| Year |
Citation |
Score |
| 2021 |
Zohra Smaili F, Tian S, Roy A, Alazmi M, Arold ST, Mukherjee S, Scott Hefty P, Chen W, Gao X. QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs. Genomics, Proteomics & Bioinformatics. PMID 33631427 DOI: 10.1016/j.gpb.2021.02.001 |
0.535 |
|
| 2015 |
Roy A, Srinivasan B, Skolnick J. PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity. Journal of Chemical Information and Modeling. 55: 1757-70. PMID 26225536 DOI: 10.1021/Acs.Jcim.5B00232 |
0.381 |
|
| 2015 |
Skolnick J, Gao M, Roy A, Srinivasan B, Zhou H. Implications of the small number of distinct ligand binding pockets in proteins for drug discovery, evolution and biochemical function. Bioorganic & Medicinal Chemistry Letters. 25: 1163-70. PMID 25690787 DOI: 10.1016/J.Bmcl.2015.01.059 |
0.387 |
|
| 2015 |
Yang J, Yan R, Roy A, Xu D, Poisson J, Zhang Y. The I-TASSER Suite: protein structure and function prediction. Nature Methods. 12: 7-8. PMID 25549265 DOI: 10.1038/Nmeth.3213 |
0.424 |
|
| 2015 |
Roy A, Skolnick J. LIGSIFT: an open-source tool for ligand structural alignment and virtual screening. Bioinformatics (Oxford, England). 31: 539-44. PMID 25336501 DOI: 10.1093/Bioinformatics/Btu692 |
0.354 |
|
| 2014 |
Minie M, Chopra G, Sethi G, Horst J, White G, Roy A, Hatti K, Samudrala R. CANDO and the infinite drug discovery frontier. Drug Discovery Today. 19: 1353-63. PMID 24980786 DOI: 10.1016/J.Drudis.2014.06.018 |
0.357 |
|
| 2013 |
Yang J, Roy A, Zhang Y. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics (Oxford, England). 29: 2588-95. PMID 23975762 DOI: 10.1093/Bioinformatics/Btt447 |
0.376 |
|
| 2013 |
Yang J, Roy A, Zhang Y. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions. Nucleic Acids Research. 41: D1096-103. PMID 23087378 DOI: 10.1093/Nar/Gks966 |
0.413 |
|
| 2012 |
Roy A, Yang J, Zhang Y. COFACTOR: an accurate comparative algorithm for structure-based protein function annotation. Nucleic Acids Research. 40: W471-7. PMID 22570420 DOI: 10.1093/Nar/Gks372 |
0.443 |
|
| 2012 |
Roy A, Zhang Y. Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement. Structure (London, England : 1993). 20: 987-97. PMID 22560732 DOI: 10.1016/J.Str.2012.03.009 |
0.439 |
|
| 2011 |
Roy A, Xu D, Poisson J, Zhang Y. A protocol for computer-based protein structure and function prediction. Journal of Visualized Experiments : Jove. e3259. PMID 22082966 DOI: 10.3791/3259 |
0.452 |
|
| 2011 |
Xu D, Zhang J, Roy A, Zhang Y. Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement. Proteins. 79: 147-60. PMID 22069036 DOI: 10.1002/Prot.23111 |
0.395 |
|
| 2011 |
Menon R, Roy A, Mukherjee S, Belkin S, Zhang Y, Omenn GS. Functional implications of structural predictions for alternative splice proteins expressed in Her2/neu-induced breast cancers. Journal of Proteome Research. 10: 5503-11. PMID 22003824 DOI: 10.1021/Pr200772W |
0.55 |
|
| 2010 |
Roy A, Kucukural A, Zhang Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols. 5: 725-38. PMID 20360767 DOI: 10.1038/Nprot.2010.5 |
0.454 |
|
| 2010 |
SOMARELLI JA, MESA A, ROY A, ZHANG Y, HERRERA RJ. A three-dimensional model of the U1 small nuclear ribonucleoprotein particle Entomological Research. 40: 104-112. DOI: 10.1111/J.1748-5967.2010.00266.X |
0.348 |
|
| 2009 |
Li Y, Roy A, Zhang Y. HAAD: A quick algorithm for accurate prediction of hydrogen atoms in protein structures. Plos One. 4: e6701. PMID 19693270 DOI: 10.1371/Journal.Pone.0006701 |
0.311 |
|
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