusic H, Kaiser RJ, Delaney MO, Spremulli LL, Deiters A, Agris PF. The human mitochondrial tRNAMet: structure/function relationship of a unique modification in the decoding of unconventional codons. Journal of Molecular Biology. 406: 257-74. PMID 21168417 DOI: 10.1016/J.Jmb.2010.11.042 |
0.805 |
|
| 2011 |
Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF. The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Research. 39: D195-201. PMID 21071406 DOI: 10.1093/Nar/Gkq1028 |
0.729 |
|
| 2010 |
Scheunemann AE, Graham WD, Vendeix FA, Agris PF. Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA. Nucleic Acids Research. 38: 3094-105. PMID 20110260 DOI: 10.1093/Nar/Gkp1253 |
0.362 |
|
| 2009 |
Vendeix FA, Munoz AM, Agris PF. Free energy calculation of modified base-pair formation in explicit solvent: A predictive model. Rna (New York, N.Y.). 15: 2278-87. PMID 19861423 DOI: 10.1261/Rna.1734309 |
0.393 |
|
| 2009 |
Bilbille Y, Vendeix FA, Guenther R, Malkiewicz A, Ariza X, Vilarrasa J, Agris PF. The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs. Nucleic Acids Research. 37: 3342-53. PMID 19324888 DOI: 10.1093/Nar/Gkp187 |
0.447 |
|
| 2008 |
Lusic H, Gustilo EM, Vendeix FA, Kaiser R, Delaney MO, Graham WD, Moye VA, Cantara WA, Agris PF, Deiters A. Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNAMet. Nucleic Acids Research. 36: 6548-57. PMID 18927116 DOI: 10.1093/Nar/Gkn703 |
0.808 |
|
| 2008 |
Jones CN, Jones CI, Graham WD, Agris PF, Spremulli LL. A disease-causing point mutation in human mitochondrial tRNAMet rsults in tRNA misfolding leading to defects in translational initiation and elongation. The Journal of Biological Chemistry. 283: 34445-56. PMID 18835817 DOI: 10.1074/Jbc.M806992200 |
0.633 |
|
| 2008 |
Agris PF. Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications. Embo Reports. 9: 629-35. PMID 18552770 DOI: 10.1038/Embor.2008.104 |
0.498 |
|
| 2008 |
Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF. Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding. Biochemistry. 47: 6117-29. PMID 18473483 DOI: 10.1021/Bi702356J |
0.832 |
|
| 2008 |
Gustilo EM, Vendeix FA, Agris PF. tRNA's modifications bring order to gene expression. Current Opinion in Microbiology. 11: 134-40. PMID 18378185 DOI: 10.1016/J.Mib.2008.02.003 |
0.8 |
|
| 2007 |
Gustilo EM, Dubois DY, Lapointe J, Agris PF. E. coli glutamyl-tRNA synthetase is inhibited by anticodon stem-loop domains and a minihelix. Rna Biology. 4: 85-92. PMID 17671438 DOI: 10.4161/Rna.4.2.4736 |
0.809 |
|
| 2007 |
Weixlbaumer A, Murphy FV, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V. Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines. Nature Structural & Molecular Biology. 14: 498-502. PMID 17496902 DOI: 10.1038/Nsmb1242 |
0.504 |
|
| 2007 |
Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA. The Protein Journal. 26: 61-73. PMID 17237992 DOI: 10.1007/S10930-006-9046-Z |
0.429 |
|
| 2007 |
Agris PF, Vendeix FA, Graham WD. tRNA's wobble decoding of the genome: 40 years of modification. Journal of Molecular Biology. 366: 1-13. PMID 17187822 DOI: 10.1016/J.Jmb.2006.11.046 |
0.515 |
|
| 2007 |
Vendeix F, Dziergowska A, Gustilo E, Graham W, Sproat B, Malkiewicz A, Agris P. NMR solution structure of the anticodon of E.coli TRNA-VAL3 with 1 modification (M6A37) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Jr4/Pdb |
0.774 |
|
| 2007 |
Jones CN, Spremulli LL, Agris PF. Structural and biochemical investigation of disease causing mutations in human mitochondrial tRNA Met The Faseb Journal. 21. DOI: 10.1096/Fasebj.21.5.A279-B |
0.6 |
|
| 2006 |
Jones CI, Spencer AC, Hsu JL, Spremulli LL, Martinis SA, DeRider M, Agris PF. A counterintuitive Mg2+-dependent and modification-assisted functional folding of mitochondrial tRNAs. Journal of Molecular Biology. 362: 771-86. PMID 16949614 DOI: 10.1016/J.Jmb.2006.07.036 |
0.646 |
|
| 2006 |
Gagnon KT, Zhang X, Agris PF, Maxwell ES. Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling. Journal of Molecular Biology. 362: 1025-42. PMID 16949610 DOI: 10.1016/J.Jmb.2006.07.091 |
0.411 |
|
| 2006 |
Nelson AR, Henkin TM, Agris PF. tRNA regulation of gene expression: Interactions of an mRNA 5′-UTR with a regulatory tRNA Rna. 12: 1254-1261. PMID 16741230 DOI: 10.1261/Rna.29906 |
0.434 |
|
| 2004 |
Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF. The role of modifications in codon discrimination by tRNA(Lys)UUU. Nature Structural & Molecular Biology. 11: 1186-91. PMID 15558052 DOI: 10.1038/Nsmb861 |
0.518 |
|
| 2004 |
Guenther RH, Sit TL, Gracz HS, Dolan MA, Townsend HL, Liu G, Newman WH, Agris PF, Lommel SA. Structural characterization of an intermolecular RNA-RNA interaction involved in the transcription regulation element of a bipartite plant virus. Nucleic Acids Research. 32: 2819-28. PMID 15155850 DOI: 10.1093/Nar/Gkh585 |
0.385 |
|
| 2004 |
Mucha P, Szyk A, Rekowski P, Agris PF. Sequence-altered peptide adopts optimum conformation for modification-dependent binding of the yeast tRNAPhe anticodon domain. The Protein Journal. 23: 33-8. PMID 15115180 DOI: 10.1023/B:Jopc.0000016256.20648.0F |
0.385 |
|
| 2004 |
Phelps SS, Malkiewicz A, Agris PF, Joseph S. Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation. Journal of Molecular Biology. 338: 439-44. PMID 15081802 DOI: 10.1016/J.Jmb.2004.02.070 |
0.472 |
|
| 2004 |
Agris PF. Decoding the genome: a modified view. Nucleic Acids Research. 32: 223-38. PMID 14715921 DOI: 10.1093/Nar/Gkh185 |
0.509 |
|
| 2003 |
Stuart JW, Koshlap KM, Guenther R, Agris PF. Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe). Journal of Molecular Biology. 334: 901-18. PMID 14643656 DOI: 10.1016/J.Jmb.2003.09.058 |
0.445 |
|
| 2003 |
Mucha P, Szyk A, Rekowski P, Agris PF. Using capillary electrophoresis to study methylation effect on RNA-peptide interaction. Acta Biochimica Polonica. 50: 857-64. PMID 14515166 DOI: 10.18388/Abp.2003_3677 |
0.378 |
|
| 2002 |
Nobles KN, Yarian CS, Liu G, Guenther RH, Agris PF. Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding. Nucleic Acids Research. 30: 4751-60. PMID 12409466 DOI: 10.1093/Nar/Gkf595 |
0.809 |
|
| 2002 |
Mucha P, Szyk A, Rekowski P, Guenther R, Agris PF. Interaction of RNA with phage display selected peptides analyzed by capillary electrophoresis mobility shift assay. Rna (New York, N.Y.). 8: 698-704. PMID 12022235 DOI: 10.1017/S1355838202020319 |
0.328 |
|
| 2002 |
Yarian C, Townsend H, Czestkowski W, Sochacka E, Malkiewicz AJ, Guenther R, Miskiewicz A, Agris PF. Accurate translation of the genetic code depends on tRNA modified nucleosides. The Journal of Biological Chemistry. 277: 16391-5. PMID 11861649 DOI: 10.1074/Jbc.M200253200 |
0.821 |
|
| 2001 |
Mucha P, Szyk A, Rekowski P, Weiss PA, Agris PF. Anticodon domain methylated nucleosides of yeast tRNAPhe are significant recognition determinants in the binding of a phage display selected peptide Biochemistry. 40: 14191-14199. PMID 11714272 DOI: 10.1021/Bi010978O |
0.383 |
|
| 2000 |
Ashraf SS, Guenther RH, Ansari G, Malkiewicz A, Sochacka E, Agris PF. Role of modified nucleosides of yeast tRNAPhe in ribosomal binding Cell Biochemistry and Biophysics. 33: 241-252. PMID 11325044 DOI: 10.1385/Cbb:33:3:241 |
0.518 |
|
| 2000 |
Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF. Functional anticodon architecture of human tRNA(Lys3) includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A Biochemistry. 39: 13396-13404. PMID 11063577 DOI: 10.1021/Bi0013039 |
0.534 |
|
| 2000 |
Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species. Biochemistry. 39: 13390-5. PMID 11063576 DOI: 10.1021/Bi001302G |
0.819 |
|
| 2000 |
Sochacka E, Czerwinska G, Guenther R, Cain R, Agris PF, Malkiewicz A. Synthesis and properties of uniquely modified oligoribonucleotides: Yeast tRNA(Phe) fragments with 6-methyluridine and 5,6-dimethyluridine at site-specific positions Nucleosides, Nucleotides and Nucleic Acids. 19: 515-531. PMID 10843489 DOI: 10.1080/15257770008035004 |
0.451 |
|
| 2000 |
Sengupta R, Vainauskas S, Yarian C, Sochacka E, Malkiewicz A, Guenther RH, Koshlap KM, Agris PF. Modified constructs of the tRNA TPsiC domain to probe substrate conformational requirements of m(1)A(58) and m(5)U(54) tRNA methyltransferases. Nucleic Acids Research. 28: 1374-80. PMID 10684932 DOI: 10.1093/Nar/28.6.1374 |
0.782 |
|
| 1999 |
Ashraf SS, Guenther R, Agris PF. Orientation of the tRNA anticodon in the ribosomal P-site: Quantitative footprinting with U33-modified, anticodon stem and loop domains Rna. 5: 1191-1199. PMID 10496220 DOI: 10.1017/S1355838299990933 |
0.432 |
|
| 1999 |
Agris PF, Guenther R, Sochacka E, Newman W, Czerwińska G, Liu G, Ye W, Malkiewicz A. Thermodynamic contribution of nucleoside modifications to yeast tRNAPhe anticodon stem loop analogs Acta Biochimica Polonica. 46: 163-172. PMID 10453992 DOI: 10.18388/Abp.1999_4194 |
0.445 |
|
| 1999 |
Agris PF, Marchbank MT, Newman W, Guenther R, Ingram P, Swallow J, Mucha P, Szyk A, Rekowski P, Peletskaya E, Deutscher SL. Experimental models of protein-RNA interaction: Isolation and analyses of tRNA(Phe) and U1 snRNA-binding peptides from bacteriophage display libraries Journal of Protein Chemistry. 18: 425-435. PMID 10449040 DOI: 10.1023/A:1020688609121 |
0.415 |
|
| 1999 |
Yarian CS, Basti MM, Cain RJ, Ansari G, Guenther RH, Sochacka E, Czerwinska G, Malkiewicz A, Agris PF. Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39. Nucleic Acids Research. 27: 3543-9. PMID 10446245 DOI: 10.1093/Nar/27.17.3543 |
0.814 |
|
| 1999 |
Koshlap KM, Guenther R, Sochacka E, Malkiewicz A, Agris PF. A distinctive RNA fold: The solution structure of an analogue of the yeast tRNA(Phe) TΨC domain Biochemistry. 38: 8647-8656. PMID 10393540 DOI: 10.1021/Bi990118W |
0.501 |
|
| 1999 |
Ashraf SS, Ansari G, Guenther R, Sochacka E, Malkiewicz A, Agris PF. The uridine in 'U-turn': Contributions to tRNA-ribosomal binding Rna. 5: 503-511. PMID 10199567 DOI: 10.1017/S1355838299981931 |
0.435 |
|
| 1999 |
Salman Ashraf S, Sochacka E, Cain R, Guenther R, Malkiewicz A, Agris PF. Single atom modification (O → S) of tRNA confers ribosome binding Rna. 5: 188-194. PMID 10024171 DOI: 10.1017/S1355838299981529 |
0.489 |
|
| 1999 |
Małkiewicz AJ, Marszałek M, Miśkiewicz AB, Sochacka E, Guenther R, Agris PF. Site-specifically modified sequences of human tRNA 3 Lys and E. coli tRNA Lys anticodon arms: synthesis and binding to ribosome Collection of Czechoslovak Chemical Communications. 2: 328-330. DOI: 10.1135/Css199902328 |
0.433 |
|
| 1998 |
Guenther R, Forrest B, Newman W, Małkiewicz A, Agris PF. Modified RNAs as potential drug targets Acta Biochimica Polonica. 45: 13-18. PMID 9701491 DOI: 10.18388/Abp.1998_4281 |
0.367 |
|
| 1997 |
Ashraf SS, Guenther R, Ye W, Lee Y, Malkiewicz A, Agris PF. Ribosomal binding of modified tRNA anticodons related to thermal stability Nucleic Acids Symposium Series. 58-60. PMID 9478206 |
0.392 |
|
| 1997 |
Agris PF, Guenther R, Ingram PC, Basti MM, Stuart JW, Sochacka E, Malkiewicz A. Unconventional structure of tRNA(Lys)(SUU) anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1 Rna. 3: 420-428. PMID 9085848 |
0.406 |
|
| 1996 |
Agris PF. The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function Progress in Nucleic Acid Research and Molecular Biology. 53: 79-129. PMID 8650309 DOI: 10.1016/S0079-6603(08)60143-9 |
0.408 |
|
| 1996 |
Basti MM, Stuart JW, Lam AT, Guenther R, Agris PF. Design, biological activity and NMR-solution structure of a DNA analogue of yeast tRNAPhe anticodon domain Nature Structural Biology. 3: 38-44. PMID 8548453 DOI: 10.1038/Nsb0196-38 |
0.389 |
|
| 1996 |
Stuart JW, Basti MM, Smith # WS, Forrest # B, Guenther R, Sierzputowska-Gracz H, Nawrot # B, Malkiewicz A, Agris PF. Structure of the Trinucleotide D-acp3U-A with Coordinated Mg2+Demonstrates that Modified Nucleosides Contribute to Regional Conformations of RNA Nucleosides and Nucleotides. 15: 1009-1028. DOI: 10.1080/07328319608002031 |
0.369 |
|
| 1996 |
Agris PF, Dao V, Basti MM, Guenther R. Ribosome-independent anticodon to codon binding assessed by circular dichroism: Roles of base modifications, Mg2+ and 2′OH Biospectroscopy. 2: 205-217. DOI: 10.1002/(Sici)1520-6343(1996)2:4<205::Aid-Bspy1>3.0.Co;2-5 |
0.451 |
|
| 1996 |
Agris PF, Stuart JW, Guenther R, Basti MM. NMR and Paramagnetic Ion Substitution Locates a Modified‐Nucleoside Dependent Metal Binding Site in DNA: Molecular Dynamics, Surface Charge and H2O Ordering Magnetic Resonance in Chemistry. 34. DOI: 10.1002/(Sici)1097-458X(199612)34:133.0.Co;2-Y |
0.371 |
|
| 1995 |
Agris PF, Malkiewicz A, Guenther R, Basti M, Sengupta R, Stuart J. Importance of modified nucleosides to the structure and function of tRNAs. Nucleic Acids Symposium Series. 254-5. PMID 8643387 |
0.306 |
|
| 1995 |
Agris PF, Malkiewicz A, Kraszewski A, Everett K, Nawrot B, Sochacka E, Jankowska J, Guenther R. Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry. Biochimie. 77: 125-34. PMID 7599270 DOI: 10.1016/0300-9084(96)88115-6 |
0.465 |
|
| 1995 |
Lam AT, Guenther R, Agris PF. Modified nucleoside-dependent transition metal binding to DNA analogs of the tRNA anticodon stem/loop domain Biometals. 8: 290-296. PMID 7580049 DOI: 10.1007/Bf00141601 |
0.342 |
|
| 1995 |
Nawrot B, Smith WS, Malkiewicz A, Sierzputowska-Gracz H, Agris PF. Rna Modified Uridines VII: Chemical Synthesis and Initial Analysis of tRNA D-Loop Oligomers with Tandem Modified Uridines Nucleosides and Nucleotides. 14: 143-165. DOI: 10.1080/15257779508014659 |
0.362 |
|
| 1995 |
Agris PF, Brown SC. [12] Systems for the NMR study of modified nucleoside-dependent, metal- ion induced conformational changes in nucleic acids Methods in Enzymology. 261: 270-299. DOI: 10.1016/S0076-6879(95)61014-6 |
0.392 |
|
| 1994 |
Pelsue S, Agris PF. Immunoreactivity between a monoclonal lupus autoantibody and the arginine/aspartic acid repeats within the U1-snRNP 70K autoantigen is conformationally restricted Journal of Protein Chemistry. 13: 401-408. PMID 7527219 DOI: 10.1007/Bf01901696 |
0.313 |
|
| 1994 |
Dao V, Guenther R, Malkiewicz A, Nawrot B, Sochacka E, Kraszewski A, Jankowska J, Everett K, Agris PF. Ribosome binding of DNA analogs of tRNA requires base modifications and supports the "extended anticodon". Proceedings of the National Academy of Sciences of the United States of America. 91: 2125-9. PMID 7510886 DOI: 10.1073/Pnas.91.6.2125 |
0.492 |
|
| 1993 |
Chen Y, Sierzputowska-Gracz H, Guenther R, Everett K, Agris PF. 5-Methylcytidine is required for cooperative binding of Mg2+ and a conformational transition at the anticodon stem-loop of yeast phenylalanine tRNA. Biochemistry. 32: 10249-53. PMID 8399153 DOI: 10.1021/Bi00089A047 |
0.465 |
|
| 1993 |
Agris PF, Everett K, Guenther RH, Malkiewicz A, Nawrot B, Sochacka E. tRNA modified components: The solid phase synthesis of the heptadecamers related to the tRNA (Phe, Glu) anticodon arm Collection of Czechoslovak Chemical Communications. 58: 195-198. DOI: 10.1135/Cccc1993S195 |
0.319 |
|
| 1992 |
Agris PF, Guenther RH, Sierzputowska-Gracz H, Easter L, Smith W, Hardin CC, Santa-Coloma TA, Crabb JW, Reichert LE. Solution structure of a synthetic peptide corresponding to a receptor binding region of FSH (hFSH-beta 33-53). Journal of Protein Chemistry. 11: 495-507. PMID 1449599 DOI: 10.1007/Bf01025027 |
0.335 |
|
| 1992 |
Dao V, Guenther RH, Agris PF. The role of 5-methylcytidine in the anticodon arm of yeast tRNAPhe: Site-specific Mg2+ binding and coupled conformational transition in DNA analogs Biochemistry. 31: 11012-11019. PMID 1445839 DOI: 10.1021/Bi00160A010 |
0.371 |
|
| 1992 |
Guenther RH, Hardin CC, Sierzputowska-Gracz H, Dao V, Agris PF. A magnesium-induced conformational transition in the loop of a DNA analog of the yeast tRNA(Phe) anticodon is dependent on RNA-like modifications of the bases of the stem. Biochemistry. 31: 11004-11. PMID 1445838 DOI: 10.1021/Bi00160A009 |
0.38 |
|
| 1992 |
Agris PF, Kovacs SA, Boak AM, Chen J. Spatial localization of distinct rheumatic disease-associated epitopes and the RNA "cap" of the U1 snRNP particle. Immunological Investigations. 21: 111-22. PMID 1374734 DOI: 10.3109/08820139209066183 |
0.345 |
|
| 1992 |
Smith WS, Nawrot B, Malkiewicz A, Agris PF. RNA Modified Uridines VI: Conformations of 3-[3-(S)-Amino-3-Carboxypropyl]Uridine (acp3U) from tRNA and 1-Methyl-3-[3-(S)-Amino-3-Carboxypropyl]Pseudouridine (m1acp3Ψ) from rRNA Nucleosides and Nucleotides. 11: 1683-1694. DOI: 10.1080/07328319208017815 |
0.453 |
|
| 1992 |
Smith WS, Sierzputowska-Gracz H, Sochacka E, Malkiewicz A, Agris PF. Chemistry and structure of modified uridine dinucleosides are determined by thiolation Journal of the American Chemical Society. 114: 7989-7997. DOI: 10.1021/Ja00047A005 |
0.314 |
|
| 1992 |
Agris PF, Sierzputowska-Gracz H, Smith W, Malkiewicz A, Sochacka E, Nawrot B. Thiolation of uridine carbon-2 restricts the motional dynamics of the transfer RNA wobble position nucleoside Journal of the American Chemical Society. 114: 2652-2656. DOI: 10.1021/Ja00033A044 |
0.426 |
|
| 1991 |
Agris PF. Wobble position modified nucleosides evolved to select transfer RNA codon recognition: A modified-wobble hypothesis Biochimie. 73: 1345-1349. PMID 1799628 DOI: 10.1016/0300-9084(91)90163-U |
0.428 |
|
| 1991 |
Sierzputowska-Gracz H, Guenther RH, Agris PF, Folkman W, Golankiewicz B. Structure and conformation of the hypermodified purine nucleoside wyosine and its isomers: A comparison of coupling constants and distance geometry solutions Magnetic Resonance in Chemistry. 29: 885-892. DOI: 10.1002/Mrc.1260290905 |
0.327 |
|
| 1990 |
Gehrke CW, Desgres JA, Keith G, Gerhardt KO, Agris PF, Sierzputowska-Gracz H, Tempesta MS, Kuo KC. Chapter 5 Structural Elucidation of Nucleosides in Nucleic Acids Journal of Chromatography Library. 45: A159-A223. DOI: 10.1016/S0301-4770(08)61471-2 |
0.387 |
|
| 1987 |
Schmidt PG, Sierzputowska-Gracz H, Agris PF. Internal motions in yeast phenylalanine transfer RNA from 13C NMR relaxation rates of modified base methyl groups: A model-free approach Biochemistry. 26: 8529-8534. PMID 3327524 DOI: 10.1021/Bi00400A006 |
0.321 |
|
| 1987 |
Krzyzosiak W, Denman R, Nurse K, Hellmann W, Boublik M, Gehrke CW, Agris PF, Ofengand J. In vitro synthesis of 16S ribosomal RNA containing single base changes and assembly into a functional 30S ribosome Biochemistry. 26: 2353-2364. PMID 3304424 |
0.378 |
|
| 1987 |
Sierzputowska-Gracz H, Sochacka E, Malkiewicz A, Kuo K, Gehrke CW, Agris PF. Chemistry and structure of modified uridines in the anticodon, wobble position of transfer RNA are determined by thiolation Journal of the American Chemical Society. 109: 7171-7177. DOI: 10.1021/Ja00257A044 |
0.41 |
|
| 1986 |
Agris PF, Sierzputowska-Gracz H, Smith C. Transfer RNA contains sites of localized positive charge: Carbon NMR studies of [13C]methyl-enriched Escherichia coli and yeast tRNAphe 1 Biochemistry. 25: 5126-5131. PMID 3533144 DOI: 10.1021/Bi00366A022 |
0.376 |
|
| 1986 |
Sierzputowska-Gracz H, Gopal HD, Agris PF. Comparative structural analysis of 1-methyladenosine, 7-methylguanosine, ethenoadenosine and their protonated salts IV:1H, 13C, and 15N NMR studies at natural isotope abundance Nucleic Acids Research. 14: 7783-7801. PMID 3022235 DOI: 10.1093/Nar/14.19.7783 |
0.356 |
|
| 1983 |
Kopper RA, Schmidt PG, Agris PF. Structural dynamics of transfer ribonucleic acid: Carbon-13 nuclear magnetic resonance of [13C]methyl-enriched pure species Biochemistry. 22: 1396-1401. PMID 6188487 DOI: 10.1021/Bi00275A012 |
0.383 |
|
| 1983 |
Schmidt PG, Playl T, Agris PF. Internal dynamics of transfer ribonucleic acid determined by nuclear magnetic resonance of carbon-13-enriched ribose carbon 1 Biochemistry. 22: 1408-1415. DOI: 10.1021/Bi00275A014 |
0.313 |
|
| 1980 |
Schmidt PG, Tompson JG, Agris PF. Transfer RNA structure by carbon NMR: C2 of adenine, uracil and cytosine Nucleic Acids Research. 8: 643-656. PMID 7443538 DOI: 10.1093/Nar/8.3.643 |
0.325 |
|
| 1980 |
Lin VK, Agris PF. Alterations in tRNA isoaccepting species during erythroid differentiation of the friend leukemia cell Nucleic Acids Research. 8: 3467-3480. PMID 6904970 DOI: 10.1093/Nar/8.15.3467 |
0.338 |
|
| 1980 |
Lin VK, Farkas WR, Agris PF. Specific changes in Q-ribonucleoside containing transfer RNA species during friend leukemia cell erythroid differentiation Nucleic Acids Research. 8: 3481-3489. PMID 6777758 DOI: 10.1093/Nar/8.15.3481 |
0.339 |
|
| 1979 |
Rafalski A, Kohli J, Agris P, Söll D. The nucleotide sequence of a UGA suppressor serine tRNA from Schizosaccharomyces pombe. Nucleic Acids Research. 6: 2683-95. PMID 461200 DOI: 10.1093/Nar/6.8.2683 |
0.48 |
|
| 1979 |
Tompson JG, Agris PF. Production of specific site probes of tRNA structure by enrichment with carbon 13 at particular locations Nucleic Acids Research. 7: 765-779. PMID 388347 DOI: 10.1093/Nar/7.3.765 |
0.323 |
|
| 1976 |
Agris PF, Woolverton DK, Setzer D. Subcellular localization of S adenosyl L methionine : tRNA methyltransferases with aminoacyl tRNA synthetases in human and mouse: normal and leukemic leukocytes Proceedings of the National Academy of Sciences of the United States of America. 73: 3857-3861. PMID 11466 DOI: 10.1073/Pnas.73.11.3857 |
0.324 |
|
| 1975 |
Agris PF, Fujiwara FG, Schmidt CF, Loeppky RN. Utilization of an Escherichia coli mutant for carbon-13 enrichment of tRNA for NMR studies. Nucleic Acids Research. 2: 1503-12. PMID 1101225 DOI: 10.1093/Nar/2.9.1503 |
0.359 |
|
| 1975 |
Agris PF, Armstrong DJ, Schäfer KP, Söll D. Maturation of a hypermodified nucleoside in transfer RNA Nucleic Acids Research. 2: 691-699. PMID 49880 DOI: 10.1093/Nar/2.5.691 |
0.513 |
|
| 1975 |
Agris PF, Spremulli LL, Brown GM. Transfer ribonucleic acid methylases from HeLa cells: effects of salts on activity Cancer Biochemistry Biophysics. 1: 97-105. |
0.604 |
|
| 1974 |
Spremulli LL, Agris PF, Brown GM, Rajbhandary UL. Escherichia coli formylmethionine tRNA: methylation of specific guanine and adenine residues catalyzed by HeLa cells tRNA methylases and the effect of these methylations on its biological properties. Archives of Biochemistry and Biophysics. 162: 22-37. PMID 4598530 DOI: 10.1016/0003-9861(74)90101-5 |
0.672 |
|
| 1974 |
Seno T, Agris PF, Söll D. Involvement of the anticodon region of Escherichia coli tRNAGln and tRNAGlu in the specific interaction with cognate aminoacyl-tRNA synthetase. Alteration of the 2-thiouridine derivatives located in the anticodon of the tRNAs by BrCN or sulfur deprivation Bba Section Nucleic Acids and Protein Synthesis. 349: 328-338. PMID 4366808 DOI: 10.1016/0005-2787(74)90120-8 |
0.585 |
|
| 1974 |
Agris PF, Spremulli LL, Brown GM. tRNA methylases from HeLa cells: purification and properties of an adenine-1-methylase and a guanine-N2-methylase. Archives of Biochemistry and Biophysics. 162: 38-47. PMID 4208689 DOI: 10.1016/0003-9861(74)90102-7 |
0.632 |
|
| 1973 |
Agris PF, Koh H, Söll D. The effect of growth temperatures on the in vivo ribose methylation of Bacillus stearothermophilus transfer RNA Archives of Biochemistry and Biophysics. 154: 277-282. PMID 4689778 DOI: 10.1016/0003-9861(73)90058-1 |
0.4 |
|
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