| Year |
Citation |
Score |
| 2023 |
Nabeel-Shah S, Greenblatt JF. Revised iCLIP-seq Protocol for Profiling RNA-protein Interaction Sites at Individual Nucleotide Resolution in Living Cells. Bio-Protocol. 13: e4688. PMID 37323634 DOI: 10.21769/BioProtoc.4688 |
0.311 |
|
| 2023 |
Nabeel-Shah S, Garg J, Ashraf K, Jeyapala R, Lee H, Petrova A, Burns JD, Pu S, Zhang Z, Greenblatt JF, Pearlman RE, Lambert JP, Fillingham J. Multilevel interrogation of H3.3 reveals a primordial role in transcription regulation. Epigenetics & Chromatin. 16: 10. PMID 37024975 DOI: 10.1186/s13072-023-00484-9 |
0.767 |
|
| 2023 |
Ray D, Laverty KU, Jolma A, Nie K, Samson R, Pour SE, Tam CL, von Krosigk N, Nabeel-Shah S, Albu M, Zheng H, Perron G, Lee H, Najafabadi H, Blencowe B, ... Greenblatt J, et al. RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific. Scientific Reports. 13: 5238. PMID 37002329 DOI: 10.1038/s41598-023-32245-9 |
0.309 |
|
| 2023 |
Segal D, Maier S, Mastromarco GJ, Qian WW, Nabeel-Shah S, Lee H, Moore G, Lacoste J, Larsen B, Lin ZY, Selvabaskaran A, Liu K, Smibert C, Zhang Z, Greenblatt J, et al. A central chaperone-like role for 14-3-3 proteins in human cells. Molecular Cell. 83: 974-993.e15. PMID 36931259 DOI: 10.1016/j.molcel.2023.02.018 |
0.336 |
|
| 2022 |
Song J, Nabeel-Shah S, Pu S, Lee H, Braunschweig U, Ni Z, Ahmed N, Marcon E, Zhong G, Ray D, Ha KCH, Guo X, Zhang Z, Hughes TR, Blencowe BJ, ... Greenblatt JF, et al. Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1. Molecular Cell. PMID 35914531 DOI: 10.1016/j.molcel.2022.06.031 |
0.304 |
|
| 2021 |
Dilworth D, Hanley RP, Ferreira de Freitas R, Allali-Hassani A, Zhou M, Mehta N, Marunde MR, Ackloo S, Carvalho Machado RA, Khalili Yazdi A, Owens DDG, Vu V, Nie DY, Alqazzaz M, Marcon E, ... ... Greenblatt JF, et al. A chemical probe targeting the PWWP domain alters NSD2 nucleolar localization. Nature Chemical Biology. PMID 34782742 DOI: 10.1038/s41589-021-00898-0 |
0.689 |
|
| 2021 |
Nabeel-Shah S, Garg J, Saettone A, Ashraf K, Lee H, Wahab S, Ahmed N, Fine J, Derynck J, Pu S, Ponce M, Marcon E, Zhang Z, Greenblatt JF, Pearlman RE, et al. Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila. Nucleic Acids Research. PMID 34086947 DOI: 10.1093/nar/gkab413 |
0.809 |
|
| 2020 |
Abraham KJ, Khosraviani N, Chan JNY, Gorthi A, Samman A, Zhao DY, Wang M, Bokros M, Vidya E, Ostrowski LA, Oshidari R, Pietrobon V, Patel PS, Algouneh A, Singhania R, ... ... Greenblatt JF, et al. Nucleolar RNA polymerase II drives ribosome biogenesis. Nature. PMID 32669707 DOI: 10.1038/S41586-020-2497-0 |
0.329 |
|
| 2020 |
Lee KY, Chopra A, Burke GL, Chen Z, Greenblatt JF, Biggar KK, Meneghini MD. A crucial RNA-binding lysine residue in the Nab3 RRM domain undergoes SET1 and SET3-responsive methylation. Nucleic Acids Research. PMID 31960028 DOI: 10.1093/nar/gkaa029 |
0.352 |
|
| 2019 |
Salamun SG, Sitz J, De La Cruz-Herrera CF, Yockteng-Melgar J, Marcon E, Greenblatt J, Fradet-Turcotte A, Frappier L. The Epstein-Barr Virus BMRF1 Protein Activates Transcription and Inhibits the DNA Damage Response by Binding NuRD. Journal of Virology. PMID 31462557 DOI: 10.1128/Jvi.01070-19 |
0.46 |
|
| 2019 |
Siddiqi UZ, Vaidya AS, Li X, Marcon E, Tsao SW, Greenblatt J, Frappier L. Identification of ARKL1 as a Negative Regulator of Epstein-Barr Virus Reactivation. Journal of Virology. PMID 31341047 DOI: 10.1128/Jvi.00989-19 |
0.429 |
|
| 2019 |
Garg J, Saettone A, Nabeel-Shah S, Cadorin M, Ponce M, Marquez S, Pu S, Greenblatt J, Lambert JP, Pearlman RE, Fillingham J. The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation. Current Biology : Cb. PMID 31280994 DOI: 10.1016/J.Cub.2019.06.052 |
0.822 |
|
| 2019 |
Ali I, Ruiz DG, Ni Z, Johnson JR, Zhang H, Li PC, Khalid MM, Conrad RJ, Guo X, Min J, Greenblatt J, Jacobson M, Krogan NJ, Ott M. Crosstalk between RNA Pol II C-Terminal Domain Acetylation and Phosphorylation via RPRD Proteins. Molecular Cell. PMID 31054975 DOI: 10.1016/J.Molcel.2019.04.008 |
0.646 |
|
| 2019 |
Georges A, Coyaud E, Marcon E, Greenblatt J, Raught B, Frappier L. USP7 Regulates Cytokinesis through FBXO38 and KIF20B. Scientific Reports. 9: 2724. PMID 30804394 DOI: 10.1038/S41598-019-39368-Y |
0.444 |
|
| 2018 |
Ivanochko D, Halabelian L, Henderson E, Savitsky P, Jain H, Marcon E, Duan S, Hutchinson A, Seitova A, Barsyte-Lovejoy D, Filippakopoulos P, Greenblatt J, Lima-Fernandes E, Arrowsmith CH. Direct interaction between the PRDM3 and PRDM16 tumor suppressors and the NuRD chromatin remodeling complex. Nucleic Acids Research. PMID 30462309 DOI: 10.1093/Nar/Gky1192 |
0.479 |
|
| 2018 |
Cheng AZ, Yockteng-Melgar J, Jarvis MC, Malik-Soni N, Borozan I, Carpenter MA, McCann JL, Ebrahimi D, Shaban NM, Marcon E, Greenblatt J, Brown WL, Frappier L, Harris RS. Epstein-Barr virus BORF2 inhibits cellular APOBEC3B to preserve viral genome integrity. Nature Microbiology. PMID 30420783 DOI: 10.1038/S41564-018-0284-6 |
0.332 |
|
| 2018 |
Georges A, Marcon E, Greenblatt J, Frappier L. Identification and Characterization of USP7 Targets in Cancer Cells. Scientific Reports. 8: 15833. PMID 30367141 DOI: 10.1038/S41598-018-34197-X |
0.357 |
|
| 2018 |
Ho TH, Sitz J, Shen Q, Leblanc-Lacroix A, Campos EI, Borozan I, Marcon E, Greenblatt J, Fradet-Turcotte A, Jin DY, Frappier L. A Screen for Epstein-Barr Virus Proteins that Inhibit the DNA Damage Response Reveals a Novel Histone Binding Protein. Journal of Virology. PMID 29743367 DOI: 10.1128/Jvi.00262-18 |
0.358 |
|
| 2017 |
Han H, Braunschweig U, Gonatopoulos-Pournatzis T, Weatheritt RJ, Hirsch CL, Ha KC, Radovani E, Nabeel-Shah S, Sterne-Weiler T, Wang J, O'Hanlon D, Pan Q, Ray D, Zheng H, Vizeacoumar F, ... ... Greenblatt JF, et al. Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors. Molecular Cell. 65: 539-553.e7. PMID 28157508 DOI: 10.1016/J.Molcel.2017.01.011 |
0.31 |
|
| 2016 |
Phanse S, Wan C, Borgeson B, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, ... ... Greenblatt J, et al. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Data in Brief. 6: 715-21. PMID 26870755 DOI: 10.1016/J.Dib.2015.11.062 |
0.324 |
|
| 2015 |
Yanling Zhao D, Gish G, Braunschweig U, Li Y, Ni Z, Schmitges FW, Zhong G, Liu K, Li W, Moffat J, Vedadi M, Min J, Pawson TJ, Blencowe BJ, Greenblatt JF. SMN and symmetric arginine dimethylation of RNA polymerase II C-terminal domain control termination. Nature. PMID 26700805 DOI: 10.1038/Nature16469 |
0.364 |
|
| 2015 |
Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, ... ... Greenblatt J, et al. Panorama of ancient metazoan macromolecular complexes. Nature. 525: 339-44. PMID 26344197 DOI: 10.1038/Nature14877 |
0.351 |
|
| 2015 |
Pu S, Vlasblom J, Turinsky A, Marcon E, Phanse S, Trimble SS, Olsen J, Greenblatt J, Emili A, Wodak SJ. Extracting high confidence protein interactions from affinity purification data: at the crossroads. Journal of Proteomics. 118: 63-80. PMID 25782749 DOI: 10.1016/J.Jprot.2015.03.009 |
0.318 |
|
| 2015 |
Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nature Biotechnology. 33: 555-62. PMID 25690854 DOI: 10.1038/Nbt.3128 |
0.352 |
|
| 2014 |
Ni Z, Xu C, Guo X, Hunter GO, Kuznetsova OV, Tempel W, Marcon E, Zhong G, Guo H, Kuo WH, Li J, Young P, Olsen JB, Wan C, Loppnau P, ... ... Greenblatt JF, et al. RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nature Structural & Molecular Biology. 21: 686-95. PMID 24997600 DOI: 10.1038/Nsmb.2853 |
0.349 |
|
| 2014 |
Marcon E, Ni Z, Pu S, Turinsky AL, Trimble SS, Olsen JB, Silverman-Gavrila R, Silverman-Gavrila L, Phanse S, Guo H, Zhong G, Guo X, Young P, Bailey S, Roudeva D, ... ... Greenblatt J, et al. Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation. Cell Reports. 8: 297-310. PMID 24981860 DOI: 10.1016/J.Celrep.2014.05.050 |
0.488 |
|
| 2014 |
Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, ... ... Greenblatt J, et al. Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli. Plos Genetics. 10: e1004120. PMID 24586182 DOI: 10.1371/Journal.Pgen.1004120 |
0.385 |
|
| 2014 |
Kim HS, Mukhopadhyay R, Rothbart SB, Silva AC, Vanoosthuyse V, Radovani E, Kislinger T, Roguev A, Ryan CJ, Xu J, Jahari H, Hardwick KG, Greenblatt JF, Krogan NJ, Fillingham JS, et al. Identification of a BET family bromodomain/casein kinase II/TAF-containing complex as a regulator of mitotic condensin function. Cell Reports. 6: 892-905. PMID 24565511 DOI: 10.1016/J.Celrep.2014.01.029 |
0.809 |
|
| 2014 |
Paladino P, Marcon E, Greenblatt J, Frappier L. Identification of herpesvirus proteins that contribute to G1/S arrest. Journal of Virology. 88: 4480-92. PMID 24501404 DOI: 10.1128/Jvi.00059-14 |
0.361 |
|
| 2014 |
Wong KS, Snider JD, Graham C, Greenblatt JF, Emili A, Babu M, Houry WA. The MoxR ATPase RavA and its cofactor ViaA interact with the NADH:ubiquinone oxidoreductase I in Escherichia coli. Plos One. 9: e85529. PMID 24454883 DOI: 10.1371/journal.pone.0085529 |
0.306 |
|
| 2014 |
de Boer CG, van Bakel H, Tsui K, Li J, Morris QD, Nislow C, Greenblatt JF, Hughes TR. A unified model for yeast transcript definition. Genome Research. 24: 154-66. PMID 24170600 DOI: 10.1101/Gr.164327.113 |
0.304 |
|
| 2013 |
Radovani E, Cadorin M, Shams T, El-Rass S, Karsou AR, Kim HS, Kurat CF, Keogh MC, Greenblatt JF, Fillingham JS. The carboxyl terminus of Rtt109 functions in chaperone control of histone acetylation. Eukaryotic Cell. 12: 654-64. PMID 23457193 DOI: 10.1128/Ec.00291-12 |
0.802 |
|
| 2013 |
Li Y, Zhao DY, Greenblatt JF, Zhang Z. RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments. Nucleic Acids Research. 41: e94. PMID 23455476 DOI: 10.1093/Nar/Gkt142 |
0.333 |
|
| 2012 |
Babu M, Kagan O, Guo H, Greenblatt J, Emili A. Identification of protein complexes in Escherichia coli using sequential peptide affinity purification in combination with tandem mass spectrometry. Journal of Visualized Experiments : Jove. PMID 23168686 DOI: 10.3791/4057 |
0.43 |
|
| 2012 |
Gagarinova A, Babu M, Greenblatt J, Emili A. Mapping bacterial functional networks and pathways in Escherichia Coli using synthetic genetic arrays. Journal of Visualized Experiments : Jove. PMID 23168417 DOI: 10.3791/4056 |
0.384 |
|
| 2011 |
Ni Z, Olsen JB, Guo X, Zhong G, Ruan ED, Marcon E, Young P, Guo H, Li J, Moffat J, Emili A, Greenblatt JF. Control of the RNA polymerase II phosphorylation state in promoter regions by CTD interaction domain-containing proteins RPRD1A and RPRD1B. Transcription. 2: 237-42. PMID 22231121 DOI: 10.4161/trns.2.5.17803 |
0.369 |
|
| 2011 |
Babu M, Gagarinova A, Greenblatt J, Emili A. Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli. Methods in Molecular Biology (Clifton, N.J.). 765: 125-53. PMID 21815091 DOI: 10.1007/978-1-61779-197-0_9 |
0.349 |
|
| 2011 |
Hao Y, Merkoulovitch A, Vlasblom J, Pu S, Turinsky AL, Roudeva D, Turner B, Greenblatt J, Wodak SJ. OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms. Bioinformatics (Oxford, England). 27: 883-4. PMID 21257609 DOI: 10.1093/Bioinformatics/Btr035 |
0.306 |
|
| 2011 |
Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, ... Greenblatt J, et al. A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Molecular Microbiology. 79: 484-502. PMID 21219465 DOI: 10.1111/J.1365-2958.2010.07465.X |
0.361 |
|
| 2011 |
Turinsky AL, Turner B, Borja RC, Gleeson JA, Heath M, Pu S, Switzer T, Dong D, Gong Y, On T, Xiong X, Emili A, Greenblatt J, Parkinson J, Zhang Z, et al. DAnCER: disease-annotated chromatin epigenetics resource. Nucleic Acids Research. 39: D889-94. PMID 20876685 DOI: 10.1093/Nar/Gkq857 |
0.413 |
|
| 2010 |
Lambert JP, Fillingham J, Siahbazi M, Greenblatt J, Baetz K, Figeys D. Defining the budding yeast chromatin-associated interactome. Molecular Systems Biology. 6: 448. PMID 21179020 DOI: 10.1038/Msb.2010.104 |
0.758 |
|
| 2010 |
Pu S, Turinsky AL, Vlasblom J, On T, Xiong X, Emili A, Zhang Z, Greenblatt J, Parkinson J, Wodak SJ. Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human. Plos One. 5: e14122. PMID 21124763 DOI: 10.1371/Journal.Pone.0014122 |
0.379 |
|
| 2010 |
Zheng J, Benschop JJ, Shales M, Kemmeren P, Greenblatt J, Cagney G, Holstege F, Li H, Krogan NJ. Epistatic relationships reveal the functional organization of yeast transcription factors. Molecular Systems Biology. 6: 420. PMID 20959818 DOI: 10.1038/Msb.2010.77 |
0.57 |
|
| 2010 |
Campos EI, Fillingham J, Li G, Zheng H, Voigt P, Kuo WH, Seepany H, Gao Z, Day LA, Greenblatt JF, Reinberg D. The program for processing newly synthesized histones H3.1 and H4. Nature Structural & Molecular Biology. 17: 1343-51. PMID 20953179 DOI: 10.1038/Nsmb.1911 |
0.715 |
|
| 2010 |
On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J. The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins. 78: 2075-89. PMID 20455264 DOI: 10.1002/Prot.22723 |
0.392 |
|
| 2010 |
Mak AB, Ni Z, Hewel JA, Chen GI, Zhong G, Karamboulas K, Blakely K, Smiley S, Marcon E, Roudeva D, Li J, Olsen JB, Wan C, Punna T, Isserlin R, ... ... Greenblatt J, et al. A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency. Molecular & Cellular Proteomics : McP. 9: 811-23. PMID 20305087 DOI: 10.1074/Mcp.M000002-Mcp201 |
0.524 |
|
| 2009 |
Kim HS, Vanoosthuyse V, Fillingham J, Roguev A, Watt S, Kislinger T, Treyer A, Carpenter LR, Bennett CS, Emili A, Greenblatt JF, Hardwick KG, Krogan NJ, Bähler J, Keogh MC. An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Nature Structural & Molecular Biology. 16: 1286-93. PMID 19915592 DOI: 10.1038/Nsmb.1688 |
0.785 |
|
| 2009 |
Khanna M, Van Bakel H, Tang X, Calarco JA, Babak T, Guo G, Emili A, Greenblatt JF, Hughes TR, Krogan NJ, Blencowe BJ. A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300. Rna (New York, N.Y.). 15: 2174-85. PMID 19789211 DOI: 10.1261/Rna.1790509 |
0.577 |
|
| 2009 |
Fillingham J, Kainth P, Lambert JP, van Bakel H, Tsui K, Peña-Castillo L, Nislow C, Figeys D, Hughes TR, Greenblatt J, Andrews BJ. Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Molecular Cell. 35: 340-51. PMID 19683497 DOI: 10.1016/J.Molcel.2009.06.023 |
0.753 |
|
| 2009 |
Gong Y, Kakihara Y, Krogan N, Greenblatt J, Emili A, Zhang Z, Houry WA. An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell. Molecular Systems Biology. 5: 275. PMID 19536198 DOI: 10.1038/Msb.2009.26 |
0.563 |
|
| 2009 |
Babu M, Krogan NJ, Awrey DE, Emili A, Greenblatt JF. Systematic characterization of the protein interaction network and protein complexes in Saccharomyces cerevisiae using tandem affinity purification and mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 548: 187-207. PMID 19521826 DOI: 10.1007/978-1-59745-540-4_11 |
0.53 |
|
| 2009 |
Handford JI, Ize B, Buchanan G, Butland GP, Greenblatt J, Emili A, Palmer T. Conserved network of proteins essential for bacterial viability. Journal of Bacteriology. 191: 4732-49. PMID 19376873 DOI: 10.1128/Jb.00136-09 |
0.392 |
|
| 2009 |
Zhou K, Kuo WH, Fillingham J, Greenblatt JF. Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5. Proceedings of the National Academy of Sciences of the United States of America. 106: 6956-61. PMID 19365074 DOI: 10.1073/pnas.0806302106 |
0.728 |
|
| 2009 |
Cochrane A, Murley LL, Gao M, Wong R, Clayton K, Brufatto N, Canadien V, Mamelak D, Chen T, Richards D, Zeghouf M, Greenblatt J, Burks C, Frappier L. Stable complex formation between HIV Rev and the nucleosome assembly protein, NAP1, affects Rev function. Virology. 388: 103-11. PMID 19339032 DOI: 10.1016/J.Virol.2009.03.005 |
0.41 |
|
| 2008 |
Pu S, Ronen K, Vlasblom J, Greenblatt J, Wodak SJ. Local coherence in genetic interaction patterns reveals prevalent functional versatility. Bioinformatics (Oxford, England). 24: 2376-83. PMID 18718945 DOI: 10.1093/Bioinformatics/Btn440 |
0.322 |
|
| 2008 |
Fillingham J, Greenblatt JF. A histone code for chromatin assembly. Cell. 134: 206-8. PMID 18662534 DOI: 10.1016/j.cell.2008.07.007 |
0.703 |
|
| 2008 |
Fillingham J, Recht J, Silva AC, Suter B, Emili A, Stagljar I, Krogan NJ, Allis CD, Keogh MC, Greenblatt JF. Chaperone control of the activity and specificity of the histone H3 acetyltransferase Rtt109. Molecular and Cellular Biology. 28: 4342-53. PMID 18458063 DOI: 10.1128/Mcb.00182-08 |
0.784 |
|
| 2008 |
Nedea E, Nalbant D, Xia D, Theoharis NT, Suter B, Richardson CJ, Tatchell K, Kislinger T, Greenblatt JF, Nagy PL. The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes. Molecular Cell. 29: 577-87. PMID 18342605 DOI: 10.1016/J.Molcel.2007.12.031 |
0.378 |
|
| 2008 |
McKinnell IW, Ishibashi J, Le Grand F, Punch VG, Addicks GC, Greenblatt JF, Dilworth FJ, Rudnicki MA. Pax7 activates myogenic genes by recruitment of a histone methyltransferase complex. Nature Cell Biology. 10: 77-84. PMID 18066051 DOI: 10.1038/ncb1671 |
0.315 |
|
| 2008 |
Jessulat M, Alamgir M, Salsali H, Greenblatt J, Xu J, Golshani A. Interacting proteins Rtt109 and Vps75 affect the efficiency of non-homologous end-joining in Saccharomyces cerevisiae. Archives of Biochemistry and Biophysics. 469: 157-64. PMID 18036332 DOI: 10.1016/J.Abb.2007.11.001 |
0.359 |
|
| 2008 |
Cojocaru M, Jeronimo C, Forget D, Bouchard A, Bergeron D, Côte P, Poirier GG, Greenblatt J, Coulombe B. Genomic location of the human RNA polymerase II general machinery: evidence for a role of TFIIF and Rpb7 at both early and late stages of transcription. The Biochemical Journal. 409: 139-47. PMID 17848138 DOI: 10.1042/Bj20070751 |
0.44 |
|
| 2007 |
Suter B, Fetchko MJ, Imhof R, Graham CI, Stoffel-Studer I, Zbinden C, Raghavan M, Lopez L, Beneti L, Hort J, Fillingham J, Greenblatt JF, Giaever G, Nislow C, Stagljar I. Examining protein protein interactions using endogenously tagged yeast arrays: the cross-and-capture system. Genome Research. 17: 1774-82. PMID 17989249 DOI: 10.1101/Gr.6667007 |
0.727 |
|
| 2007 |
Suter B, Pogoutse O, Guo X, Krogan N, Lewis P, Greenblatt JF, Rine J, Emili A. Association with the origin recognition complex suggests a novel role for histone acetyltransferase Hat1p/Hat2p. Bmc Biology. 5: 38. PMID 17880717 DOI: 10.1186/1741-7007-5-38 |
0.706 |
|
| 2007 |
Jeronimo C, Forget D, Bouchard A, Li Q, Chua G, Poitras C, Thérien C, Bergeron D, Bourassa S, Greenblatt J, Chabot B, Poirier GG, Hughes TR, Blanchette M, Price DH, et al. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. Molecular Cell. 27: 262-74. PMID 17643375 DOI: 10.1016/J.Molcel.2007.06.027 |
0.507 |
|
| 2007 |
Pu S, Vlasblom J, Emili A, Greenblatt J, Wodak SJ. Identifying functional modules in the physical interactome of Saccharomyces cerevisiae. Proteomics. 7: 944-60. PMID 17370254 DOI: 10.1002/Pmic.200600636 |
0.392 |
|
| 2007 |
Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, ... ... Greenblatt JF, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 446: 806-10. PMID 17314980 DOI: 10.1038/Nature05649 |
0.786 |
|
| 2007 |
Collins SR, Kemmeren P, Zhao XC, Greenblatt JF, Spencer F, Holstege FC, Weissman JS, Krogan NJ. Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Molecular & Cellular Proteomics : McP. 6: 439-50. PMID 17200106 DOI: 10.1074/Mcp.M600381-Mcp200 |
0.497 |
|
| 2007 |
Xiao T, Shibata Y, Rao B, Laribee RN, O'Rourke R, Buck MJ, Greenblatt JF, Krogan NJ, Lieb JD, Strahl BD. The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes. Molecular and Cellular Biology. 27: 721-31. PMID 17088384 DOI: 10.1128/Mcb.01628-06 |
0.561 |
|
| 2007 |
Butland G, Krogan NJ, Xu J, Yang WH, Aoki H, Li JS, Krogan N, Menendez J, Cagney G, Kiani GC, Jessulat MG, Datta N, Ivanov I, Abouhaidar MG, Emili A, ... Greenblatt J, et al. Investigating the in vivo activity of the DeaD protein using protein-protein interactions and the translational activity of structured chloramphenicol acetyltransferase mRNAs. Journal of Cellular Biochemistry. 100: 642-52. PMID 16983699 DOI: 10.1002/Jcb.21016 |
0.6 |
|
| 2006 |
Pitre S, Dehne F, Chan A, Cheetham J, Duong A, Emili A, Gebbia M, Greenblatt J, Jessulat M, Krogan N, Luo X, Golshani A. PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. Bmc Bioinformatics. 7: 365. PMID 16872538 DOI: 10.1186/1471-2105-7-365 |
0.574 |
|
| 2006 |
Maciag K, Altschuler SJ, Slack MD, Krogan NJ, Emili A, Greenblatt JF, Maniatis T, Wu LF. Systems-level analyses identify extensive coupling among gene expression machines. Molecular Systems Biology. 2: 2006.0003. PMID 16738550 DOI: 10.1038/Msb4100045 |
0.498 |
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| 2006 |
Downey M, Houlsworth R, Maringele L, Rollie A, Brehme M, Galicia S, Guillard S, Partington M, Zubko MK, Krogan NJ, Emili A, Greenblatt JF, Harrington L, Lydall D, Durocher D. A genome-wide screen identifies the evolutionarily conserved KEOPS complex as a telomere regulator. Cell. 124: 1155-68. PMID 16564010 DOI: 10.1016/J.Cell.2005.12.044 |
0.558 |
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| 2006 |
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, PeregrÃn-Alvarez JM, Shales M, Zhang X, Davey M, ... ... Greenblatt JF, et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 440: 637-43. PMID 16554755 DOI: 10.1038/Nature04670 |
0.516 |
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| 2006 |
Keogh MC, Mennella TA, Sawa C, Berthelet S, Krogan NJ, Wolek A, Podolny V, Carpenter LR, Greenblatt JF, Baetz K, Buratowski S. The Saccharomyces cerevisiae histone H2A variant Htz1 is acetylated by NuA4. Genes & Development. 20: 660-5. PMID 16543219 DOI: 10.1101/Gad.1388106 |
0.761 |
|
| 2006 |
Butland G, Zhang JW, Yang W, Sheung A, Wong P, Greenblatt JF, Emili A, Zamble DB. Interactions of the Escherichia coli hydrogenase biosynthetic proteins: HybG complex formation. Febs Letters. 580: 677-81. PMID 16412426 DOI: 10.1016/j.febslet.2005.12.063 |
0.308 |
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| 2006 |
Snider J, Gutsche I, Lin M, Baby S, Cox B, Butland G, Greenblatt J, Emili A, Houry WA. Formation of a distinctive complex between the inducible bacterial lysine decarboxylase and a novel AAA+ ATPase. The Journal of Biological Chemistry. 281: 1532-46. PMID 16301313 DOI: 10.1074/Jbc.M511172200 |
0.507 |
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| 2006 |
Keogh MC, Kim JA, Downey M, Fillingham J, Chowdhury D, Harrison JC, Onishi M, Datta N, Galicia S, Emili A, Lieberman J, Shen X, Buratowski S, Haber JE, Durocher D, ... Greenblatt JF, et al. A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery. Nature. 439: 497-501. PMID 16299494 DOI: 10.1038/Nature04384 |
0.812 |
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| 2006 |
Keogh M, Kim J, Downey M, Fillingham J, Chowdhury D, Harrison JC, Onishi M, Datta N, Galicia S, Emili A, Lieberman J, Shen X, Buratowski S, Haber JE, Durocher D, ... Greenblatt JF, et al. Erratum: Corrigendum: A phosphatase complex that dephosphorylates γH2AX regulates DNA damage checkpoint recovery Nature. 441: 120-120. DOI: 10.1038/Nature04772 |
0.771 |
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| 2005 |
Keogh MC, Kurdistani SK, Morris SA, Ahn SH, Podolny V, Collins SR, Schuldiner M, Chin K, Punna T, Thompson NJ, Boone C, Emili A, Weissman JS, Hughes TR, Strahl BD, ... ... Greenblatt JF, et al. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell. 123: 593-605. PMID 16286008 DOI: 10.1016/J.Cell.2005.10.025 |
0.773 |
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| 2005 |
Schuldiner M, Collins SR, Thompson NJ, Denic V, Bhamidipati A, Punna T, Ihmels J, Andrews B, Boone C, Greenblatt JF, Weissman JS, Krogan NJ. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell. 123: 507-19. PMID 16269340 DOI: 10.1016/J.Cell.2005.08.031 |
0.456 |
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| 2005 |
Prather D, Krogan NJ, Emili A, Greenblatt JF, Winston F. Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae. Molecular and Cellular Biology. 25: 10122-35. PMID 16260625 DOI: 10.1128/Mcb.25.22.10122-10135.2005 |
0.52 |
|
| 2005 |
Laribee RN, Krogan NJ, Xiao T, Shibata Y, Hughes TR, Greenblatt JF, Strahl BD. BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex. Current Biology : Cb. 15: 1487-93. PMID 16040246 DOI: 10.1016/J.Cub.2005.07.028 |
0.565 |
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| 2005 |
Hoang T, Peng WT, Vanrobays E, Krogan N, Hiley S, Beyer AL, Osheim YN, Greenblatt J, Hughes TR, Lafontaine DL. Esf2p, a U3-associated factor required for small-subunit processome assembly and compaction. Molecular and Cellular Biology. 25: 5523-34. PMID 15964808 DOI: 10.1128/Mcb.25.13.5523-5534.2005 |
0.572 |
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| 2005 |
Langelier MF, Baali D, Trinh V, Greenblatt J, Archambault J, Coulombe B. The highly conserved glutamic acid 791 of Rpb2 is involved in the binding of NTP and Mg(B) in the active center of human RNA polymerase II. Nucleic Acids Research. 33: 2629-39. PMID 15886393 DOI: 10.1093/Nar/Gki570 |
0.364 |
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| 2005 |
Zhao R, Davey M, Hsu YC, Kaplanek P, Tong A, Parsons AB, Krogan N, Cagney G, Mai D, Greenblatt J, Boone C, Emili A, Houry WA. Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone. Cell. 120: 715-27. PMID 15766533 DOI: 10.1016/J.Cell.2004.12.024 |
0.544 |
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| 2005 |
Abbott KL, Archambault J, Xiao H, Nguyen BD, Roeder RG, Greenblatt J, Omichinski JG, Legault P. Interactions of the HIV-1 Tat and RAP74 proteins with the RNA polymerase II CTD phosphatase FCP1. Biochemistry. 44: 2716-31. PMID 15723517 DOI: 10.1021/Bi047957P |
0.434 |
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| 2005 |
Emre NC, Ingvarsdottir K, Wyce A, Wood A, Krogan NJ, Henry KW, Li K, Marmorstein R, Greenblatt JF, Shilatifard A, Berger SL. Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing. Molecular Cell. 17: 585-94. PMID 15721261 DOI: 10.1016/J.Molcel.2005.01.007 |
0.527 |
|
| 2005 |
Savchenko A, Krogan N, Cort JR, Evdokimova E, Lew JM, Yee AA, Sánchez-Pulido L, Andrade MA, Bochkarev A, Watson JD, Kennedy MA, Greenblatt J, Hughes T, Arrowsmith CH, Rommens JM, et al. The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. The Journal of Biological Chemistry. 280: 19213-20. PMID 15701634 DOI: 10.1074/Jbc.M414421200 |
0.58 |
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| 2005 |
Butland G, PeregrÃn-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A. Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature. 433: 531-7. PMID 15690043 DOI: 10.1038/Nature03239 |
0.594 |
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| 2005 |
Ingvarsdottir K, Krogan NJ, Emre NC, Wyce A, Thompson NJ, Emili A, Hughes TR, Greenblatt JF, Berger SL. H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex. Molecular and Cellular Biology. 25: 1162-72. PMID 15657441 DOI: 10.1128/Mcb.25.3.1162-1172.2005 |
0.616 |
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| 2005 |
Xiao T, Kao CF, Krogan NJ, Sun ZW, Greenblatt JF, Osley MA, Strahl BD. Histone H2B ubiquitylation is associated with elongating RNA polymerase II. Molecular and Cellular Biology. 25: 637-51. PMID 15632065 DOI: 10.1128/Mcb.25.2.637-651.2005 |
0.615 |
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| 2005 |
Kong SE, Kobor MS, Krogan NJ, Somesh BP, Søgaard TM, Greenblatt JF, Svejstrup JQ. Interaction of Fcp1 phosphatase with elongating RNA polymerase II holoenzyme, enzymatic mechanism of action, and genetic interaction with elongator. The Journal of Biological Chemistry. 280: 4299-306. PMID 15563457 DOI: 10.1074/Jbc.M411071200 |
0.704 |
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| 2005 |
Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S. Erratum: The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II Nature. 433: 661-661. DOI: 10.1038/nature03307 |
0.518 |
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| 2005 |
Emre, Berger, Ingvarsdottir K, Wyce A, Henry K, Li K, Marmorstein R, Wood A, Shilatifard A, Krogan NJ, Greenblatt JF. Link between histone deubiquitination and protection of telomeres Cancer Biology and Therapy. 4: 11DUMMY. |
0.49 |
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| 2004 |
Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Drug Discovery Today. 9: S32-40. PMID 23573642 |
0.302 |
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| 2004 |
Krogan NJ, Lam MH, Fillingham J, Keogh MC, Gebbia M, Li J, Datta N, Cagney G, Buratowski S, Emili A, Greenblatt JF. Proteasome involvement in the repair of DNA double-strand breaks. Molecular Cell. 16: 1027-34. PMID 15610744 DOI: 10.1016/J.Molcel.2004.11.033 |
0.786 |
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| 2004 |
Morrison AJ, Highland J, Krogan NJ, Arbel-Eden A, Greenblatt JF, Haber JE, Shen X. INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair. Cell. 119: 767-75. PMID 15607974 DOI: 10.1016/J.Cell.2004.11.037 |
0.545 |
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| 2004 |
Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, ... ... Greenblatt J, et al. The functional landscape of mouse gene expression. Journal of Biology. 3: 21. PMID 15588312 DOI: 10.1186/Jbiol16 |
0.514 |
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| 2004 |
Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature. 432: 517-22. PMID 15565157 DOI: 10.1038/Nature03041 |
0.536 |
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| 2004 |
Krogan NJ, Baetz K, Keogh MC, Datta N, Sawa C, Kwok TC, Thompson NJ, Davey MG, Pootoolal J, Hughes TR, Emili A, Buratowski S, Hieter P, Greenblatt JF. Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. Proceedings of the National Academy of Sciences of the United States of America. 101: 13513-8. PMID 15353583 DOI: 10.1073/Pnas.0405753101 |
0.772 |
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| 2004 |
Jeronimo C, Langelier MF, Zeghouf M, Cojocaru M, Bergeron D, Baali D, Forget D, Mnaimneh S, Davierwala AP, Pootoolal J, Chandy M, Canadien V, Beattie BK, Richards DP, Workman JL, ... ... Greenblatt J, et al. RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits. Molecular and Cellular Biology. 24: 7043-58. PMID 15282305 DOI: 10.1128/Mcb.24.16.7043-7058.2004 |
0.518 |
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| 2004 |
Mnaimneh S, Davierwala AP, Haynes J, Moffat J, Peng WT, Zhang W, Yang X, Pootoolal J, Chua G, Lopez A, Trochesset M, Morse D, Krogan NJ, Hiley SL, Li Z, ... ... Greenblatt JF, et al. Exploration of essential gene functions via titratable promoter alleles. Cell. 118: 31-44. PMID 15242642 DOI: 10.1016/J.Cell.2004.06.013 |
0.486 |
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| 2004 |
Sawa C, Nedea E, Krogan N, Wada T, Handa H, Greenblatt J, Buratowski S. Bromodomain factor 1 (Bdf1) is phosphorylated by protein kinase CK2. Molecular and Cellular Biology. 24: 4734-42. PMID 15143168 DOI: 10.1128/Mcb.24.11.4734-4742.2004 |
0.592 |
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| 2004 |
Fath S, Kobor MS, Philippi A, Greenblatt J, Tschochner H. Dephosphorylation of RNA polymerase I by Fcp1p is required for efficient rRNA synthesis. The Journal of Biological Chemistry. 279: 25251-9. PMID 15073185 DOI: 10.1074/Jbc.M401867200 |
0.637 |
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| 2004 |
Peng WT, Krogan NJ, Richards DP, Greenblatt JF, Hughes TR. ESF1 is required for 18S rRNA synthesis in Saccharomyces cerevisiae. Nucleic Acids Research. 32: 1993-9. PMID 15056729 DOI: 10.1093/Nar/Gkh518 |
0.521 |
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| 2004 |
Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Young J, Berriz GF, Brost RL, Chang M, Chen Y, Cheng X, Chua G, Friesen H, Goldberg DS, ... ... Greenblatt J, et al. Global mapping of the yeast genetic interaction network. Science (New York, N.Y.). 303: 808-13. PMID 14764870 DOI: 10.1126/Science.1091317 |
0.649 |
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| 2004 |
Krogan NJ, Peng WT, Cagney G, Robinson MD, Haw R, Zhong G, Guo X, Zhang X, Canadien V, Richards DP, Beattie BK, Lalev A, Zhang W, Davierwala AP, Mnaimneh S, ... ... Greenblatt JF, et al. High-definition macromolecular composition of yeast RNA-processing complexes. Molecular Cell. 13: 225-39. PMID 14759368 DOI: 10.1016/S1097-2765(04)00003-6 |
0.549 |
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| 2004 |
Kim M, Ahn SH, Krogan NJ, Greenblatt JF, Buratowski S. Transitions in RNA polymerase II elongation complexes at the 3' ends of genes. The Embo Journal. 23: 354-64. PMID 14739930 DOI: 10.1038/Sj.Emboj.7600053 |
0.575 |
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| 2004 |
Baetz KK, Krogan NJ, Emili A, Greenblatt J, Hieter P. The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion. Molecular and Cellular Biology. 24: 1232-44. PMID 14729968 DOI: 10.1128/Mcb.24.3.1232-1244.2003 |
0.563 |
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| 2003 |
Hoheisel S, Kobor MS, Pierstorff E, Greenblatt J, Kane CM. Purification and assay of Saccharomyces cerevisiae phosphatase that acts on the C-terminal domain of the largest subunit of RNA polymerase II. Methods in Enzymology. 370: 386-95. PMID 14712662 DOI: 10.1016/S0076-6879(03)70034-2 |
0.618 |
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| 2003 |
Krogan NJ, Keogh MC, Datta N, Sawa C, Ryan OW, Ding H, Haw RA, Pootoolal J, Tong A, Canadien V, Richards DP, Wu X, Emili A, Hughes TR, Buratowski S, ... Greenblatt JF, et al. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Molecular Cell. 12: 1565-76. PMID 14690608 DOI: 10.1016/S1097-2765(03)00497-0 |
0.761 |
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| 2003 |
Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science (New York, N.Y.). 302: 449-53. PMID 14564010 DOI: 10.1126/Science.1087361 |
0.44 |
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| 2003 |
Peng WT, Robinson MD, Mnaimneh S, Krogan NJ, Cagney G, Morris Q, Davierwala AP, Grigull J, Yang X, Zhang W, Mitsakakis N, Ryan OW, Datta N, Jojic V, Pal C, ... ... Greenblatt JF, et al. A panoramic view of yeast noncoding RNA processing. Cell. 113: 919-33. PMID 12837249 DOI: 10.1016/S0092-8674(03)00466-5 |
0.534 |
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| 2003 |
Nedea E, He X, Kim M, Pootoolal J, Zhong G, Canadien V, Hughes T, Buratowski S, Moore CL, Greenblatt J. Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends. The Journal of Biological Chemistry. 278: 33000-10. PMID 12819204 DOI: 10.1074/Jbc.M304454200 |
0.496 |
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| 2003 |
Holowaty MN, Zeghouf M, Wu H, Tellam J, Athanasopoulos V, Greenblatt J, Frappier L. Protein profiling with Epstein-Barr nuclear antigen-1 reveals an interaction with the herpesvirus-associated ubiquitin-specific protease HAUSP/USP7. The Journal of Biological Chemistry. 278: 29987-94. PMID 12783858 DOI: 10.1074/Jbc.M303977200 |
0.424 |
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| 2003 |
Krogan NJ, Kim M, Tong A, Golshani A, Cagney G, Canadien V, Richards DP, Beattie BK, Emili A, Boone C, Shilatifard A, Buratowski S, Greenblatt J. Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Molecular and Cellular Biology. 23: 4207-18. PMID 12773564 DOI: 10.1128/Mcb.23.12.4207-4218.2003 |
0.609 |
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| 2003 |
Nguyen BD, Abbott KL, Potempa K, Kobor MS, Archambault J, Greenblatt J, Legault P, Omichinski JG. NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1. Proceedings of the National Academy of Sciences of the United States of America. 100: 5688-93. PMID 12732728 DOI: 10.1073/Pnas.1031524100 |
0.625 |
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| 2003 |
Krogan NJ, Dover J, Wood A, Schneider J, Heidt J, Boateng MA, Dean K, Ryan OW, Golshani A, Johnston M, Greenblatt JF, Shilatifard A. The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. Molecular Cell. 11: 721-9. PMID 12667454 DOI: 10.1016/S1097-2765(03)00091-1 |
0.589 |
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| 2003 |
Owens BM, Zhu YX, Suen TC, Wang PX, Greenblatt JF, Goss PE, Hawley RG. Specific homeodomain-DNA interactions are required for HOX11-mediated transformation. Blood. 101: 4966-74. PMID 12586625 DOI: 10.1182/blood-2002-09-2857 |
0.313 |
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| 2003 |
Nguyen BD, Chen HT, Kobor MS, Greenblatt J, Legault P, Omichinski JG. Solution structure of the carboxyl-terminal domain of RAP74 and NMR characterization of the FCP1-binding sites of RAP74 and human TFIIB. Biochemistry. 42: 1460-9. PMID 12578358 DOI: 10.1021/Bi0265473 |
0.577 |
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| 2003 |
Wood A, Krogan NJ, Dover J, Schneider J, Heidt J, Boateng MA, Dean K, Golshani A, Zhang Y, Greenblatt JF, Johnston M, Shilatifard A. Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter. Molecular Cell. 11: 267-74. PMID 12535539 DOI: 10.1016/S1097-2765(02)00802-X |
0.551 |
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| 2002 |
Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends in Genetics : Tig. 18: 529-36. PMID 12350343 DOI: 10.1016/S0168-9525(02)02763-4 |
0.417 |
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| 2002 |
Krogan NJ, Kim M, Ahn SH, Zhong G, Kobor MS, Cagney G, Emili A, Shilatifard A, Buratowski S, Greenblatt JF. RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. Molecular and Cellular Biology. 22: 6979-92. PMID 12242279 DOI: 10.1128/Mcb.22.20.6979-6992.2002 |
0.725 |
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| 2002 |
Kobor MS, Greenblatt J. Regulation of transcription elongation by phosphorylation. Biochimica Et Biophysica Acta. 1577: 261-275. PMID 12213657 DOI: 10.1016/S0167-4781(02)00457-8 |
0.637 |
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| 2002 |
Zhou Y, Mah TF, Greenblatt J, Friedman DI. Evidence that the KH RNA-binding domains influence the action of the E. coli NusA protein. Journal of Molecular Biology. 318: 1175-88. PMID 12083510 DOI: 10.1016/S0022-2836(02)00238-3 |
0.418 |
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| 2002 |
Krogan NJ, Dover J, Khorrami S, Greenblatt JF, Schneider J, Johnston M, Shilatifard A. COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression. The Journal of Biological Chemistry. 277: 10753-5. PMID 11805083 DOI: 10.1074/Jbc.C200023200 |
0.566 |
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| 2001 |
Cho EJ, Kobor MS, Kim M, Greenblatt J, Buratowski S. Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes & Development. 15: 3319-29. PMID 11751637 DOI: 10.1101/Gad.935901 |
0.625 |
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| 2001 |
Krogan NJ, Greenblatt JF. Characterization of a six-subunit holo-elongator complex required for the regulated expression of a group of genes in Saccharomyces cerevisiae. Molecular and Cellular Biology. 21: 8203-12. PMID 11689709 DOI: 10.1128/Mcb.21.23.8203-8212.2001 |
0.519 |
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| 2001 |
Miller T, Krogan NJ, Dover J, Erdjument-Bromage H, Tempst P, Johnston M, Greenblatt JF, Shilatifard A. COMPASS: a complex of proteins associated with a trithorax-related SET domain protein. Proceedings of the National Academy of Sciences of the United States of America. 98: 12902-7. PMID 11687631 DOI: 10.1073/Pnas.231473398 |
0.555 |
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| 2001 |
Zhou Y, Mah TF, Yu YT, Mogridge J, Olson ER, Greenblatt J, Friedman DI. Interactions of an Arg-rich region of transcription elongation protein NusA with NUT RNA: implications for the order of assembly of the lambda N antitermination complex in vivo. Journal of Molecular Biology. 310: 33-49. PMID 11419935 DOI: 10.1006/Jmbi.2001.4722 |
0.48 |
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| 2000 |
Mah TF, Kuznedelov K, Mushegian A, Severinov K, Greenblatt J. The α subunit of E. coli RNA polymerase activates RNA binding by NusA Genes and Development. 14: 2664-2675. PMID 11040219 DOI: 10.1101/Gad.822900 |
0.448 |
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| 2000 |
Kobor MS, Simon LD, Omichinski J, Zhong G, Archambault J, Greenblatt J. A motif shared by TFIIF and TFIIB mediates their interaction with the RNA polymerase II carboxy-terminal domain phosphatase Fcp1p in Saccharomyces cerevisiae. Molecular and Cellular Biology. 20: 7438-49. PMID 11003641 DOI: 10.1128/Mcb.20.20.7438-7449.2000 |
0.622 |
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| 2000 |
McGarvey T, Rosonina E, McCracken S, Li Q, Arnaout R, Mientjes E, Nickerson JA, Awrey D, Greenblatt J, Grosveld G, Blencowe BJ. The acute myeloid leukemia-associated protein, DEK, forms a splicing-dependent interaction with exon-product complexes. The Journal of Cell Biology. 150: 309-20. PMID 10908574 DOI: 10.1083/Jcb.150.2.309 |
0.456 |
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| 2000 |
Mah TF, Li J, Davidson AR, Greenblatt J. Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage lambda N protein and RNA. Molecular Microbiology. 34: 523-37. PMID 10564494 DOI: 10.1046/J.1365-2958.1999.01618.X |
0.457 |
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| 1999 |
Kobor MS, Archambault J, Lester W, Holstege FC, Gileadi O, Jansma DB, Jennings EG, Kouyoumdjian F, Davidson AR, Young RA, Greenblatt J. An unusual eukaryotic protein phosphatase required for transcription by RNA polymerase II and CTD dephosphorylation in S. cerevisiae. Molecular Cell. 4: 55-62. PMID 10445027 DOI: 10.1016/S1097-2765(00)80187-2 |
0.635 |
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| 1999 |
Douziech M, Forget D, Greenblatt J, Coulombe B. Topological localization of the carboxyl-terminal domain of RNA polymerase II in the initiation complex. The Journal of Biological Chemistry. 274: 19868-73. PMID 10391932 DOI: 10.1074/Jbc.274.28.19868 |
0.486 |
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| 1999 |
Greenblatt J, Mah TF, Legault P, Mogridge J, Li J, Kay LE. Structure and mechanism in transcriptional antitermination by the bacteriophage lambda N protein. Cold Spring Harbor Symposia On Quantitative Biology. 63: 327-36. PMID 10384297 DOI: 10.1101/Sqb.1998.63.327 |
0.387 |
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| 1999 |
Hirst M, Kobor MS, Kuriakose N, Greenblatt J, Sadowski I. GAL4 is regulated by the RNA polymerase II holoenzyme-associated cyclin-dependent protein kinase SRB10/CDK8. Molecular Cell. 3: 673-8. PMID 10360183 DOI: 10.1016/S1097-2765(00)80360-3 |
0.617 |
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| 1999 |
Fry CJ, Pearson A, Malinowski E, Bartley SM, Greenblatt J, Farnham PJ. Activation of the murine dihydrofolate reductase promoter by E2F1. A requirement for CBP recruitment. The Journal of Biological Chemistry. 274: 15883-91. PMID 10336493 DOI: 10.1074/Jbc.274.22.15883 |
0.426 |
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| 1999 |
Kobor MS, Archambault J, Jansma D, Lester W, Simon L, Kouyoumdjian F, Greenblatt J. Regulation of transcription by an RNA polymerase II CTD phosphatase Biochemistry and Cell Biology. 77: 398. DOI: 10.1139/O99-903Q |
0.608 |
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| 1998 |
Robert F, Douziech M, Forget D, Egly JM, Greenblatt J, Burton ZF, Coulombe B. Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF Molecular Cell. 2: 341-351. PMID 9774972 DOI: 10.1016/S1097-2765(00)80278-6 |
0.462 |
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| 1998 |
Archambault J, Pan G, Dahmus GK, Cartier M, Marshall N, Zhang S, Dahmus ME, Greenblatt J. FCP1, the RAP74-interacting subunit of a human protein phosphatase that dephosphorylates the carboxyl-terminal domain of RNA polymerase IIO Journal of Biological Chemistry. 273: 27593-27601. PMID 9765293 DOI: 10.1074/Jbc.273.42.27593 |
0.46 |
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| 1998 |
Mogridge J, Legault P, Li J, Van Oene MD, Kay LE, Greenblatt J. Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage lambda N protein. Molecular Cell. 1: 265-75. PMID 9659923 DOI: 10.1016/S1097-2765(00)80027-1 |
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|
| 1998 |
Archambault J, Jansma DB, Kawasoe JH, Arndt KT, Greenblatt J, Friesen JD. Stimulation of transcription by mutations affecting conserved regions of RNA polymerase II. Journal of Bacteriology. 180: 2590-8. PMID 9573141 DOI: 10.1128/Jb.180.10.2590-2598.1998 |
0.419 |
|
| 1998 |
Legault P, Li J, Mogridge J, Kay LE, Greenblatt J. NMR structure of the bacteriophage lambda N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif. Cell. 93: 289-99. PMID 9568720 DOI: 10.1016/S0092-8674(00)81579-2 |
0.455 |
|
| 1998 |
Mogridge J, Greenblatt J. Specific Binding of Escherichia coli Ribosomal Protein S1 to boxA Transcriptional Antiterminator RNA Journal of Bacteriology. 180: 2248-2252. PMID 9555913 DOI: 10.1128/Jb.180.8.2248-2252.1998 |
0.452 |
|
| 1998 |
Mogridge J, Mah T, Greenblatt J. Involvement of boxA nucleotides in the formation of a stable ribonucleoprotein complex containing the bacteriophage lambda N protein. Journal of Biological Chemistry. 273: 4143-4148. PMID 9461609 DOI: 10.1074/Jbc.273.7.4143 |
0.8 |
|
| 1997 |
Archambault J, Chambers RS, Kobor MS, Ho Y, Cartier M, Bolotin D, Andrews B, Kane CM, Greenblatt J. An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 94: 14300-5. PMID 9405607 DOI: 10.1073/Pnas.94.26.14300 |
0.642 |
|
| 1997 |
Pearson A, Greenblatt J. Modular organization of the E2F1 activation domain and its interaction with general transcription factors TBP and TFIIH. Oncogene. 15: 2643-2658. PMID 9400991 DOI: 10.1038/Sj.Onc.1201451 |
0.399 |
|
| 1997 |
Pan G, Aso T, Greenblatt J. Interaction of elongation factors TFIIS and elongin A with a human RNA polymerase II holoenzyme capable of promoter-specific initiation and responsive to transcriptional activators. Journal of Biological Chemistry. 272: 24563-24571. PMID 9305922 DOI: 10.1074/Jbc.272.39.24563 |
0.486 |
|
| 1997 |
Forget D, Robert F, Grondin G, Burton ZF, Greenblatt J, Coulombe B. RAP74 induces promoter contacts by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box Proceedings of the National Academy of Sciences of the United States of America. 94: 7150-7155. PMID 9207059 DOI: 10.1073/Pnas.94.14.7150 |
0.462 |
|
| 1997 |
Greenblatt J. RNA polymerase II holoenzyme and transcriptional regulation. Current Opinion in Cell Biology. 9: 310-9. PMID 9159076 DOI: 10.1016/S0955-0674(97)80002-6 |
0.459 |
|
| 1997 |
McCracken S, Fong N, Yankulov K, Ballantyne S, Pan G, Greenblatt J, Patterson SD, Wickens M, Bentley DL. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature. 385: 357-61. PMID 9002523 DOI: 10.1038/385357A0 |
0.433 |
|
| 1997 |
Greenblatt J, Ingles CJ. Interaction between acidic transcriptional activation domains of herpes simplex virus activator protein VP16 and transcriptional initiation factor IID. Methods in Enzymology. 274: 120-33. PMID 8902800 DOI: 10.1016/S0076-6879(96)74012-0 |
0.476 |
|
| 1997 |
Zwahlen C, Legault P, Vincent SJF, Greenblatt J, Konrat R, Kay LE. Methods for Measurement of Intermolecular NOEs by Multinuclear NMR Spectroscopy: Application to a Bacteriophage λ N-Peptide/boxBRNA Complex Journal of the American Chemical Society. 119: 6711-6721. DOI: 10.1021/Ja970224Q |
0.317 |
|
| 1996 |
Gupta R, Emili A, Pan G, Xiao H, Shales M, Greenblatt J, Ingles CJ. Characterization of the interaction between the acidic activation domain of VP16 and the RNA polymerase II initiation factor TFIIB. Nucleic Acids Research. 24: 2324-2330. PMID 8710503 DOI: 10.1093/Nar/24.12.2324 |
0.414 |
|
| 1996 |
Blau J, Xiao H, McCracken S, O'Hare P, Greenblatt J, Bentley D. Three functional classes of transcriptional activation domain. Molecular and Cellular Biology. 16: 2044-55. PMID 8628270 DOI: 10.1128/Mcb.16.5.2044 |
0.354 |
|
| 1996 |
Robert F, Forget D, Li J, Greenblatt J, Coulombe B. Localization of subunits of transcription factors IIE and IIF immediately upstream of the transcriptional initiation site of the adenovirus major late promoter. The Journal of Biological Chemistry. 271: 8517-20. PMID 8621472 DOI: 10.1074/Jbc.271.15.8517 |
0.498 |
|
| 1995 |
Mogridge J, Mah T, Greenblatt J. A protein-RNA interaction network facilitates the template-independent cooperative assembly on RNA polymerase of a stable antitermination complex containing the lambda N protein. Genes & Development. 9: 2831-2845. PMID 7590257 DOI: 10.1101/Gad.9.22.2831 |
0.792 |
|
| 1994 |
Heng HH, Xiao H, Shi XM, Greenblatt J, Tsui LC. Genes encoding general initiation factors for RNA polymerase II transcription are dispersed in the human genome. Human Molecular Genetics. 3: 61-4. PMID 8162052 DOI: 10.1093/Hmg/3.1.61 |
0.4 |
|
| 1994 |
Emili A, Greenblatt J, Ingles CJ. Species-specific interaction of the glutamine-rich activation domains of Sp1 with the TATA box-binding protein. Molecular and Cellular Biology. 14: 1582-1593. PMID 8114696 DOI: 10.1128/Mcb.14.3.1582 |
0.393 |
|
| 1994 |
Xiao H, Lis JT, Xiao H, Greenblatt J, Friesen JD. The upstream activator CTF/NF1 and RNA polymerase II share a common element involved in transcriptional activation. Nucleic Acids Research. 22: 1966-73. PMID 8029001 DOI: 10.1093/Nar/22.11.1966 |
0.464 |
|
| 1993 |
He Z, Brinton BT, Greenblatt J, Hassell JA, Ingles CJ. The transactivator proteins VP16 and GAL4 bind replication factor A. Cell. 73: 1223-32. PMID 8513504 DOI: 10.1016/0092-8674(93)90650-F |
0.424 |
|
| 1993 |
Kephart DD, Price MP, Burton ZF, Finkelstein A, Greenblatt J, Price DH. Cloning of a Drosophila cDNA with sequence similarity to human transcription factor RAP74. Nucleic Acids Research. 21: 1319. PMID 8464716 DOI: 10.1093/Nar/21.5.1319 |
0.313 |
|
| 1993 |
Li J, Mason SW, Greenblatt J. Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription. Genes & Development. 7: 161-172. PMID 8422985 DOI: 10.1101/Gad.7.1.161 |
0.409 |
|
| 1993 |
Greenblatt J, Nodwell JR, Mason SW. Transcriptional antitermination. Nature. 364: 401-6. PMID 8332211 DOI: 10.1038/364401a0 |
0.696 |
|
| 1993 |
Nodwell JR, Greenblatt J. Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10. Cell. 72: 261-8. PMID 7678781 DOI: 10.1016/0092-8674(93)90665-D |
0.703 |
|
| 1992 |
McCracken S, Greenblatt J. Structure of RNA Polymerase II-Associated Protein: Correction. Science (New York, N.Y.). 255: 1195. PMID 17816805 DOI: 10.1126/Science.255.5049.1195 |
0.399 |
|
| 1992 |
Greenblatt J. RNA polymerase-associated transcription factors. Trends in Biochemical Sciences. 16: 408-11. PMID 1776169 DOI: 10.1016/0968-0004(91)90165-R |
0.458 |
|
| 1992 |
Mason SW, Li J, Greenblatt J. Direct interaction between two Escherichia coli transcription antitermination factors, NusB and ribosomal protein S10. Journal of Molecular Biology. 223: 55-66. PMID 1731086 DOI: 10.1016/0022-2836(92)90715-V |
0.424 |
|
| 1992 |
Killeen MT, Greenblatt JF. The general transcription factor RAP30 binds to RNA polymerase II and prevents It From binding nonspecifically to DNA Molecular and Cellular Biology. 12: 30-37. PMID 1729606 DOI: 10.1128/MCB.12.1.30 |
0.328 |
|
| 1992 |
Killeen M, Coulombe B, Greenblatt J. Recombinant TBP, transcription factor IIB, and RAP30 are sufficient for promoter recognition by mammalian RNA polymerase II. Journal of Biological Chemistry. 267: 9463-9466. DOI: 10.1016/s0021-9258(19)50111-9 |
0.309 |
|
| 1991 |
Flores V, Lu H, Killeen M, Greenblatt J, Burton ZF, Reinberg D. The small subunit of transcription factor IIF recruits RNA polymerase II into the preinitiation complex Proceedings of the National Academy of Sciences of the United States of America. 88: 9999-10003. PMID 1946469 DOI: 10.1073/Pnas.88.22.9999 |
0.468 |
|
| 1991 |
Greenblatt J. Roles of TFIID in transcriptional initiation by RNA polymerase II Cell. 66: 1067-1070. PMID 1913802 DOI: 10.1016/0092-8674(91)90027-V |
0.403 |
|
| 1991 |
Buratowski S, Sopta M, Greenblatt J, Sharp PA. RNA polymerase II-associated proteins are required for a DNA conformation change in the transcription initiation complex. Proceedings of the National Academy of Sciences of the United States of America. 88: 7509-13. PMID 1881889 DOI: 10.1073/Pnas.88.17.7509 |
0.504 |
|
| 1991 |
Nodwell JR, Greenblatt J. The nut site of bacteriophage lambda is made of RNA and is bound by transcription antitermination factors on the surface of RNA polymerase. Genes & Development. 5: 2141-51. PMID 1834523 |
0.662 |
|
| 1991 |
Formosa T, Barry J, Alberts BM, Greenblatt J. Using protein affinity chromatography to probe structure of protein machines Methods in Enzymology. 208: 24-45. PMID 1779837 DOI: 10.1016/0076-6879(91)08005-3 |
0.31 |
|
| 1991 |
McCracken S, Greenblatt J. Related RNA polymerase-binding regions in human RAP30/74 and Escherichia coli sigma 70. Science (New York, N.Y.). 253: 900-2. PMID 1652156 DOI: 10.1126/Science.1652156 |
0.422 |
|
| 1991 |
Ingles CJ, Shales M, Cress WD, Triezenberg SJ, Greenblatt J. Reduced binding of TFIID to transcriptionally compromised mutants of VP16. Nature. 351: 588-90. PMID 1646402 DOI: 10.1038/351588A0 |
0.412 |
|
| 1990 |
Stringer KF, Ingles CJ, Greenblatt J. Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID Nature. 345: 783-786. PMID 2193231 DOI: 10.1038/345783A0 |
0.337 |
|
| 1989 |
Sopta M, Burton ZF, Greenblatt J. Structure and associated DNA-helicase activity of a general transcription initiation factor that binds to RNA polymerase II Nature. 341: 410-414. PMID 2477704 DOI: 10.1038/341410A0 |
0.429 |
|
| 1988 |
Burton ZF, Killeen M, Sopta M, Ortolan LG, Greenblatt J. RAP30/74: A general initiation factor that binds to RNA polymerase II Molecular and Cellular Biology. 8: 1602-1613. PMID 3380090 DOI: 10.1128/Mcb.8.4.1602 |
0.431 |
|
| 1987 |
Horwitz RJ, Li J, Greenblatt J. An elongation control particle containing the N gene transcriptional antitermination protein of bacteriophage lambda Cell. 51: 631-641. PMID 2445491 DOI: 10.1016/0092-8674(87)90132-2 |
0.465 |
|
| 1986 |
Burton ZF, Ortolan LG, Greenblatt J. Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoter. The Embo Journal. 5: 2923-2930. DOI: 10.1002/J.1460-2075.1986.Tb04588.X |
0.465 |
|
| 1985 |
Goda Y, Greenblatt J. Efficient modification of E. coli RNA polymerase in vitro by the N gene transcription antitermination protein of bacteriophage lambda Nucleic Acids Research. 13: 2569-2582. PMID 3158883 DOI: 10.1093/Nar/13.7.2569 |
0.417 |
|
| 1982 |
Farnham PJ, Greenblatt J, Platt T. Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli. Cell. 29: 945-51. PMID 6758952 DOI: 10.1016/0092-8674(82)90457-3 |
0.564 |
|
| 1981 |
Greenblatt J, Li J. The nusA gene protein of Escherichia coli. Its identification and a demonstration that it interacts with the gene N transcription anti-termination protein of bacteriophage lambda. Journal of Molecular Biology. 147: 11-23. PMID 6455533 DOI: 10.1016/0022-2836(81)90076-0 |
0.429 |
|
| 1981 |
Greenblatt J. Regulation of transcription termination by the N gene protein of bacteriophage lambda Cell. 24: 8-9. PMID 6453652 DOI: 10.1016/0092-8674(81)90495-5 |
0.438 |
|
| 1981 |
Greenblatt J, McLimont M, Hanly S. Termination of transcription by nusA gene protein of Escherichia coli. Nature. 292: 215-220. PMID 6265785 DOI: 10.1038/292215A0 |
0.489 |
|
| 1981 |
Greenblatt J, Li J. Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription. Cell. 24: 421-428. PMID 6263495 DOI: 10.1016/0092-8674(81)90332-9 |
0.463 |
|
| 1980 |
Greenblatt J, Li J, Adhya S, Friedman DI, Baron LS, Redfield B, Kung HF, Weissbach H. L factor that is required for beta-galactosidase synthesis is the nusA gene product involved in transcription termination. Proceedings of the National Academy of Sciences of the United States of America. 77: 1991-4. PMID 6154941 DOI: 10.1073/Pnas.77.4.1991 |
0.409 |
|
| 1973 |
Greenblatt J. Regulation of the Expression of the N Gene of Bacteriophage Lambda Proceedings of the National Academy of Sciences of the United States of America. 70: 421-424. PMID 4568728 DOI: 10.1073/Pnas.70.2.421 |
0.365 |
|
| 1972 |
Greenblatt J. Positive Control of Endolysin Synthesis In Vitro by the Gene N Protein of Phage λ Proceedings of the National Academy of Sciences of the United States of America. 69: 3606-3610. PMID 4509321 DOI: 10.1073/Pnas.69.12.3606 |
0.362 |
|
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