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Jané Kondev - Publications

Affiliations: 
Brandeis University, Waltham, MA, United States 
Area:
Theoretical Physics--Condensed Matter
Website:
https://www.brandeis.edu/departments/physics/people/faculty/kond.html
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tenenbaum D, Inlow K, Friedman LJ, Cai A, Gelles J, Kondev J. RNA polymerase sliding on DNA can couple the transcription of nearby bacterial operons. Proceedings of the National Academy of Sciences of the United States of America. 120: e2301402120. PMID 37459525 DOI: 10.1073/pnas.2301402120  0.617
2023 Inlow K, Tenenbaum D, Friedman LJ, Kondev J, Gelles J. Recycling of bacterial RNA polymerase by the Swi2/Snf2 ATPase RapA. Proceedings of the National Academy of Sciences of the United States of America. 120: e2303849120. PMID 37406096 DOI: 10.1073/pnas.2303849120  0.625
2023 Inlow K, Tenenbaum D, Friedman LJ, Kondev J, Gelles J. Recycling of Bacterial RNA Polymerase by the Swi2/Snf2 ATPase RapA. Biorxiv : the Preprint Server For Biology. PMID 36993374 DOI: 10.1101/2023.03.22.533849  0.626
2023 Tenenbaum D, Inlow K, Friedman L, Cai A, Gelles J, Kondev J. RNA polymerase sliding on DNA can couple the transcription of nearby bacterial operons. Biorxiv : the Preprint Server For Biology. PMID 36798213 DOI: 10.1101/2023.02.10.528045  0.618
2020 Harden TT, Herlambang KS, Chamberlain M, Lalanne JB, Wells CD, Li GW, Landick R, Hochschild A, Kondev J, Gelles J. Alternative transcription cycle for bacterial RNA polymerase. Nature Communications. 11: 448. PMID 31974358 DOI: 10.1038/S41467-019-14208-9  0.645
2019 McInally SG, Kondev J, Dawson SC. Length-dependent disassembly maintains four different flagellar lengths in . Elife. 8. PMID 31855176 DOI: 10.7554/Elife.48694  0.33
2019 Shekhar S, Chung J, Kondev J, Gelles J, Goode BL. Synergy between Cyclase-associated protein and Cofilin accelerates actin filament depolymerization by two orders of magnitude. Nature Communications. 10: 5319. PMID 31757952 DOI: 10.1038/S41467-019-13268-1  0.569
2019 Fai TG, Mohapatra L, Kar P, Kondev J, Amir A. Length regulation of multiple flagella that self-assemble from a shared pool of components. Elife. 8. PMID 31596235 DOI: 10.7554/eLife.42599  0.326
2019 Bashor CJ, Patel N, Choubey S, Beyzavi A, Kondev J, Collins JJ, Khalil AS. Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies. Science (New York, N.Y.). PMID 31000590 DOI: 10.1126/Science.Aau8287  0.313
2018 Choubey S, Kondev J, Sanchez A. Distribution of Initiation Times Reveals Mechanisms of Transcriptional Regulation in Single Cells. Biophysical Journal. 114: 2072-2082. PMID 29742401 DOI: 10.1016/J.Bpj.2018.03.031  0.649
2017 Mohapatra L, Lagny TJ, Harbage D, Jelenkovic PR, Kondev J. The Limiting-Pool Mechanism Fails to Control the Size of Multiple Organelles. Cell Systems. 4: 559-567.e14. PMID 28544883 DOI: 10.1016/j.cels.2017.04.011  0.315
2017 Rauch J, Kondev J, Sanchez A. Cooperators trade off ecological resilience and evolutionary stability in public goods games. Journal of the Royal Society, Interface. 14. PMID 28148770 DOI: 10.1098/Rsif.2016.0967  0.518
2016 Mohapatra L, Goode BL, Jelenkovic P, Phillips R, Kondev J. Design Principles of Length Control of Cytoskeletal Structures. Annual Review of Biophysics. PMID 27145876 DOI: 10.1146/Annurev-Biophys-070915-094206  0.309
2016 Harbage DW, Kondev J. Exact Length Distribution of Filamentous Structures Assembled from a Finite Pool of Subunits. The Journal of Physical Chemistry. B. PMID 27135597 DOI: 10.1021/acs.jpcb.6b02242  0.316
2016 Harden TT, Wells CD, Friedman LJ, Landick R, Hochschild A, Kondev J, Gelles J. Bacterial RNA polymerase can retain σ70 throughout transcription. Proceedings of the National Academy of Sciences of the United States of America. PMID 26733675 DOI: 10.1073/Pnas.1513899113  0.638
2015 Choubey S, Kondev J, Sanchez A. Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules. Plos Computational Biology. 11: e1004345. PMID 26544860 DOI: 10.1371/Journal.Pcbi.1004345  0.641
2015 Mohapatra L, Goode BL, Kondev J. Antenna Mechanism of Length Control of Actin Cables. Plos Computational Biology. 11: e1004160. PMID 26107518 DOI: 10.1371/Journal.Pcbi.1004160  0.319
2015 Paramanathan T, Reeves D, Friedman LJ, Kondev J, Gelles J. Competitor Effect on Molecular Complex Dissociation in the Absence of Ternary Complex Formation Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.905  0.585
2015 Harden TT, Friedman LJ, Wells CD, Hochschild A, Kondev J, Gelles J. Bacterial Transcript Elongation Complexes can Retain Sigma Factor throughout RNA Synthesis Biophysical Journal. 108: 535a. DOI: 10.1016/J.Bpj.2014.11.2933  0.652
2014 Paramanathan T, Reeves D, Friedman LJ, Kondev J, Gelles J. A general mechanism for competitor-induced dissociation of molecular complexes. Nature Communications. 5: 5207. PMID 25342513 DOI: 10.1038/Ncomms6207  0.587
2014 Choubey S, Sanchez A, Kondev J. Deciphering Transcriptional Dynamics in Vivo by Counting Nascent RNAs Biophysical Journal. 106: 375a. DOI: 10.1016/J.Bpj.2013.11.2123  0.645
2013 Sanchez A, Choubey S, Kondev J. Stochastic models of transcription: from single molecules to single cells. Methods (San Diego, Calif.). 62: 13-25. PMID 23557991 DOI: 10.1016/J.Ymeth.2013.03.026  0.651
2013 Sanchez A, Choubey S, Kondev J. Regulation of noise in gene expression. Annual Review of Biophysics. 42: 469-91. PMID 23527780 DOI: 10.1146/Annurev-Biophys-083012-130401  0.599
2013 Mohapatra L, Eskin J, Goode BL, Kondev J. Length Regulation of Actin Filament Arrays Biophysical Journal. 104: 139a. DOI: 10.1016/J.Bpj.2012.11.794  0.349
2013 Bronk G, Avsaroglu B, Ham J, Haber J, Kondev J. Rabl Organization of Chromosomes in the Yeast Nucleus Biophysical Journal. 104: 582a. DOI: 10.1016/J.Bpj.2012.11.3235  0.321
2012 Garcia HG, Sanchez A, Boedicker JQ, Osborne M, Gelles J, Kondev J, Phillips R. Operator sequence alters gene expression independently of transcription factor occupancy in bacteria. Cell Reports. 2: 150-61. PMID 22840405 DOI: 10.1016/J.Celrep.2012.06.004  0.694
2011 Sanchez A, Osborne ML, Friedman LJ, Kondev J, Gelles J. Mechanism of transcriptional repression at a bacterial promoter by analysis of single molecules. The Embo Journal. 30: 3940-6. PMID 21829165 DOI: 10.1038/Emboj.2011.273  0.723
2011 Sanchez A, Garcia HG, Jones D, Phillips R, Kondev J. Effect of promoter architecture on the cell-to-cell variability in gene expression. Plos Computational Biology. 7: e1001100. PMID 21390269 DOI: 10.1371/Journal.Pcbi.1001100  0.621
2011 Garcia HG, Kondev J, Orme N, Theriot JA, Phillips R. Thermodynamics of biological processes. Methods in Enzymology. 492: 27-59. PMID 21333788 DOI: 10.1016/B978-0-12-381268-1.00014-8  0.326
2010 Garcia HG, Sanchez A, Kuhlman T, Kondev J, Phillips R. Transcription by the numbers redux: experiments and calculations that surprise. Trends in Cell Biology. 20: 723-33. PMID 20801657 DOI: 10.1016/J.Tcb.2010.07.002  0.641
2010 Wiggins PA, Cheveralls K, Kondev J. Strong Intra-Nucleoid Interactions Organize the E. Coli Chromosome into a Nucleoid Filament Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.3613  0.319
2009 Reeves D, Cheveralls K, Kondev J. Biochemistry on a Leash: Confinement as a Regulatory Mechanism for Bimolecular Reaction Rates Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3121  0.327
2009 Sanchez A, Hol F, Kondev J, Wiggins P. Exploiting stochastic gene expression to infer promoter regulatory mechanisms: The Moment Analysis Method Biophysical Journal. 96: 305a. DOI: 10.1016/J.Bpj.2008.12.1522  0.625
2009 Wiggins P, Martin J, Kondev J. Chromatin Organization in E.coli Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1006  0.302
2008 Sánchez A, Kondev J. Transcriptional control of noise in gene expression. Proceedings of the National Academy of Sciences of the United States of America. 105: 5081-6. PMID 18353986 DOI: 10.1073/Pnas.0707904105  0.61
2007 Garcia HG, Grayson P, Han L, Inamdar M, Kondev J, Nelson PC, Phillips R, Widom J, Wiggins PA. Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity. Biopolymers. 85: 115-30. PMID 17103419 DOI: 10.1002/Bip.20627  0.3
2005 Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R. Transcriptional regulation by the numbers: applications. Current Opinion in Genetics & Development. 15: 125-35. PMID 15797195 DOI: 10.1016/J.Gde.2005.02.006  0.737
2005 Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R. Transcriptional regulation by the numbers: models. Current Opinion in Genetics & Development. 15: 116-24. PMID 15797194 DOI: 10.1016/J.Gde.2005.02.007  0.753
2004 Majumdar SN, Das D, Kondev J, Chakraborty B. Landau-like theory of glassy dynamics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 060501. PMID 15697333 DOI: 10.1103/Physreve.70.060501  0.304
2004 Sandler N, Maei HR, Kondev J. Correlated quantum percolation in the lowest Landau level Physical Review B - Condensed Matter and Materials Physics. 70: 045309-1-045309-13. DOI: 10.1103/Physrevb.70.045309  0.734
2003 Purohit PK, Kondev J, Phillips R. Mechanics of DNA packaging in viruses. Proceedings of the National Academy of Sciences of the United States of America. 100: 3173-8. PMID 12629206 DOI: 10.1073/Pnas.0737893100  0.305
2003 Sandler N, Maei HR, Kondev J. Quantum and classical localization in the lowest Landau level Physical Review B - Condensed Matter and Materials Physics. 68: 2053151-2053154. DOI: 10.1103/Physrevb.68.205315  0.727
2003 Chakraborty B, Das D, Kondev J. Jamming in a model glass: Interplay of dynamics and thermodynamics Physica a: Statistical Mechanics and Its Applications. 318: 23-29. DOI: 10.1016/S0378-4371(02)01397-3  0.322
2002 Chakraborty B, Das D, Kondev J. Topological jamming and the glass transition in a frustrated system. The European Physical Journal. E, Soft Matter. 9: 227-32. PMID 15010912 DOI: 10.1140/Epje/I2002-10071-7  0.3
2000 Kondev J, Henley CL, Salinas DG. Nonlinear measures for characterizing rough surface morphologies Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 61: 104-25. PMID 11046246 DOI: 10.1103/Physreve.61.104  0.553
1998 Jacobsen JL, Kondev J. Field theory of compact polymers on the square lattice Nuclear Physics B. 532: 635-688. DOI: 10.1016/S0550-3213(98)00571-9  0.307
1997 Kondev J. Liouville field theory of fluctuating loops Physical Review Letters. 78: 4320-4323. DOI: 10.1103/Physrevlett.78.4320  0.303
1996 Kondev J, De Gier J, Nienhuis B. Operator spectrum and exact exponents of the fully packed loop model Journal of Physics a: Mathematical and General. 29: 6489-6504. DOI: 10.1088/0305-4470/29/20/007  0.304
1996 Kondev J, Henley CL. Kac-Moody symmetries of critical ground states Nuclear Physics B. 464: 540-575. DOI: 10.1016/0550-3213(96)00064-8  0.572
1995 Kondev J, Henley CL. Geometrical exponents of contour loops on random Gaussian surfaces. Physical Review Letters. 74: 4580-4583. PMID 10058546 DOI: 10.1103/Physrevlett.74.4580  0.557
1995 Kondev J, Henley CL. Four-coloring model on the square lattice: A critical ground state. Physical Review. B, Condensed Matter. 52: 6628-6639. PMID 9981892 DOI: 10.1103/Physrevb.52.6628  0.551
1994 Kondev J, Henley CL. Conformal charge and exact exponents in the n=2 fully packed loop model. Physical Review Letters. 73: 2786. PMID 10057193 DOI: 10.1103/Physrevlett.73.2786  0.538
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