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Riyan Cheng, Ph.D. - Publications

Affiliations: 
2007 Statistics Purdue University, West Lafayette, IN, United States 
Area:
Statistics, Biostatistics Biology
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Xu J, Casanave R, Chitre AS, Wang Q, Nguyen KM, Blake C, Wagle M, Cheng R, Polesskaya O, Palmer AA, Guo S. Causal Genetic Loci for a Motivated Behavior Spectrum Harbor Psychiatric Risk Genes. Biorxiv : the Preprint Server For Biology. PMID 37732200 DOI: 10.1101/2023.09.06.556529  0.314
2023 Fowler S, Wang T, Munro D, Kumar A, Chitre AS, Hollingsworth TJ, Garcia Martinez A, St Pierre CL, Bimschleger H, Gao J, Cheng R, Mohammadi P, Chen H, Palmer AA, Polesskaya O, et al. Genome-wide association study finds multiple loci associated with intraocular pressure in HS rats. Frontiers in Genetics. 13: 1029058. PMID 36793389 DOI: 10.3389/fgene.2022.1029058  0.345
2023 Chitre AS, Hebda-Bauer EK, Blandino P, Bimschleger H, Nguyen KM, Maras P, Li F, Ozel AB, Pan Y, Polesskaya O, Cheng R, Flagel SB, Watson SJ, Li J, Akil H, et al. Genome-wide association study in a rat model of temperament identifies multiple loci for exploratory locomotion and anxiety-like traits. Frontiers in Genetics. 13: 1003074. PMID 36712851 DOI: 10.3389/fgene.2022.1003074  0.424
2022 Gunturkun MH, Wang T, Chitre AS, Garcia Martinez A, Holl K, St Pierre C, Bimschleger H, Gao J, Cheng R, Polesskaya O, Solberg Woods LC, Palmer AA, Chen H. Genome-Wide Association Study on Three Behaviors Tested in an Open Field in Heterogeneous Stock Rats Identifies Multiple Loci Implicated in Psychiatric Disorders. Frontiers in Psychiatry. 13: 790566. PMID 35237186 DOI: 10.3389/fpsyt.2022.790566  0.39
2020 Chitre AS, Polesskaya O, Holl K, Gao J, Cheng R, Bimschleger H, Garcia Martinez A, George T, Gileta AF, Han W, Horvath A, Hughson A, Ishiwari K, King CP, Lamparelli A, et al. Genome-Wide Association Study in 3,173 Outbred Rats Identifies Multiple Loci for Body Weight, Adiposity, and Fasting Glucose. Obesity (Silver Spring, Md.). PMID 32860487 DOI: 10.1002/Oby.22927  0.372
2020 Zhou X, St Pierre CL, Gonzales NM, Zou J, Cheng R, Chitre AS, Sokoloff G, Palmer AA. Genome-Wide Association Study in Two Cohorts from a Multi-generational Mouse Advanced Intercross Line Highlights the Difficulty of Replication. G3 (Bethesda, Md.). PMID 31974095 DOI: 10.1534/G3.119.400763  0.445
2020 Hernandez Cordero AI, Gonzales NM, Parker CC, Sokoloff G, Vandenbergh DJ, Cheng R, Abney M, Skol A, Douglas A, Palmer AA, Gregory JS, Lionikas A. Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2. American Journal of Human Genetics. 106: 138. PMID 31901248 DOI: 10.1016/j.ajhg.2019.12.008  0.317
2019 Hernandez Cordero AI, Gonzales NM, Parker CC, Sokolof G, Vandenbergh DJ, Cheng R, Abney M, Sko A, Douglas A, Palmer AA, Gregory JS, Lionikas A. Genome-Wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2. American Journal of Human Genetics. PMID 31761296 DOI: 10.1016/J.Ajhg.2019.10.014  0.383
2019 Rungrat T, Almonte AA, Cheng R, Gollan PJ, Stuart T, Aro EM, Borevitz JO, Pogson B, Wilson PB. A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in . Plant Direct. 3: e00138. PMID 31276082 DOI: 10.1002/pld3.138  0.355
2018 Wilson PB, Streich JC, Murray KD, Eichten SR, Cheng R, Aitken NC, Spokas K, Warthmann N, Gordon SP, Contributors A, Vogel JP, Borevitz JO. Global Diversity of the Brachypodium Species Complex as a Resource for Genome Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate. Genetics. PMID 30446522 DOI: 10.1534/Genetics.118.301589  0.434
2017 Carroll A, Cheng R, Collie-Duguid E, Meharg C, Scholz ME, Fiering SN, Fields JL, Palmer AA, Lionikas A. Fine mapping of genes determining extrafusal fiber properties in murine soleus muscle. Physiological Genomics. physiolgenomics.0009. PMID 28087756 DOI: 10.1152/Physiolgenomics.00092.2016  0.338
2017 Cheng R, Doerge RW, Borevitz J. Novel Resampling Improves Statistical Power for Multiple-Trait QTL Mapping. G3 (Bethesda, Md.). PMID 28064191 DOI: 10.1534/G3.116.037531  0.624
2016 Rungrat T, Awlia M, Brown T, Cheng R, Sirault X, Fajkus J, Trtilek M, Furbank B, Badger M, Tester M, Pogson BJ, Borevitz JO, Wilson P. Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery. The Arabidopsis Book. 14: e0185. PMID 27695390 DOI: 10.1199/Tab.0185  0.36
2015 Yazdani N, Parker CC, Shen Y, Reed ER, Guido MA, Kole LA, Kirkpatrick SL, Lim JE, Sokoloff G, Cheng R, Johnson WE, Palmer AA, Bryant CD. Hnrnph1 Is A Quantitative Trait Gene for Methamphetamine Sensitivity. Plos Genetics. 11: e1005713. PMID 26658939 DOI: 10.1371/Journal.Pgen.1005713  0.459
2014 Gatti DM, Svenson KL, Shabalin A, Wu LY, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman KW, Churchill GA. Quantitative trait locus mapping methods for diversity outbred mice. G3 (Bethesda, Md.). 4: 1623-33. PMID 25237114 DOI: 10.1534/G3.114.013748  0.538
2014 Carbonetto P, Cheng R, Gyekis JP, Parker CC, Blizard DA, Palmer AA, Lionikas A. Discovery and refinement of muscle weight QTLs in B6 × D2 advanced intercross mice. Physiological Genomics. 46: 571-82. PMID 24963006 DOI: 10.1152/Physiolgenomics.00055.2014  0.487
2014 Brown TB, Cheng R, Sirault XR, Rungrat T, Murray KD, Trtilek M, Furbank RT, Badger M, Pogson BJ, Borevitz JO. TraitCapture: genomic and environment modelling of plant phenomic data. Current Opinion in Plant Biology. 18: 73-9. PMID 24646691 DOI: 10.1016/J.Pbi.2014.02.002  0.406
2014 Li Y, Cheng R, Spokas KA, Palmer AA, Borevitz JO. Genetic variation for life history sensitivity to seasonal warming in Arabidopsis thaliana. Genetics. 196: 569-77. PMID 24281156 DOI: 10.1534/Genetics.113.157628  0.433
2014 Bryant CD, Guido MA, Kole LA, Cheng R. The heritability of oxycodone reward and concomitant phenotypes in a LG/J × SM/J mouse advanced intercross line. Addiction Biology. 19: 552-61. PMID 23231598 DOI: 10.1111/Adb.12016  0.418
2013 Cheng R, Parker CC, Abney M, Palmer AA. Practical considerations regarding the use of genotype and pedigree data to model relatedness in the context of genome-wide association studies. G3 (Bethesda, Md.). 3: 1861-7. PMID 23979941 DOI: 10.1534/G3.113.007948  0.437
2013 Cheng R, Borevitz J, Doerge RW. Selecting informative traits for multivariate quantitative trait locus mapping helps to gain optimal power. Genetics. 195: 683-91. PMID 23979571 DOI: 10.1534/Genetics.113.155937  0.643
2013 Cheng R, Palmer AA. A simulation study of permutation, bootstrap, and gene dropping for assessing statistical significance in the case of unequal relatedness. Genetics. 193: 1015-8. PMID 23267053 DOI: 10.1534/Genetics.112.146332  0.321
2012 Bryant CD, Kole LA, Guido MA, Cheng R, Palmer AA. Methamphetamine-induced conditioned place preference in LG/J and SM/J mouse strains and an F45/F46 advanced intercross line. Frontiers in Genetics. 3: 126. PMID 22798962 DOI: 10.3389/Fgene.2012.00126  0.367
2012 Svenson KL, Gatti DM, Valdar W, Welsh CE, Cheng R, Chesler EJ, Palmer AA, McMillan L, Churchill GA. High-resolution genetic mapping using the Mouse Diversity outbred population. Genetics. 190: 437-47. PMID 22345611 DOI: 10.1534/Genetics.111.132597  0.506
2012 Bartnikas TB, Parker CC, Cheng R, Campagna DR, Lim JE, Palmer AA, Fleming MD. QTLs for murine red blood cell parameters in LG/J and SM/J F(2) and advanced intercross lines. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 356-66. PMID 22322356 DOI: 10.1007/S00335-012-9393-3  0.455
2012 Parker CC, Sokoloff G, Cheng R, Palmer AA. Genome-wide association for fear conditioning in an advanced intercross mouse line. Behavior Genetics. 42: 437-48. PMID 22237917 DOI: 10.1007/S10519-011-9524-8  0.458
2012 Parker CC, Cheng R, Sokoloff G, Palmer AA. Genome-wide association for methamphetamine sensitivity in an advanced intercross mouse line. Genes, Brain, and Behavior. 11: 52-61. PMID 22032291 DOI: 10.1111/J.1601-183X.2011.00747.X  0.502
2011 Cheng R, Abney M, Palmer AA, Skol AD. QTLRel: an R package for genome-wide association studies in which relatedness is a concern. Bmc Genetics. 12: 66. PMID 21794153 DOI: 10.1186/1471-2156-12-66  0.508
2011 Parker CC, Cheng R, Sokoloff G, Lim JE, Skol AD, Abney M, Palmer AA. Fine-mapping alleles for body weight in LG/J × SM/J Fâ‚‚ and F(34) advanced intercross lines. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 22: 563-71. PMID 21761260 DOI: 10.1007/S00335-011-9349-Z  0.435
2011 Kärst S, Cheng R, Schmitt AO, Yang H, de Villena FP, Palmer AA, Brockmann GA. Genetic determinants for intramuscular fat content and water-holding capacity in mice selected for high muscle mass. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 22: 530-43. PMID 21732194 DOI: 10.1007/S00335-011-9342-6  0.408
2010 Lionikas A, Cheng R, Lim JE, Palmer AA, Blizard DA. Fine-mapping of muscle weight QTL in LG/J and SM/J intercrosses. Physiological Genomics. 42: 33-8. PMID 20627939 DOI: 10.1152/Physiolgenomics.00100.2010  0.465
2010 Samocha KE, Lim JE, Cheng R, Sokoloff G, Palmer AA. Fine mapping of QTL for prepulse inhibition in LG/J and SM/J mice using F(2) and advanced intercross lines. Genes, Brain, and Behavior. 9: 759-67. PMID 20597988 DOI: 10.1111/J.1601-183X.2010.00613.X  0.459
2010 Cheng R, Lim JE, Samocha KE, Sokoloff G, Abney M, Skol AD, Palmer AA. Genome-wide association studies and the problem of relatedness among advanced intercross lines and other highly recombinant populations. Genetics. 185: 1033-44. PMID 20439773 DOI: 10.1534/Genetics.110.116863  0.492
2008 Bogdan M, Frommlet F, Biecek P, Cheng R, Ghosh JK, Doerge RW. Extending the modified bayesian information criterion (mBIC) to dense markers and multiple interval mapping. Biometrics. 64: 1162-9. PMID 18266892 DOI: 10.1111/J.1541-0420.2008.00989.X  0.621
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