Jung-Ying Tzeng, Ph.D. - Publications

Affiliations: 
2003 Carnegie Mellon University, Pittsburgh, PA 
Area:
Statistics, Biostatistics Biology

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yu QY, Lu TP, Hsiao TH, Lin CH, Wu CY, Tzeng JY, Hsiao CK. An Integrative Co-localization (INCO) Analysis for SNV and CNV Genomic Features With an Application to Taiwan Biobank Data. Frontiers in Genetics. 12: 709555. PMID 34567069 DOI: 10.3389/fgene.2021.709555  0.311
2020 Brucker A, Lu W, Marceau West R, Yu QY, Hsiao CK, Hsiao TH, Lin CH, Magnusson PKE, Sullivan PF, Szatkiewicz JP, Lu TP, Tzeng JY. Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis. Plos Computational Biology. 16: e1007797. PMID 32365089 DOI: 10.1371/Journal.Pcbi.1007797  0.34
2020 Martinez K, Maity A, Yolken RH, Sullivan PF, Tzeng JY. Robust kernel association testing (RobKAT). Genetic Epidemiology. PMID 31943371 DOI: 10.1002/Gepi.22280  0.305
2018 Wang C, Tzeng JY, Wu PZ, Preisig M, Hsiao CK. Re-examining Dis/Similarity-Based Tests for Rare-Variant Association with Case-Control Samples. Genetics. PMID 29545466 DOI: 10.1534/Genetics.118.300769  0.387
2018 Maity A, Zhao J, Sullivan PF, Tzeng JY. Inference on phenotype-specific effects of genes using multivariate kernel machine regression. Genetic Epidemiology. PMID 29314255 DOI: 10.1002/Gepi.22096  0.416
2016 Jeng XJ, Daye ZJ, Lu W, Tzeng JY. Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level. Plos Computational Biology. 12: e1004993. PMID 27355347 DOI: 10.1371/journal.pcbi.1004993  0.308
2015 Tzeng JY, Magnusson PK, Sullivan PF, Szatkiewicz JP. A New Method for Detecting Associations with Rare Copy-Number Variants. Plos Genetics. 11: e1005403. PMID 26431523 DOI: 10.1371/Journal.Pgen.1005403  0.425
2015 Hung H, Lin YT, Chen P, Wang CC, Huang SY, Tzeng JY. Detection of gene-gene interactions using multistage sparse and low-rank regression. Biometrics. PMID 26288029 DOI: 10.1111/Biom.12374  0.314
2015 Marceau R, Lu W, Holloway S, Sale MM, Worrall BB, Williams SR, Hsu FC, Tzeng JY. A Fast Multiple-Kernel Method With Applications to Detect Gene-Environment Interaction. Genetic Epidemiology. PMID 26139508 DOI: 10.1002/Gepi.21909  0.421
2015 Neely ML, Bondell HD, Tzeng JY. A penalized likelihood approach for investigating gene-drug interactions in pharmacogenetic studies. Biometrics. 71: 529-37. PMID 25604216 DOI: 10.1111/Biom.12259  0.373
2015 Zhao G, Marceau R, Zhang D, Tzeng JY. Assessing gene-environment interactions for common and rare variants with binary traits using gene-trait similarity regression. Genetics. 199: 695-710. PMID 25585620 DOI: 10.1534/Genetics.114.171686  0.426
2015 Wang Z, Maity A, Luo Y, Neely ML, Tzeng JY. Complete effect-profile assessment in association studies with multiple genetic and multiple environmental factors. Genetic Epidemiology. 39: 122-33. PMID 25538034 DOI: 10.1002/Gepi.21877  0.377
2014 Tzeng JY, Lu W, Hsu FC. GENE-LEVEL PHARMACOGENETIC ANALYSIS ON SURVIVAL OUTCOMES USING GENE-TRAIT SIMILARITY REGRESSION. The Annals of Applied Statistics. 8: 1232-1255. PMID 25018788 DOI: 10.1214/14-Aoas735  0.345
2014 Wang X, Epstein MP, Tzeng JY. Analysis of gene-gene interactions using gene-trait similarity regression. Human Heredity. 78: 17-26. PMID 24969398 DOI: 10.1159/000360161  0.314
2014 Hu J, Tzeng JY. Integrative gene set analysis of multi-platform data with sample heterogeneity. Bioinformatics (Oxford, England). 30: 1501-7. PMID 24489370 DOI: 10.1093/Bioinformatics/Btu060  0.346
2013 Lee SH, Ripke S, Neale BM, Faraone SV, Purcell SM, Perlis RH, Mowry BJ, Thapar A, Goddard ME, Witte JS, Absher D, Agartz I, Akil H, Amin F, ... ... Tzeng JY, et al. Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nature Genetics. 45: 984-94. PMID 23933821 DOI: 10.1038/Ng.2711  0.404
2012 Maity A, Sullivan PF, Tzeng JY. Multivariate phenotype association analysis by marker-set kernel machine regression. Genetic Epidemiology. 36: 686-95. PMID 22899176 DOI: 10.1002/Gepi.21663  0.392
2011 Pongpanich M, Neely ML, Tzeng JY. On the Aggregation of Multimarker Information for Marker-Set and Sequencing Data Analysis: Genotype Collapsing vs. Similarity Collapsing. Frontiers in Genetics. 2: 110. PMID 22303404 DOI: 10.3389/Fgene.2011.00110  0.381
2011 Tzeng JY, Zhang D, Pongpanich M, Smith C, McCarthy MI, Sale MM, Worrall BB, Hsu FC, Thomas DC, Sullivan PF. Studying gene and gene-environment effects of uncommon and common variants on continuous traits: a marker-set approach using gene-trait similarity regression. American Journal of Human Genetics. 89: 277-88. PMID 21835306 DOI: 10.1016/J.Ajhg.2011.07.007  0.352
2011 Lee MH, Tzeng JY, Huang SY, Hsiao CK. Combining an evolution-guided clustering algorithm and haplotype-based LRT in family association studies. Bmc Genetics. 12: 48. PMID 21592403 DOI: 10.1186/1471-2156-12-48  0.372
2010 Koehler ML, Bondell HD, Tzeng JY. Evaluating haplotype effects in case-control studies via penalized-likelihood approaches: prospective or retrospective analysis? Genetic Epidemiology. 34: 892-911. PMID 21104891 DOI: 10.1002/Gepi.20545  0.424
2010 Pongpanich M, Sullivan PF, Tzeng JY. A quality control algorithm for filtering SNPs in genome-wide association studies. Bioinformatics (Oxford, England). 26: 1731-7. PMID 20501555 DOI: 10.1093/Bioinformatics/Btq272  0.354
2010 Tzeng JY, Bondell HD. A comprehensive approach to haplotype-specific analysis by penalized likelihood. European Journal of Human Genetics : Ejhg. 18: 95-103. PMID 19584902 DOI: 10.1038/Ejhg.2009.118  0.439
2009 Liu Y, Li YJ, Satten GA, Allen AS, Tzeng JY. A regression-based association test for case-control studies that uses inferred ancestral haplotype similarity. Annals of Human Genetics. 73: 520-6. PMID 19622101 DOI: 10.1111/J.1469-1809.2009.00536.X  0.451
2009 Tzeng JY, Zhang D, Chang SM, Thomas DC, Davidian M. Gene-trait similarity regression for multimarker-based association analysis. Biometrics. 65: 822-32. PMID 19210740 DOI: 10.1111/J.1541-0420.2008.01176.X  0.36
2007 Tzeng JY, Zhang D. Haplotype-based association analysis via variance-components score test. American Journal of Human Genetics. 81: 927-38. PMID 17924336 DOI: 10.1086/521558  0.467
2006 Wen SH, Tzeng JY, Kao JT, Hsiao CK. A two-stage design for multiple testing in large-scale association studies. Journal of Human Genetics. 51: 523-32. PMID 16691321 DOI: 10.1007/S10038-006-0393-6  0.344
2006 Tzeng JY, Wang CH, Kao JT, Hsiao CK. Regression-based association analysis with clustered haplotypes through use of genotypes. American Journal of Human Genetics. 78: 231-42. PMID 16365833 DOI: 10.1086/500025  0.435
2006 Sabatti C, Satten GA, Allen AS, Epstein MP, Chatterjee N, Spinka C, Chen J, Carroll RJ, Tzeng JY, Roeder K, Li H, Lin DY, Zeng D. Journal of the American Statistical Association: Comment Journal of the American Statistical Association. 101: 104-118. DOI: 10.1198/016214505000000817  0.404
2005 Tzeng JY. Evolutionary-based grouping of haplotypes in association analysis. Genetic Epidemiology. 28: 220-31. PMID 15726584 DOI: 10.1002/Gepi.20063  0.398
2003 Tzeng JY, Devlin B, Wasserman L, Roeder K. On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit. American Journal of Human Genetics. 72: 891-902. PMID 12610778 DOI: 10.1086/373881  0.53
2003 Tzeng J, Byerley W, Devlin B, Roeder K, Wasserman L. Outlier Detection and False Discovery Rates for Whole-Genome DNA Matching Journal of the American Statistical Association. 98: 236-246. DOI: 10.1198/016214503388619256  0.519
2000 Hsiao CK, Tzeng J, Wang C. Comparing the performance of two indices for spatial model selection: application to two mortality data. Statistics in Medicine. 19: 1915-1930. PMID 10867680 DOI: 10.1002/1097-0258(20000730)19:14<1915::Aid-Sim503>3.0.Co;2-M  0.319
1998 Tzeng J, Hsiao CK, Chen C. Spatial Model Selection Using Bayes Factor and Ratio of Variabilities for Asthma Mortality Data Canadian Journal of Public Health-Revue Canadienne De Sante Publique. 17: 158-169. DOI: 10.6288/Cjph1998-17-02-09  0.316
Show low-probability matches.