James I. Mullins - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Microbiology Biology
Website:
https://globalhealth.washington.edu/faculty/james-mullins

367 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Juraska M, Bai H, deCamp AC, Magaret CA, Li L, Gillespie K, Carpp LN, Giorgi EE, Ludwig J, Molitor C, Hudson A, Williamson BD, Espy N, Simpkins B, Rudnicki E, ... ... Mullins JI, et al. Prevention efficacy of the broadly neutralizing antibody VRC01 depends on HIV-1 envelope sequence features. Proceedings of the National Academy of Sciences of the United States of America. 121: e2308942121. PMID 38241441 DOI: 10.1073/pnas.2308942121  0.447
2024 Shahid A, MacLennan S, Jones BR, Sudderuddin H, Dang Z, Cobarrubias K, Duncan MC, Kinloch NN, Dapp MJ, Archin NM, Fischl MA, Ofotokun I, Adimora A, Gange S, Aouizerat B, ... ... Mullins JI, et al. The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time. Journal of Virology. e0165523. PMID 38214547 DOI: 10.1128/jvi.01655-23  0.444
2023 Reeves DB, Mayer BT, deCamp AC, Huang Y, Zhang B, Carpp LN, Magaret CA, Juraska M, Gilbert PB, Montefiori DC, Bar KJ, Cardozo-Ojeda EF, Schiffer JT, Rossenkhan R, Edlefsen P, ... ... Mullins JI, et al. High monoclonal neutralization titers reduced breakthrough HIV-1 viral loads in the Antibody Mediated Prevention trials. Nature Communications. 14: 8299. PMID 38097552 DOI: 10.1038/s41467-023-43384-y  0.339
2023 Jacobson JM, Felber BK, Chen H, Pavlakis GN, Mullins JI, de Rosa SC, Kuritzkes DR, Tomaras GD, Kinslow J, Bao Y, Olefsky M, Rosati M, Bear J, Hannaman D, Laird GM, et al. The immunogenicity of an HIV-1 gag conserved element DNA vaccine in people with HIV and receiving antiretroviral therapy. Aids (London, England). PMID 38051788 DOI: 10.1097/QAD.0000000000003804  0.392
2023 McLaren PJ, Porreca I, Iaconis G, Mok HP, Mukhopadhyay S, Karakoc E, Cristinelli S, Pomilla C, Bartha I, Thorball CW, Tough RH, Angelino P, Kiar CS, Carstensen T, Fatumo S, ... ... Mullins JI, et al. Author Correction: Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature. PMID 37670157 DOI: 10.1038/s41586-023-06591-7  0.354
2023 Shahid A, MacLennan S, Jones BR, Sudderuddin H, Dang Z, Cobarrubias K, Duncan MC, Kinloch NN, Dapp MJ, Archin NM, Fischl MA, Ofotokun I, Adimora A, Gange S, Aouizerat B, ... ... Mullins JI, et al. The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time. Research Square. PMID 37645749 DOI: 10.21203/rs.3.rs-3259040/v1  0.486
2023 McLaren PJ, Porreca I, Iaconis G, Mok HP, Mukhopadhyay S, Karakoc E, Cristinelli S, Pomilla C, Bartha I, Thorball CW, Tough RH, Angelino P, Kiar CS, Carstensen T, Fatumo S, ... ... Mullins JI, et al. Africa-specific human genetic variation near CHD1L associates with HIV-1 load. Nature. PMID 37532928 DOI: 10.1038/s41586-023-06370-4  0.469
2023 Mkhize NN, Yssel A, Kaldine H, van Dorsten RT, Woodward Davis AS, Beaume N, Matten D, Lambson B, Modise T, Kgagudi P, York T, Westfall DH, Giorgi EE, Korber B, Anthony C, ... ... Mullins JI, et al. Neutralization profiles of HIV-1 viruses from the VRC01 Antibody Mediated Prevention (AMP) trials. Plos Pathogens. 19: e1011469. PMID 37384759 DOI: 10.1371/journal.ppat.1011469  0.381
2023 Seaton KE, Huang Y, Karuna S, Heptinstall JR, Brackett C, Chiong K, Zhang L, Yates NL, Sampson M, Rudnicki E, Juraska M, deCamp AC, Edlefsen PT, Mullins JI, Williamson C, et al. Pharmacokinetic serum concentrations of VRC01 correlate with prevention of HIV-1 acquisition. Ebiomedicine. 93: 104590. PMID 37300931 DOI: 10.1016/j.ebiom.2023.104590  0.376
2023 Dross S, Venkataraman R, Patel S, Huang ML, Bollard CM, Rosati M, Pavlakis GN, Felber BK, Bar KJ, Shaw GM, Jerome KR, Mullins JI, Kiem HP, Fuller DH, Peterson CW. Efficient expansion of conserved element vaccine-specific CD8+ T-cells from SHIV-infected, ART-suppressed nonhuman primates. Frontiers in Immunology. 14: 1188018. PMID 37207227 DOI: 10.3389/fimmu.2023.1188018  0.453
2022 Gilbert PB, Huang Y, deCamp AC, Karuna S, Zhang Y, Magaret CA, Giorgi EE, Korber B, Edlefsen PT, Rossenkhan R, Juraska M, Rudnicki E, Kochar N, Huang Y, Carpp LN, ... ... Mullins JI, et al. Neutralization titer biomarker for antibody-mediated prevention of HIV-1 acquisition. Nature Medicine. PMID 35995954 DOI: 10.1038/s41591-022-01953-6  0.393
2022 Sun C, Liu L, Pérez L, Li X, Liu Y, Xu P, Boritz EA, Mullins JI, Abate AR. Droplet-microfluidics-assisted sequencing of HIV proviruses and their integration sites in cells from people on antiretroviral therapy. Nature Biomedical Engineering. PMID 35347274 DOI: 10.1038/s41551-022-00864-8  0.459
2022 Christian ML, Dapp MJ, Scharffenberger SC, Jones H, Song C, Frenkel LM, Krumm A, Mullins JI, Rawlings DJ. CRISPR/Cas9-Mediated Insertion of HIV Long Terminal Repeat within Promotes Expansion of T Regulatory-like Cells. Journal of Immunology (Baltimore, Md. : 1950). PMID 35264460 DOI: 10.4049/jimmunol.2100491  0.45
2021 Long JE, Tordoff DM, Reisner SL, Dasgupta S, Mayer KH, Mullins JI, Lama JR, Herbeck JT, Duerr A. HIV transmission patterns among transgender women, their cisgender male partners, and cisgender MSM in Lima, Peru: A molecular epidemiologic and phylodynamic analysis. Lancet Regional Health. Americas. 6. PMID 35178526 DOI: 10.1016/j.lana.2021.100121  0.347
2021 Lewitus E, Sanders-Buell E, Bose M, O'Sullivan AM, Poltavee K, Li Y, Bai H, Mdluli T, Donofrio G, Slike B, Zhao H, Wong K, Chen L, Miller S, Lee J, ... ... Mullins JI, et al. RV144 vaccine imprinting constrained HIV-1 evolution following breakthrough infection. Virus Evolution. 7: veab057. PMID 34532060 DOI: 10.1093/ve/veab057  0.375
2021 O'Connor MA, Munson PV, Dross SE, Tunggal HC, Lewis TB, Osborn J, Peterson CW, Huang MW, Moats C, Smedley J, Jerome KR, Kiem HP, Bagley KC, Mullins JI, Fuller DH. A Gut Reaction to SIV and SHIV Infection: Lower Dysregulation of Mucosal T Cells during Acute Infection Is Associated with Greater Viral Suppression during cART. Viruses. 13. PMID 34452474 DOI: 10.3390/v13081609  0.372
2021 Cole B, Lambrechts L, Gantner P, Noppe Y, Bonine N, Witkowski W, Chen L, Palmer S, Mullins JI, Chomont N, Pardons M, Vandekerckhove L. In-depth single-cell analysis of translation-competent HIV-1 reservoirs identifies cellular sources of plasma viremia. Nature Communications. 12: 3727. PMID 34140517 DOI: 10.1038/s41467-021-24080-1  0.383
2021 Corey L, Gilbert PB, Juraska M, Montefiori DC, Morris L, Karuna ST, Edupuganti S, Mgodi NM, deCamp AC, Rudnicki E, Huang Y, Gonzales P, Cabello R, Orrell C, Lama JR, ... ... Mullins JI, et al. Two Randomized Trials of Neutralizing Antibodies to Prevent HIV-1 Acquisition. The New England Journal of Medicine. 384: 1003-1014. PMID 33730454 DOI: 10.1056/NEJMoa2031738  0.407
2020 Aamer HA, McClure J, Ko D, Maenza J, Collier AC, Coombs RW, Mullins JI, Frenkel LM. Cells producing residual viremia during antiretroviral treatment appear to contribute to rebound viremia following interruption of treatment. Plos Pathogens. 16: e1008791. PMID 32841299 DOI: 10.1371/Journal.Ppat.1008791  0.497
2019 Trebelcock WL, Lama JR, Duerr A, Sanchez H, Cabello R, Gilada T, Segura P, Reisner SL, Mayer KH, Mullins J, Bender Ignacio RA. HIV pretreatment drug resistance among cisgender MSM and transgender women from Lima, Peru. Journal of the International Aids Society. 22: e25411. PMID 31773888 DOI: 10.1002/Jia2.25411  0.314
2019 Williams-Wietzikoski CA, Campbell MS, Payant R, Lam A, Zhao H, Huang H, Wald A, Stevens W, Gray G, Farquhar C, Rees H, Celum C, Mullins JI, Lingappa JR, Frenkel LM. Comparisons of human immunodeficiency virus type 1 envelope variants in blood and genital fluids near the time of male-to-female transmission. Journal of Virology. PMID 30996101 DOI: 10.1128/Jvi.01769-18  0.482
2019 Bull M, McKernan J, Styrchak S, Kraft K, Hitti J, Cohn SE, Tapia K, Deng W, Holte S, Mullins JI, Coombs RW, Frenkel L. Phylogenetic analyses comparing HIV sequences from plasma at virologic failure to cervix vs. blood sequences from antecedent antiretroviral therapy suppression. Aids Research and Human Retroviruses. PMID 30892052 DOI: 10.1089/Aid.2018.0211  0.526
2019 Dross S, Peterson C, O’Connor M, Tunggal H, Li J, Jerome K, Kiem H, Felber B, Mullins J, Fuller D. HIV persistence despite reservoir decay during combinatorial immunotherapy including therapeutic conserved elements (CE) DNA vaccination, αPD-1 therapy, GS-986 TLR7-agonism, and CCR5 gene-edited CD4 T cell infusion in rhesus macaques Journal of Virus Eradication. 5: 49-50. DOI: 10.1016/S2055-6640(20)30204-1  0.452
2018 O'Connor MA, Munson PV, Tunggal H, Hajari N, Lewis TB, Bratt D, Moats C, Smedley J, Bagley K, Mullins JI, Fuller D. Mucosal T helper 17 and T regulatory cell homeostasis correlates with acute SIV viremia and responsiveness to antiretroviral therapy in macaques. Aids Research and Human Retroviruses. PMID 30398361 DOI: 10.1089/Aid.2018.0184  0.463
2018 Hu X, Lu Z, Valentin A, Rosati M, Broderick KE, Sardesai NY, Marx PA, Mullins JI, Pavlakis GN, Felber BK. Gag and Env Conserved Element CE DNA Vaccines Elicit Broad Cytotoxic T Cell Responses Targeting Subdominant Epitopes of HIV and SIV Able to Recognize Virus-infected Cells in Macaques. Human Vaccines & Immunotherapeutics. 1-51. PMID 29939820 DOI: 10.1080/21645515.2018.1489949  0.493
2018 Hu X, Valentin A, Cai Y, Dayton F, Rosati M, Ramirez-Salazar EG, Kulkarni V, Broderick KE, Sardesai NY, Wyatt LS, Earl PL, Moss B, Mullins JI, Pavlakis GN, Felber BK. DNA-vaccine induced long-lasting cytotoxic T cells targeting conserved elements of HIV Gag are boosted upon DNA or rMVA vaccination. Human Gene Therapy. PMID 29869530 DOI: 10.1089/Hum.2018.065  0.464
2018 Stekler J, Tapia K, Maenza J, Stevens CE, Ure G, O'Neal J, Lane A, Mullins JI, Coombs R, Holte SE, Collier AC. No time to delay! Fiebig stages and referral in acute HIV infection: Seattle Primary Infection Program Experience. Aids Research and Human Retroviruses. PMID 29756456 DOI: 10.1089/Aid.2017.0276  0.473
2018 Munson P, Liu Y, Bratt D, Fuller JT, Hu X, Pavlakis GN, Felber BK, Mullins JI, Fuller DH. Therapeutic conserved elements (CE) DNA vaccine induces strong T-cell responses against highly conserved viral sequences during simian-human immunodeficiency virus infection. Human Vaccines & Immunotherapeutics. 1-12. PMID 29648490 DOI: 10.1080/21645515.2018.1448328  0.462
2018 Stekler JD, Milne R, Payant R, Beck I, Herbeck J, Maust B, Deng W, Tapia K, Holte S, Maenza J, Stevens CE, Mullins JI, Collier AC, Frenkel LM. Transmission of HIV-1 drug resistance mutations within partner-pairs: A cross-sectional study of a primary HIV infection cohort. Plos Medicine. 15: e1002537. PMID 29584723 DOI: 10.1371/Journal.Pmed.1002537  0.466
2017 Herbeck JT, Peebles K, Edlefsen PT, Rolland M, Murphy JT, Gottlieb GS, Abernethy N, Mullins JI, Mittler JE, Goodreau SM. HIV population-level adaptation can rapidly diminish the impact of a partially effective vaccine. Vaccine. PMID 29241646 DOI: 10.1016/J.Vaccine.2017.12.004  0.455
2017 deCamp AC, Rolland M, Edlefsen PT, Sanders-Buell E, Hall B, Magaret CA, Fiore-Gartland AJ, Juraska M, Carpp LN, Karuna ST, Bose M, LePore S, Miller S, O'Sullivan A, Poltavee K, ... ... Mullins JI, et al. Sieve analysis of breakthrough HIV-1 sequences in HVTN 505 identifies vaccine pressure targeting the CD4 binding site of Env-gp120. Plos One. 12: e0185959. PMID 29149197 DOI: 10.1371/Journal.Pone.0185959  0.44
2017 Mackelprang RD, Bamshad MJ, Chong JX, Hou X, Buckingham KJ, Shively K, deBruyn G, Mugo NR, Mullins JI, McElrath MJ, Baeten JM, Celum C, Emond MJ, Lingappa JR. Whole genome sequencing of extreme phenotypes identifies variants in CD101 and UBE2V1 associated with increased risk of sexually acquired HIV-1. Plos Pathogens. 13: e1006703. PMID 29108000 DOI: 10.1371/Journal.Ppat.1006703  0.514
2017 Dapp MJ, Kober KM, Chen L, Westfall DH, Wong K, Zhao H, Hall BM, Deng W, Sibley T, Ghorai S, Kim K, Chen N, McHugh S, Au L, Cohen M, ... ... Mullins JI, et al. Patterns and rates of viral evolution in HIV-1 subtype B infected females and males. Plos One. 12: e0182443. PMID 29045410 DOI: 10.1371/Journal.Pone.0182443  0.498
2017 Hu X, Valentin A, Rosati M, Manocheewa S, Alicea C, Chowdhury B, Bear J, Broderick KE, Sardesai NY, Le Gall S, Mullins JI, Pavlakis GN, Felber BK. HIV Env Conserved Element DNA Vaccine Alters Immunodominance in Macaques. Human Vaccines & Immunotherapeutics. 0. PMID 28678607 DOI: 10.1080/21645515.2017.1339852  0.468
2017 Mullins JI, Frenkel LM. Clonal Expansion of Human Immunodeficiency Virus-Infected Cells and Human Immunodeficiency Virus Persistence During Antiretroviral Therapy. The Journal of Infectious Diseases. 215: S119-S127. PMID 28520966 DOI: 10.1093/Infdis/Jiw636  0.558
2017 Nakamura KJ, Heath L, Sobrera ER, Wilkinson TA, Semrau K, Kankasa C, Tobin NH, Webb NE, Lee B, Thea DM, Kuhn L, Mullins JI, Aldrovandi GM. Breast milk and in utero transmission of HIV-1 select for envelope variants with unique molecular signatures. Retrovirology. 14: 6. PMID 28122636 DOI: 10.1186/S12977-017-0331-Z  0.543
2016 Goldman JD, Frenkel LM, Mullins JI. HIV Transmission During Condomless Sex With a Seropositive Partner With Suppressed Infection. Jama. 316: 2044-2045. PMID 27838715 DOI: 10.1001/Jama.2016.16030  0.511
2016 Hertz T, Logan MG, Rolland M, Magaret CA, Rademeyer C, Fiore-Gartland A, Edlefsen PT, DeCamp A, Ahmed H, Ngandu N, Larsen BB, Frahm N, Marais J, Thebus R, Geraghty D, ... ... Mullins JI, et al. A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial. Vaccine. PMID 27756485 DOI: 10.1016/J.Vaccine.2016.09.054  0.435
2016 Hu X, Valentin A, Dayton F, Kulkarni V, Alicea C, Rosati M, Chowdhury B, Gautam R, Broderick KE, Sardesai NY, Martin MA, Mullins JI, Pavlakis GN, Felber BK. DNA Prime-Boost Vaccine Regimen To Increase Breadth, Magnitude, and Cytotoxicity of the Cellular Immune Responses to Subdominant Gag Epitopes of Simian Immunodeficiency Virus and HIV. Journal of Immunology (Baltimore, Md. : 1950). PMID 27733554 DOI: 10.4049/Jimmunol.1600697  0.486
2016 Nedellec R, Herbeck J, Hunt PW, Deeks SG, Mullins JI, Anton ED, Reeves JD, Mosier DE. High Sequence Diversity and Rapid Virus Turnover Contribute to Higher Rates of Coreceptor Switching in Treatment-Experienced Subjects with HIV-1 Viremia. Aids Research and Human Retroviruses. PMID 27604829 DOI: 10.1089/Aid.2016.0153  0.488
2016 Smith KN, Mailliard RB, Piazza PA, Fischer W, Korber BT, Fecek RJ, Ratner D, Gupta P, Mullins JI, Rinaldo CR. Erratum for Smith et al., Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells. Mbio. 7. PMID 27406569 DOI: 10.1128/Mbio.01012-16  0.402
2016 Smith KN, Mailliard RB, Piazza PA, Fischer W, Korber BT, Fecek RJ, Ratner D, Gupta P, Mullins JI, Rinaldo CR. Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells. Mbio. 7. PMID 27247230 DOI: 10.1128/Mbio.00473-16  0.529
2016 Collier AC, Chun TW, Maenza J, Coombs RW, Tapia K, Chang M, Stevens CE, Justement JS, Murray D, Stekler JD, Mullins JI, Holte SE. A Pilot Study of Raltegravir Plus Combination Antiretroviral Therapy in Early Human Immunodeficiency Virus Infection: Challenges and Lessons Learned. Bioresearch Open Access. 5: 15-21. PMID 26862469 DOI: 10.1089/biores.2015.0038  0.468
2016 Felber B, Hu X, Valentin A, Dayton F, Cai Y, Rosati M, Alicea C, Sardesai N, Gautam R, Martin M, Mullins J, Pavlakis G. 34 Novel conserved element HIV/SIV DNA vaccines maximize breadth and magnitude of immune response Journal of Virus Eradication. 2: 20. DOI: 10.1016/S2055-6640(20)30979-1  0.45
2015 Manocheewa S, Mittler JE, Samudrala R, Mullins JI. Composite Sequence-Structure Stability Models as Screening Tools for Identifying Vulnerable Targets for HIV Drug and Vaccine Development. Viruses. 7: 5718-35. PMID 26556362 DOI: 10.3390/V7112901  0.463
2015 McLaren PJ, Coulonges C, Bartha I, Lenz TL, Deutsch AJ, Bashirova A, Buchbinder S, Carrington MN, Cossarizza A, Dalmau J, De Luca A, Goedert JJ, Gurdasani D, Haas DW, Herbeck JT, ... ... Mullins JI, et al. Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553974 DOI: 10.1073/Pnas.1514867112  0.48
2015 Peterson CW, Haworth KG, Polacino P, Huang ML, Sykes C, Obenza WM, Repetto AC, Kashuba A, Bumgarner R, DeRosa SC, Woolfrey AE, Jerome KR, Mullins JI, Hu SL, Kiem HP. Lack of viral control and development of combination antiretroviral therapy escape mutations in macaques after bone marrow transplantation. Aids (London, England). 29: 1597-606. PMID 26372270 DOI: 10.1097/Qad.0000000000000702  0.323
2015 Janes H, Herbeck JT, Tovanabutra S, Thomas R, Frahm N, Duerr A, Hural J, Corey L, Self SG, Buchbinder SP, McElrath MJ, O'Connell RJ, Paris RM, Rerks-Ngarm S, Nitayaphan S, ... ... Mullins JI, et al. HIV-1 infections with multiple founders are associated with higher viral loads than infections with single founders. Nature Medicine. PMID 26322580 DOI: 10.1038/Nm.3932  0.556
2015 Iyer S, Casey E, Bouzek H, Kim M, Deng W, Larsen BB, Zhao H, Bumgarner RE, Rolland M, Mullins JI. Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection. Plos One. 10: e0135903. PMID 26317928 DOI: 10.1371/Journal.Pone.0135903  0.484
2015 Olson SC, Ngo-Giang-Huong N, Beck I, Deng W, Britto P, Shapiro DE, Bumgarner RE, Mullins JI, Van Dyke RB, Jourdain G, Frenkel LM. Resistance detected by pyrosequencing following zidovudine monotherapy for prevention of HIV-1 mother-to-child-transmission. Aids (London, England). 29: 1467-71. PMID 26244386 DOI: 10.1097/Qad.0000000000000737  0.418
2015 Sunshine JE, Larsen BB, Maust B, Casey E, Deng W, Chen L, Westfall DH, Kim M, Zhao H, Ghorai S, Lanxon-Cookson E, Rolland M, Collier AC, Maenza J, Mullins JI, et al. Fitness-balanced escape determines resolution of dynamic founder virus escape processes in HIV-1 infection. Journal of Virology. PMID 26223634 DOI: 10.1128/Jvi.01876-15  0.54
2015 Manocheewa S, Lanxon-Cookson EC, Liu Y, Swain JV, McClure J, Rao U, Maust B, Deng W, Sunshine JE, Kim M, Rolland M, Mullins JI. Pairwise growth competition assay for determining the replication fitness of human immunodeficiency viruses. Journal of Visualized Experiments : Jove. e52610. PMID 25993602 DOI: 10.3791/52610  0.418
2015 Maenza J, Tapia K, Holte S, Stekler JD, Stevens CE, Mullins JI, Collier AC. How often does treatment of primary HIV lead to post-treatment control? Antiviral Therapy. PMID 25906138 DOI: 10.3851/Imp2963  0.469
2015 Mothe B, Hu X, Llano A, Rosati M, Olvera A, Kulkarni V, Valentin A, Alicea C, Pilkington GR, Sardesai NY, Rocafort M, Crespo M, Carrillo J, Marco A, Mullins JI, et al. A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques. Journal of Translational Medicine. 13: 60. PMID 25879820 DOI: 10.1186/S12967-015-0392-5  0.434
2015 Smith RA, Raugi DN, Pan C, Sow PS, Seydi M, Mullins JI, Gottlieb GS. In vitro activity of dolutegravir against wild-type and integrase inhibitor-resistant HIV-2. Retrovirology. 12: 10. PMID 25808007 DOI: 10.1186/S12977-015-0146-8  0.541
2015 Herbeck J, Ghorai S, Chen L, Rinaldo CR, Margolick JB, Detels R, Jacobson L, Wolinsky S, Mullins JI. p21(WAF1/CIP1) RNA expression in highly HIV-1 exposed, uninfected individuals. Plos One. 10: e0119218. PMID 25746435 DOI: 10.1371/Journal.Pone.0119218  0.485
2015 Edlefsen PT, Rolland M, Hertz T, Tovanabutra S, Gartland AJ, deCamp AC, Magaret CA, Ahmed H, Gottardo R, Juraska M, McCoy C, Larsen BB, Sanders-Buell E, Carrico C, Menis S, ... ... Mullins JI, et al. Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial. Plos Computational Biology. 11: e1003973. PMID 25646817 DOI: 10.1371/Journal.Pcbi.1003973  0.422
2015 Ceresola ER, Nozza S, Sampaolo M, Pignataro AR, Saita D, Ferrarese R, Ripa M, Deng W, Mullins JI, Boeri E, Tambussi G, Toniolo A, Lazzarin A, Clementi M, Canducci F. Performance of commonly used genotypic assays and comparison with phenotypic assays of HIV-1 coreceptor tropism in acutely HIV-1-infected patients. The Journal of Antimicrobial Chemotherapy. 70: 1391-5. PMID 25608585 DOI: 10.1093/Jac/Dku573  0.544
2015 Mackelprang RD, Carrington M, Thomas KK, Hughes JP, Baeten JM, Wald A, Farquhar C, Fife K, Campbell MS, Kapiga S, Gao X, Mullins JI, Lingappa JR. Host genetic and viral determinants of HIV-1 RNA set point among HIV-1 seroconverters from sub-saharan Africa. Journal of Virology. 89: 2104-11. PMID 25473042 DOI: 10.1128/Jvi.01573-14  0.497
2015 Stekler JD, McKernan J, Milne R, Tapia KA, Mykhalchenko K, Holte S, Maenza J, Stevens CE, Buskin SE, Mullins JI, Frenkel LM, Collier AC. Lack of resistance to integrase inhibitors among antiretroviral-naive subjects with primary HIV-1 infection, 2007-2013. Antiviral Therapy. 20: 77-80. PMID 24831260 DOI: 10.3851/Imp2780  0.472
2015 Felber BK, Valentin A, Mullins JI, Pavlakis GN. Potent CTL responses to conserved element of HIV to improve therapeutic DNA vaccine efficacy Journal of Virus Eradication. 1: 15. DOI: 10.1016/S2055-6640(20)31335-2  0.443
2014 Zolla-Pazner S, Edlefsen PT, Rolland M, Kong XP, deCamp A, Gottardo R, Williams C, Tovanabutra S, Sharpe-Cohen S, Mullins JI, deSouza MS, Karasavvas N, Nitayaphan S, Rerks-Ngarm S, Pitisuttihum P, et al. Vaccine-induced Human Antibodies Specific for the Third Variable Region of HIV-1 gp120 Impose Immune Pressure on Infecting Viruses. Ebiomedicine. 1: 37-45. PMID 25599085 DOI: 10.1016/J.Ebiom.2014.10.022  0.469
2014 Moroni M, Ghezzi S, Baroli P, Heltai S, De Battista D, Pensieroso S, Cavarelli M, Dispinseri S, Vanni I, Pastori C, Zerbi P, Tosoni A, Vicenzi E, Nebuloni M, Wong K, ... ... Mullins JI, et al. Spontaneous control of HIV-1 viremia in a subject with protective HLA-B plus HLA-C alleles and HLA-C associated single nucleotide polymorphisms. Journal of Translational Medicine. 12: 335. PMID 25477316 DOI: 10.1186/S12967-014-0335-6  0.493
2014 Dommaraju K, Kijak G, Carlson JM, Larsen BB, Tovanabutra S, Geraghty DE, Deng W, Maust BS, Edlefsen PT, Sanders-Buell E, Ratto-Kim S, deSouza MS, Rerks-Ngarm S, Nitayaphan S, Pitisuttihum P, ... ... Mullins JI, et al. CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants. Plos One. 9: e111334. PMID 25350851 DOI: 10.1371/Journal.Pone.0111334  0.396
2014 Kulkarni V, Valentin A, Rosati M, Rolland M, Mullins JI, Pavlakis GN, Felber BK. HIV-1 conserved elements p24CE DNA vaccine induces humoral immune responses with broad epitope recognition in macaques. Plos One. 9: e111085. PMID 25338098 DOI: 10.1371/Journal.Pone.0111085  0.378
2014 Wagner TA, McLaughlin S, Garg K, Cheung CY, Larsen BB, Styrchak S, Huang HC, Edlefsen PT, Mullins JI, Frenkel LM. HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection. Science (New York, N.Y.). 345: 570-3. PMID 25011556 DOI: 10.1126/Science.1256304  0.555
2014 Herbeck JT, Mittler JE, Gottlieb GS, Mullins JI. An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load. Plos Computational Biology. 10: e1003673. PMID 24945322 DOI: 10.1371/Journal.Pcbi.1003673  0.537
2014 Smith KN, Mailliard RB, Larsen BB, Wong K, Gupta P, Mullins JI, Rinaldo CR. Dendritic cells restore CD8+ T cell reactivity to autologous HIV-1. Journal of Virology. 88: 9976-90. PMID 24942586 DOI: 10.1128/Jvi.01275-14  0.474
2014 Castro E, Zhao H, Cavassini M, Mullins JI, Pantaleo G, Bart PA. HIV-1 superinfection with a triple-class drug-resistant strain in a patient successfully controlled with antiretroviral treatment. Aids (London, England). 28: 1840-4. PMID 24911350 DOI: 10.1097/Qad.0000000000000342  0.528
2014 Gartland AJ, Li S, McNevin J, Tomaras GD, Gottardo R, Janes H, Fong Y, Morris D, Geraghty DE, Kijak GH, Edlefsen PT, Frahm N, Larsen BB, Tovanabutra S, Sanders-Buell E, ... ... Mullins JI, et al. Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial. Journal of Virology. 88: 8242-55. PMID 24829343 DOI: 10.1128/Jvi.01164-14  0.396
2014 Beck IA, Deng W, Payant R, Hall R, Bumgarner RE, Mullins JI, Frenkel LM. Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing. Journal of Clinical Microbiology. 52: 2320-7. PMID 24740080 DOI: 10.1128/Jcm.00306-14  0.44
2014 Liu Y, Rao U, McClure J, Konopa P, Manocheewa S, Kim M, Chen L, Troyer RM, Tebit DM, Holte S, Arts EJ, Mullins JI. Impact of mutations in highly conserved amino acids of the HIV-1 Gag-p24 and Env-gp120 proteins on viral replication in different genetic backgrounds. Plos One. 9: e94240. PMID 24713822 DOI: 10.1371/Journal.Pone.0094240  0.511
2014 Melhem NM, Smith KN, Huang XL, Colleton BA, Jiang W, Mailliard RB, Mullins JI, Rinaldo CR. The impact of viral evolution and frequency of variant epitopes on primary and memory human immunodeficiency virus type 1-specific CD8⁺ T cell responses. Virology. 450: 34-48. PMID 24503065 DOI: 10.1016/J.Virol.2013.10.015  0.501
2014 Kulkarni V, Valentin A, Rosati M, Alicea C, Singh AK, Jalah R, Broderick KE, Sardesai NY, Le Gall S, Mothe B, Brander C, Rolland M, Mullins JI, Pavlakis GN, Felber BK. Altered response hierarchy and increased T-cell breadth upon HIV-1 conserved element DNA vaccination in macaques. Plos One. 9: e86254. PMID 24465991 DOI: 10.1371/Journal.Pone.0086254  0.404
2014 Bigham AW, Mackelprang RD, Celum C, De Bruyn G, Beima-Sofie K, John-Stewart G, Ronald A, Mugo NR, Buckingham K, Bamshad MJ, Mullins JI, McElrath MJ, Lingappa JR. Variants in host viral replication cycle genes are associated with heterosexual HIV-1 acquisition in Africans. Journal of Acquired Immune Deficiency Syndromes (1999). 66: 127-34. PMID 24463784 DOI: 10.1097/Qai.0000000000000113  0.519
2014 Kahle E, Campbell M, Lingappa J, Donnell D, Celum C, Ondondo R, Mujugira A, Fife K, Mugo N, Kapiga S, Mullins JI, Baeten JM. HIV-1 subtype C is not associated with higher risk of heterosexual HIV-1 transmission: a multinational study among HIV-1 serodiscordant couples. Aids (London, England). 28: 235-43. PMID 24413311 DOI: 10.1097/Qad.0000000000000024  0.504
2014 Mackelprang RD, Bigham AW, Celum C, de Bruyn G, Beima-Sofie K, John-Stewart G, Ronald A, Mugo NR, Buckingham KJ, Bamshad MJ, Mullins JI, McElrath MJ, Lingappa JR. Toll-like receptor polymorphism associations with HIV-1 outcomes among sub-Saharan Africans. The Journal of Infectious Diseases. 209: 1623-7. PMID 24325963 DOI: 10.1093/Infdis/Jit807  0.477
2014 Sunshine J, Kim M, Carlson JM, Heckerman D, Czartoski J, Migueles SA, Maenza J, McElrath MJ, Mullins JI, Frahm N. Increased sequence coverage through combined targeting of variant and conserved epitopes correlates with control of HIV replication. Journal of Virology. 88: 1354-65. PMID 24227851 DOI: 10.1128/Jvi.02361-13  0.57
2014 Mothe B, Hu X, Llano A, Rosati M, Olvera A, Kulkarni V, Valentin A, Alicea C, Sardesai NJ, Rocafort M, Crespo M, Carrillo J, Marco A, Mullins JI, Dorrell L, et al. A Novel T-cell Vaccine Eliciting T-cell Specificities Associated with Control of HIV-1 In Humans Is Highly Immunogenic in Mice and Macaques Aids Research and Human Retroviruses. 30: A76-A76. DOI: 10.1089/Aid.2014.5140B.Abstract  0.429
2013 Dobrowsky TM, Rabi SA, Nedellec R, Daniels BR, Mullins JI, Mosier DE, Siliciano RF, Wirtz D. Adhesion and fusion efficiencies of human immunodeficiency virus type 1 (HIV-1) surface proteins. Scientific Reports. 3: 3014. PMID 24145278 DOI: 10.1038/Srep03014  0.518
2013 Larsen BB, Chen L, Maust BS, Kim M, Zhao H, Deng W, Westfall D, Beck I, Frenkel LM, Mullins JI. Improved detection of rare HIV-1 variants using 454 pyrosequencing. Plos One. 8: e76502. PMID 24098517 DOI: 10.1371/Journal.Pone.0076502  0.499
2013 Iyer S, Bouzek H, Deng W, Larsen B, Casey E, Mullins JI. Quality score based identification and correction of pyrosequencing errors. Plos One. 8: e73015. PMID 24039850 DOI: 10.1371/Journal.Pone.0073015  0.331
2013 Shankarappa R, Mullins JI. Inferring viral population structures using heteroduplex mobility and DNA sequence analyses. Journal of Virological Methods. 194: 169-77. PMID 23994080 DOI: 10.1016/J.Jviromet.2013.08.012  0.466
2013 McLaren PJ, Coulonges C, Ripke S, van den Berg L, Buchbinder S, Carrington M, Cossarizza A, Dalmau J, Deeks SG, Delaneau O, De Luca A, Goedert JJ, Haas D, Herbeck JT, Kathiresan S, ... ... Mullins JI, et al. Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls. Plos Pathogens. 9: e1003515. PMID 23935489 DOI: 10.1371/Journal.Ppat.1003515  0.5
2013 Lanxon-Cookson EC, Swain JV, Manocheewa S, Smith RA, Maust B, Kim M, Westfall D, Rolland M, Mullins JI. Factors affecting relative fitness measurements in pairwise competition assays of human immunodeficiency viruses. Journal of Virological Methods. 194: 7-13. PMID 23933395 DOI: 10.1016/J.Jviromet.2013.07.062  0.4
2013 Mailliard RB, Smith KN, Fecek RJ, Rappocciolo G, Nascimento EJ, Marques ET, Watkins SC, Mullins JI, Rinaldo CR. Selective induction of CTL helper rather than killer activity by natural epitope variants promotes dendritic cell-mediated HIV-1 dissemination. Journal of Immunology (Baltimore, Md. : 1950). 191: 2570-80. PMID 23913962 DOI: 10.4049/Jimmunol.1300373  0.556
2013 Manocheewa S, Swain JV, Lanxon-Cookson E, Rolland M, Mullins JI. Fitness costs of mutations at the HIV-1 capsid hexamerization interface. Plos One. 8: e66065. PMID 23785468 DOI: 10.1371/Journal.Pone.0066065  0.457
2013 Kunwar P, Hawkins N, Dinges WL, Liu Y, Gabriel EE, Swan DA, Stevens CE, Maenza J, Collier AC, Mullins JI, Hertz T, Yu X, Horton H. Superior control of HIV-1 replication by CD8+ T cells targeting conserved epitopes: implications for HIV vaccine design. Plos One. 8: e64405. PMID 23741326 DOI: 10.1371/Journal.Pone.0064405  0.499
2013 Raugi DN, Smith RA, Ba S, Toure M, Traore F, Sall F, Pan C, Blankenship L, Montano A, Olson J, Dia Badiane NM, Mullins JI, Kiviat NB, Hawes SE, Sow PS, et al. Complex patterns of protease inhibitor resistance among antiretroviral treatment-experienced HIV-2 patients from Senegal: implications for second-line therapy. Antimicrobial Agents and Chemotherapy. 57: 2751-60. PMID 23571535 DOI: 10.1128/Aac.00405-13  0.504
2013 Kulkarni V, Rosati M, Valentin A, Ganneru B, Singh AK, Yan J, Rolland M, Alicea C, Beach RK, Zhang GM, Le Gall S, Broderick KE, Sardesai NY, Heckerman D, Mothe B, ... ... Mullins JI, et al. HIV-1 p24(gag) derived conserved element DNA vaccine increases the breadth of immune response in mice. Plos One. 8: e60245. PMID 23555935 DOI: 10.1371/Journal.Pone.0060245  0.489
2013 Rolland M, Manocheewa S, Swain JV, Lanxon-Cookson EC, Kim M, Westfall DH, Larsen BB, Gilbert PB, Mullins JI. HIV-1 conserved-element vaccines: relationship between sequence conservation and replicative capacity. Journal of Virology. 87: 5461-7. PMID 23468488 DOI: 10.1128/Jvi.03033-12  0.477
2013 Bull ME, Heath LM, McKernan-Mullin JL, Kraft KM, Acevedo L, Hitti JE, Cohn SE, Tapia KA, Holte SE, Dragavon JA, Coombs RW, Mullins JI, Frenkel LM. Human immunodeficiency viruses appear compartmentalized to the female genital tract in cross-sectional analyses but genital lineages do not persist over time. The Journal of Infectious Diseases. 207: 1206-15. PMID 23315326 DOI: 10.1093/Infdis/Jit016  0.504
2013 Campbell MS, Kahle EM, Celum C, Lingappa JR, Kapiga S, Mujugira A, Mugo NR, Fife KH, Mullins JI, Baeten JM. Plasma viral loads during early HIV-1 infection are similar in subtype C- and non-subtype C-infected African seroconverters. The Journal of Infectious Diseases. 207: 1166-70. PMID 23315322 DOI: 10.1093/Infdis/Jit015  0.489
2013 Nakamura KJ, Cerini C, Sobrera ER, Heath L, Sinkala M, Kankasa C, Thea DM, Mullins JI, Kuhn L, Aldrovandi GM. Coverage of primary mother-to-child HIV transmission isolates by second-generation broadly neutralizing antibodies. Aids (London, England). 27: 337-46. PMID 23296195 DOI: 10.1097/Qad.0B013E32835Cadd6  0.477
2013 Liu Y, Holte S, Rao U, McClure J, Konopa P, Swain JV, Lanxon-Cookson E, Kim M, Chen L, Mullins JI. A sensitive real-time PCR based assay to estimate the impact of amino acid substitutions on the competitive replication fitness of human immunodeficiency virus type 1 in cell culture. Journal of Virological Methods. 189: 157-66. PMID 23201292 DOI: 10.1016/J.Jviromet.2012.10.016  0.484
2013 Wagner TA, McKernan JL, Tobin NH, Tapia KA, Mullins JI, Frenkel LM. An increasing proportion of monotypic HIV-1 DNA sequences during antiretroviral treatment suggests proliferation of HIV-infected cells. Journal of Virology. 87: 1770-8. PMID 23175380 DOI: 10.1128/Jvi.01985-12  0.576
2013 Lingappa JR, Thomas KK, Hughes JP, Baeten JM, Wald A, Farquhar C, de Bruyn G, Fife KH, Campbell MS, Kapiga S, Mullins JI, Celum C. Partner characteristics predicting HIV-1 set point in sexually acquired HIV-1 among African seroconverters. Aids Research and Human Retroviruses. 29: 164-71. PMID 23061422 DOI: 10.1089/Aid.2012.0206  0.532
2012 Smith RA, Raugi DN, Pan C, Coyne M, Hernandez A, Church B, Parker K, Mullins JI, Sow PS, Gottlieb GS. Three main mutational pathways in HIV-2 lead to high-level raltegravir and elvitegravir resistance: implications for emerging HIV-2 treatment regimens. Plos One. 7: e45372. PMID 23028968 DOI: 10.1371/Journal.Pone.0045372  0.534
2012 Rolland M, Edlefsen PT, Larsen BB, Tovanabutra S, Sanders-Buell E, Hertz T, deCamp AC, Carrico C, Menis S, Magaret CA, Ahmed H, Juraska M, Chen L, Konopa P, Nariya S, ... ... Mullins JI, et al. Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature. 490: 417-20. PMID 22960785 DOI: 10.1038/Nature11519  0.454
2012 Janes H, Frahm N, DeCamp A, Rolland M, Gabriel E, Wolfson J, Hertz T, Kallas E, Goepfert P, Friedrich DP, Corey L, Mullins JI, McElrath MJ, Gilbert P. MRKAd5 HIV-1 Gag/Pol/Nef vaccine-induced T-cell responses inadequately predict distance of breakthrough HIV-1 sequences to the vaccine or viral load. Plos One. 7: e43396. PMID 22952672 DOI: 10.1371/Journal.Pone.0043396  0.519
2012 Deeks SG, Autran B, Berkhout B, Benkirane M, Cairns S, Chomont N, Chun TW, Churchill M, Di Mascio M, Katlama C, Lafeuillade A, Landay A, Lederman M, Lewin SR, ... ... Mullins JI, et al. Towards an HIV cure: a global scientific strategy. Nature Reviews. Immunology. 12: 607-14. PMID 22814509 DOI: 10.1038/Nri3262  0.501
2012 Mothe B, Llano A, Ibarrondo J, Zamarreño J, Schiaulini M, Miranda C, Ruiz-Riol M, Berger CT, Herrero MJ, Palou E, Plana M, Rolland M, Khatri A, Heckerman D, Pereyra F, ... ... Mullins JI, et al. CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control. Plos One. 7: e29717. PMID 22238642 DOI: 10.1371/Journal.Pone.0029717  0.511
2012 Herbeck JT, Müller V, Maust BS, Ledergerber B, Torti C, Di Giambenedetto S, Gras L, Günthard HF, Jacobson LP, Mullins JI, Gottlieb GS. Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. Aids (London, England). 26: 193-205. PMID 22089381 DOI: 10.1097/Qad.0B013E32834Db418  0.505
2012 Mailliard RB, Smith K, Fecek RJ, Zaccard CR, Watkins SC, Rappocciolo G, Mullins J, Rinaldo CR. HIV-1 selectively exploits cross-reactive CTL “help” to promote dysfunctional programming of pro-inflammatory dendritic cells Retrovirology. 9: 282. DOI: 10.1186/1742-4690-9-S2-P282  0.552
2012 Pavlakis G, Kulkarni V, Valentin A, Rosati M, Sardesai N, Mothe B, Brander C, LeGall S, Weiner D, Rolland M, Mullins J, Felber B. DNA vaccines expressing conserved elements provide potent and broad immune responses Retrovirology. 9: 1-1. DOI: 10.1186/1742-4690-9-S2-O67  0.43
2012 Mullins JI. 125 The Dynamics of Early HIV Infection and a Consequent New Approach to Vaccine Design Jaids Journal of Acquired Immune Deficiency Syndromes. 59: 51. DOI: 10.1097/01.Qai.0000413744.24019.59  0.459
2011 Lingappa JR, Petrovski S, Kahle E, Fellay J, Shianna K, McElrath MJ, Thomas KK, Baeten JM, Celum C, Wald A, de Bruyn G, Mullins JI, Nakku-Joloba E, Farquhar C, Essex M, et al. Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. Plos One. 6: e28632. PMID 22174851 DOI: 10.1371/Journal.Pone.0028632  0.546
2011 Mothe B, Llano A, Ibarrondo J, Daniels M, Miranda C, Zamarreño J, Bach V, Zuniga R, Pérez-Álvarez S, Berger CT, Puertas MC, Martinez-Picado J, Rolland M, Farfan M, Szinger JJ, ... ... Mullins JI, et al. Definition of the viral targets of protective HIV-1-specific T cell responses. Journal of Translational Medicine. 9: 208. PMID 22152067 DOI: 10.1186/1479-5876-9-208  0.538
2011 Smith RA, Raugi DN, Kiviat NB, Hawes SE, Mullins JI, Sow PS, Gottlieb GS. Phenotypic susceptibility of HIV-2 to raltegravir: integrase mutations Q148R and N155H confer raltegravir resistance. Aids (London, England). 25: 2235-41. PMID 21971360 DOI: 10.1097/Qad.0B013E32834D8E52  0.525
2011 Gottlieb GS, Smith RA, Dia Badiane NM, Ba S, Hawes SE, Toure M, Starling AK, Traore F, Sall F, Cherne SL, Stern J, Wong KG, Lu P, Kim M, Raugi DN, ... ... Mullins JI, et al. HIV-2 integrase variation in integrase inhibitor-naïve adults in Senegal, West Africa. Plos One. 6: e22204. PMID 21765953 DOI: 10.1371/Journal.Pone.0022204  0.527
2011 Nikolova M, Carriere M, Jenabian MA, Limou S, Younas M, Kök A, Huë S, Seddiki N, Hulin A, Delaneau O, Schuitemaker H, Herbeck JT, Mullins JI, Muhtarova M, Bensussan A, et al. CD39/adenosine pathway is involved in AIDS progression. Plos Pathogens. 7: e1002110. PMID 21750674 DOI: 10.1371/Journal.Ppat.1002110  0.384
2011 Chen RT, Hu DJ, Dunne E, Shaw M, Mullins JI, Rerks-Ngarm S. Preparing for the availability of a partially effective HIV vaccine: some lessons from other licensed vaccines. Vaccine. 29: 6072-8. PMID 21745523 DOI: 10.1016/J.Vaccine.2011.07.015  0.43
2011 Herbeck JT, Rolland M, Liu Y, McLaughlin S, McNevin J, Zhao H, Wong K, Stoddard JN, Raugi D, Sorensen S, Genowati I, Birditt B, McKay A, Diem K, Maust BS, ... ... Mullins JI, et al. Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes. Journal of Virology. 85: 7523-34. PMID 21593162 DOI: 10.1128/Jvi.02697-10  0.561
2011 Baeten JM, Kahle E, Lingappa JR, Coombs RW, Delany-Moretlwe S, Nakku-Joloba E, Mugo NR, Wald A, Corey L, Donnell D, Campbell MS, Mullins JI, Celum C. Genital HIV-1 RNA predicts risk of heterosexual HIV-1 transmission. Science Translational Medicine. 3: 77ra29. PMID 21471433 DOI: 10.1126/Scitranslmed.3001888  0.506
2011 Rolland M, Frahm N, Nickle DC, Jojic N, Deng W, Allen TM, Brander C, Heckerman DE, Mullins JI. Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences. Plos One. 6: e17969. PMID 21464919 DOI: 10.1371/Journal.Pone.0017969  0.716
2011 Campbell MS, Mullins JI, Hughes JP, Celum C, Wong KG, Raugi DN, Sorensen S, Stoddard JN, Zhao H, Deng W, Kahle E, Panteleeff D, Baeten JM, McCutchan FE, Albert J, et al. Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial. Plos One. 6: e16986. PMID 21399681 DOI: 10.1371/Journal.Pone.0016986  0.546
2011 Rolland M, Tovanabutra S, deCamp AC, Frahm N, Gilbert PB, Sanders-Buell E, Heath L, Magaret CA, Bose M, Bradfield A, O'Sullivan A, Crossler J, Jones T, Nau M, Wong K, ... ... Mullins JI, et al. Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nature Medicine. 17: 366-71. PMID 21358627 DOI: 10.1038/Nm.2316  0.479
2011 Liu Y, McNevin JP, Holte S, McElrath MJ, Mullins JI. Dynamics of viral evolution and CTL responses in HIV-1 infection. Plos One. 6: e15639. PMID 21283794 DOI: 10.1371/Journal.Pone.0015639  0.536
2011 Mullins JI, Heath L, Hughes JP, Kicha J, Styrchak S, Wong KG, Rao U, Hansen A, Harris KS, Laurent JP, Li D, Simpson JH, Essigmann JM, Loeb LA, Parkins J. Mutation of HIV-1 genomes in a clinical population treated with the mutagenic nucleoside KP1461. Plos One. 6: e15135. PMID 21264288 DOI: 10.1371/Journal.Pone.0015135  0.472
2011 Niu L, Termini JM, Kanagavelu SK, Gupta S, Rolland MM, Kulkarni V, Pavlakis GN, Felber BK, Mullins JI, Fischl MA, Stone GW. Preclinical evaluation of HIV-1 therapeutic ex vivo dendritic cell vaccines expressing consensus Gag antigens and conserved Gag epitopes Vaccine. 29: 2110-2119. PMID 21241732 DOI: 10.1016/J.Vaccine.2010.12.131  0.52
2011 Mullins JI, Heath L, Hughes JP, Li D, Essigmann JM, Harris KS, Simpson JH, Laurent J, Loeb LA, Parkins J. Mutations based on viral decay acceleration in the HIV-1 genomes of a clinical population treated with the mutagenic nucleoside KP1461 Retrovirology. 8. DOI: 10.1186/1742-4690-8-S2-P84  0.415
2011 Herbeck JT, Rolland M, Liu Y, McLaughlin S, McNevin J, Diem K, Collier AC, McElrath MJ, Mullins JI. 175 HIV-1 Evolution in Primary Infection is Affected by Stochastic Followed by Selective Processes Jaids Journal of Acquired Immune Deficiency Syndromes. 56: 73. DOI: 10.1097/01.Qai.0000397358.45921.C4  0.499
2010 Curlin ME, Zioni R, Hawes SE, Liu Y, Deng W, Gottlieb GS, Zhu T, Mullins JI. HIV-1 envelope subregion length variation during disease progression. Plos Pathogens. 6: e1001228. PMID 21187897 DOI: 10.1371/Journal.Ppat.1001228  0.531
2010 Huang XL, Fan Z, Borowski L, Mailliard RB, Rolland M, Mullins JI, Day RD, Rinaldo CR. Dendritic cells reveal a broad range of MHC class I epitopes for HIV-1 in persons with suppressed viral load on antiretroviral therapy. Plos One. 5: e12936. PMID 20886040 DOI: 10.1371/Journal.Pone.0012936  0.492
2010 Heath L, Frenkel LM, Foley BT, Mullins JI. Comment on "The origins of sexually transmitted HIV among men who have sex with men". Science Translational Medicine. 2: 50le1; author reply . PMID 20861507 DOI: 10.1126/Scitranslmed.3001416  0.537
2010 Lingappa JR, Hughes JP, Wang RS, Baeten JM, Celum C, Gray GE, Stevens WS, Donnell D, Campbell MS, Farquhar C, Essex M, Mullins JI, Coombs RW, Rees H, Corey L, et al. Estimating the impact of plasma HIV-1 RNA reductions on heterosexual HIV-1 transmission risk. Plos One. 5: e12598. PMID 20856886 DOI: 10.1371/Journal.Pone.0012598  0.512
2010 Boutwell CL, Rolland MM, Herbeck JT, Mullins JI, Allen TM. Viral evolution and escape during acute HIV-1 infection. The Journal of Infectious Diseases. 202: S309-14. PMID 20846038 DOI: 10.1086/655653  0.58
2010 Rolland M, Carlson JM, Manocheewa S, Swain JV, Lanxon-Cookson E, Deng W, Rousseau CM, Raugi DN, Learn GH, Maust BS, Coovadia H, Ndung'u T, Goulder PJ, Walker BD, Brander C, ... ... Mullins JI, et al. Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics. Plos One. 5. PMID 20824187 DOI: 10.1371/Journal.Pone.0012463  0.53
2010 Gantt S, Carlsson J, Heath L, Bull ME, Shetty AK, Mutsvangwa J, Musingwini G, Woelk G, Zijenah LS, Katzenstein DA, Mullins JI, Frenkel LM. Genetic analyses of HIV-1 env sequences demonstrate limited compartmentalization in breast milk and suggest viral replication within the breast that increases with mastitis. Journal of Virology. 84: 10812-9. PMID 20660189 DOI: 10.1128/Jvi.00543-10  0.49
2010 Deng W, Maust BS, Nickle DC, Learn GH, Liu Y, Heath L, Kosakovsky Pond SL, Mullins JI. DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites. Biotechniques. 48: 405-8. PMID 20569214 DOI: 10.2144/000113370  0.584
2010 Heath L, Conway S, Jones L, Semrau K, Nakamura K, Walter J, Decker WD, Hong J, Chen T, Heil M, Sinkala M, Kankasa C, Thea DM, Kuhn L, Mullins JI, et al. Restriction of HIV-1 genotypes in breast milk does not account for the population transmission genetic bottleneck that occurs following transmission. Plos One. 5: e10213. PMID 20422033 DOI: 10.1371/Journal.Pone.0010213  0.419
2010 Nakamura KJ, Gach JS, Jones L, Semrau K, Walter J, Bibollet-Ruche F, Decker JM, Heath L, Decker WD, Sinkala M, Kankasa C, Thea D, Mullins J, Kuhn L, Zwick MB, et al. 4E10-resistant HIV-1 isolated from four subjects with rare membrane-proximal external region polymorphisms. Plos One. 5: e9786. PMID 20352106 DOI: 10.1371/Journal.Pone.0009786  0.414
2010 Dinges WL, Richardt J, Friedrich D, Jalbert E, Liu Y, Stevens CE, Maenza J, Collier AC, Geraghty DE, Smith J, Moodie Z, Mullins JI, McElrath MJ, Horton H. Virus-specific CD8+ T-cell responses better define HIV disease progression than HLA genotype. Journal of Virology. 84: 4461-8. PMID 20147397 DOI: 10.1128/Jvi.02438-09  0.503
2010 Celum C, Wald A, Lingappa JR, Magaret AS, Wang RS, Mugo N, Mujugira A, Baeten JM, Mullins JI, Hughes JP, Bukusi EA, Cohen CR, Katabira E, Ronald A, Kiarie J, et al. Acyclovir and transmission of HIV-1 from persons infected with HIV-1 and HSV-2. The New England Journal of Medicine. 362: 427-39. PMID 20089951 DOI: 10.1056/Nejmoa0904849  0.567
2010 Herbeck JT, Gottlieb GS, Winkler CA, Nelson GW, An P, Maust BS, Wong KG, Troyer JL, Goedert JJ, Kessing BD, Detels R, Wolinsky SM, Martinson J, Buchbinder S, Kirk GD, ... ... Mullins JI, et al. Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. The Journal of Infectious Diseases. 201: 618-26. PMID 20064070 DOI: 10.1086/649842  0.504
2010 Poon AF, Swenson LC, Dong WW, Deng W, Kosakovsky Pond SL, Brumme ZL, Mullins JI, Richman DD, Harrigan PR, Frost SD. Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1. Molecular Biology and Evolution. 27: 819-32. PMID 19955476 DOI: 10.1093/Molbev/Msp289  0.488
2009 Liu Y, McNevin J, Rolland M, Zhao H, Deng W, Maenza J, Stevens CE, Collier AC, McElrath MJ, Mullins JI. Conserved HIV-1 epitopes continuously elicit subdominant cytotoxic T-lymphocyte responses. The Journal of Infectious Diseases. 200: 1825-33. PMID 19909083 DOI: 10.1086/648401  0.568
2009 Bull M, Learn G, Genowati I, McKernan J, Hitti J, Lockhart D, Tapia K, Holte S, Dragavon J, Coombs R, Mullins J, Frenkel L. Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations. Plos One. 4: e7122. PMID 19771165 DOI: 10.1371/Journal.Pone.0007122  0.552
2009 Heath L, Fox A, McClure J, Diem K, van 't Wout AB, Zhao H, Park DR, Schouten JT, Twigg HL, Corey L, Mullins JI, Mittler JE. Evidence for limited genetic compartmentalization of HIV-1 between lung and blood. Plos One. 4: e6949. PMID 19759830 DOI: 10.1371/Journal.Pone.0006949  0.429
2009 Malhotra U, Nolin J, Horton H, Li F, Corey L, Mullins JI, McElrath MJ. Functional properties and epitope characteristics of T-cells recognizing natural HIV-1 variants Vaccine. 27: 6678-6687. PMID 19747576 DOI: 10.1016/J.Vaccine.2009.08.093  0.324
2009 Herbeck JT, Gottlieb GS, Wong K, Detels R, Phair JP, Rinaldo CR, Jacobson LP, Margolick JB, Mullins JI. Fidelity of SNP array genotyping using Epstein Barr virus-transformed B-lymphocyte cell lines: implications for genome-wide association studies. Plos One. 4: e6915. PMID 19730697 DOI: 10.1371/Journal.Pone.0006915  0.329
2009 Liu Y, Woodward A, Zhu H, Andrus T, McNevin J, Lee J, Mullins JI, Corey L, McElrath MJ, Zhu T. Preinfection human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes failed to prevent HIV type 1 infection from strains genetically unrelated to viruses in long-term exposed partners. Journal of Virology. 83: 10821-9. PMID 19706711 DOI: 10.1128/Jvi.00839-09  0.601
2009 Campbell MS, Gottlieb GS, Hawes SE, Nickle DC, Wong KG, Deng W, Lampinen TM, Kiviat NB, Mullins JI. HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk? Plos One. 4: e5690. PMID 19479055 DOI: 10.1371/Journal.Pone.0005690  0.708
2009 Wagner TA, Tobin NH, McKernan JL, Xu M, Melvin AJ, Mohan KM, Learn GH, Mullins JI, Frenkel LM. Increased mutations in Env and Pol suggest greater HIV-1 replication in sputum-derived viruses compared with blood-derived viruses. Aids (London, England). 23: 923-8. PMID 19349849 DOI: 10.1097/Qad.0B013E328329F964  0.536
2009 Troyer RM, McNevin J, Liu Y, Zhang SC, Krizan RW, Abraha A, Tebit DM, Zhao H, Avila S, Lobritz MA, McElrath MJ, Le Gall S, Mullins JI, Arts EJ. Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response. Plos Pathogens. 5: e1000365. PMID 19343217 DOI: 10.1371/Journal.Ppat.1000365  0.476
2009 Bull ME, Learn GH, McElhone S, Hitti J, Lockhart D, Holte S, Dragavon J, Coombs RW, Mullins JI, Frenkel LM. Monotypic human immunodeficiency virus type 1 genotypes across the uterine cervix and in blood suggest proliferation of cells with provirus. Journal of Virology. 83: 6020-8. PMID 19339344 DOI: 10.1128/Jvi.02664-08  0.55
2009 Rousseau CM, Lockhart DW, Listgarten J, Maley SN, Kadie C, Learn GH, Nickle DC, Heckerman DE, Deng W, Brander C, Ndung'u T, Coovadia H, Goulder PJ, Korber BT, Walker BD, ... Mullins JI, et al. Rare HLA drive additional HIV evolution compared to more frequent alleles. Aids Research and Human Retroviruses. 25: 297-303. PMID 19327049 DOI: 10.1089/Aid.2008.0208  0.668
2009 Gottlieb GS, Badiane NM, Hawes SE, Fortes L, Toure M, Ndour CT, Starling AK, Traore F, Sall F, Wong KG, Cherne SL, Anderson DJ, Dye SA, Smith RA, Mullins JI, et al. Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resouce-limited West Africa. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 48: 476-83. PMID 19143530 DOI: 10.1086/596504  0.535
2009 Mainetti L, Mullins J, Scarlatti G. P04-20. Humoral immune response in acute HIV-1 infection Retrovirology. 6: 48. DOI: 10.1186/1742-4690-6-S3-P48  0.55
2009 Rolland MM, Swain VJ, Lanxon-Cookson E, Rao U, Henry KR, Arts EJ, Nickle DC, Mullins JI. P17-14. Fitness-informed HIV-1 Gag-p24 vaccine design Retrovirology. 6. DOI: 10.1186/1742-4690-6-S3-P296  0.653
2009 Mothe B, Llano A, Ibarrondo J, Miranda C, Rolland M, Frahm N, Khatri A, Heckerman D, Mullins J, Brander C. P12-09. Immune responses in controlled and uncontrolled HIV infection to a designed HIV immunogen sequence focused on conserved regions of the viral genome Retrovirology. 6: P175. DOI: 10.1186/1742-4690-6-S3-P175  0.419
2009 Honeyborne I, Leslie A, Crawford H, Rousseau CM, Mullins JI, Walker BD, Goulder P, Prado JG. P09-18. Cw 0303/0304 HIV specific CTL response toward GagYL9 select for HIV escape variants with low fitness that is compensated by intra-codon variation Retrovirology. 6. DOI: 10.1186/1742-4690-6-S3-P131  0.527
2009 Herbeck JT, Rolland MT, Deng WC, Collier AC, Mullins JI. P07-06. HIV-1 transmission and early evolution: Whole genome analysis Retrovirology. 6. DOI: 10.1186/1742-4690-6-S3-P104  0.471
2009 Rolland M, Tovanabutra S, Gilbert PB, Sanders-Buell E, Heath L, deCamp AC, Magaret CC, Bose M, Bradfield A, O'Sullivan A, Crossler J, Deng W, Zhao H, Wong K, Raugi DN, ... ... Mullins JI, et al. OA06-06 LB. Evidence of vaccine-induced changes in breakthrough HIV-1 strains from the Step trial Retrovirology. 6: O42. DOI: 10.1186/1742-4690-6-S3-O42  0.366
2009 Lingappa J, Hughes J, Donnel D, Baeten J, Mullins J, Campbell M, Gray G, Essex M, Farquhar C, Rees H, Wald A, Corey L, Celum C. OA01-06 LB. HIV-1 plasma RNA and risk of HIV-1 transmission Retrovirology. 6: O12. DOI: 10.1186/1742-4690-6-S3-O12  0.508
2008 Mullins JI, Rolland M, Allen TM. Viral evolution and escape during primary human immunodeficiency virus-1 infection: implications for vaccine design. Current Opinion in Hiv and Aids. 3: 60-6. PMID 19372945 DOI: 10.1097/Coh.0B013E3282F233D9  0.435
2008 Carlson JM, Brumme ZL, Rousseau CM, Brumme CJ, Matthews P, Kadie C, Mullins JI, Walker BD, Harrigan PR, Goulder PJ, Heckerman D. Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. Plos Computational Biology. 4: e1000225. PMID 19023406 DOI: 10.1371/Journal.Pcbi.1000225  0.55
2008 Coetzer M, Nedellec R, Salkowitz J, McLaughlin S, Liu Y, Heath L, Mullins JI, Mosier DE. Evolution of CCR5 use before and during coreceptor switching. Journal of Virology. 82: 11758-66. PMID 18815295 DOI: 10.1128/Jvi.01141-08  0.5
2008 Matthews PC, Prendergast A, Leslie A, Crawford H, Payne R, Rousseau C, Rolland M, Honeyborne I, Carlson J, Kadie C, Brander C, Bishop K, Mlotshwa N, Mullins JI, Coovadia H, et al. Central role of reverting mutations in HLA associations with human immunodeficiency virus set point. Journal of Virology. 82: 8548-59. PMID 18596105 DOI: 10.1128/Jvi.00580-08  0.525
2008 Nickle DC, Jojic N, Heckerman D, Jojic V, Kirovski D, Rolland M, Kosakovsky Pond S, Mullins JI. Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al. Plos Computational Biology. 4: e25. PMID 18463692 DOI: 10.1371/Journal.Pcbi.0040025  0.621
2008 Rousseau CM, Daniels MG, Carlson JM, Kadie C, Crawford H, Prendergast A, Matthews P, Payne R, Rolland M, Raugi DN, Maust BS, Learn GH, Nickle DC, Coovadia H, Ndung'u T, ... ... Mullins JI, et al. HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load. Journal of Virology. 82: 6434-46. PMID 18434400 DOI: 10.1128/Jvi.02455-07  0.698
2008 Diem K, Nickle DC, Motoshige A, Fox A, Ross S, Mullins JI, Corey L, Coombs RW, Krieger JN. Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV). Aids Research and Human Retroviruses. 24: 561-71. PMID 18426336 DOI: 10.1089/Aid.2007.0115  0.719
2008 Gottlieb GS, Heath L, Nickle DC, Wong KG, Leach SE, Jacobs B, Gezahegne S, van 't Wout AB, Jacobson LP, Margolick JB, Mullins JI. HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study. The Journal of Infectious Diseases. 197: 1011-5. PMID 18419538 DOI: 10.1086/529206  0.745
2008 Liu Y, Curlin ME, Diem K, Zhao H, Ghosh AK, Zhu H, Woodward AS, Maenza J, Stevens CE, Stekler J, Collier AC, Genowati I, Deng W, Zioni R, Corey L, ... ... Mullins JI, et al. Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses. Virology. 374: 229-33. PMID 18314154 DOI: 10.1016/J.Virol.2008.01.029  0.552
2008 Frahm N, Nickle DC, Linde CH, Cohen DE, Zuñiga R, Lucchetti A, Roach T, Walker BD, Allen TM, Korber BT, Mullins JI, Brander C. Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity. Aids (London, England). 22: 447-56. PMID 18301057 DOI: 10.1097/Qad.0B013E3282F42412  0.688
2008 Ngumbela KC, Day CL, Mncube Z, Nair K, Ramduth D, Thobakgale C, Moodley E, Reddy S, De Pierres C, Mkhwanazi N, Bishop K, Van Der Stok M, Ismail N, Honeyborne I, Crawford H, ... ... Mullins J, et al. Targeting of a CD8 T cell env epitope presented by HLA-B*5802 is associated with markers of HIV disease progression and lack of selection pressure Aids Research and Human Retroviruses. 24: 72-82. PMID 18275350 DOI: 10.1089/Aid.2007.0124  0.688
2008 Chun TW, Nickle DC, Justement JS, Meyers JH, Roby G, Hallahan CW, Kottilil S, Moir S, Mican JM, Mullins JI, Ward DJ, Kovacs JA, Mannon PJ, Fauci AS. Persistence of HIV in gut-associated lymphoid tissue despite long-term antiretroviral therapy. The Journal of Infectious Diseases. 197: 714-20. PMID 18260759 DOI: 10.1086/527324  0.743
2008 Herbeck JT, Gottlieb GS, Li X, Hu Z, Detels R, Phair J, Rinaldo C, Jacobson LP, Margolick JB, Mullins JI. Lack of evidence for changing virulence of HIV-1 in North America. Plos One. 3: e1525. PMID 18253479 DOI: 10.1371/Journal.Pone.0001525  0.503
2008 Rolland M, Heckerman D, Deng W, Rousseau CM, Coovadia H, Bishop K, Goulder PJ, Walker BD, Brander C, Mullins JI. Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads. Plos One. 3: e1424. PMID 18183304 DOI: 10.1371/Journal.Pone.0001424  0.54
2008 Xu Y, Zhu H, Wilcox CK, van't Wout A, Andrus T, Llewellyn N, Stamatatos L, Mullins JI, Corey L, Zhu T. Blood monocytes harbor HIV type 1 strains with diversified phenotypes including macrophage-specific CCR5 virus. The Journal of Infectious Diseases. 197: 309-18. PMID 18173363 DOI: 10.1086/524847  0.552
2008 Cao J, McNevin J, McSweyn M, Liu Y, Mullins JI, McElrath MJ. Novel cytotoxic T-lymphocyte escape mutation by a three-amino-acid insertion in the human immunodeficiency virus type 1 p6Pol and p6Gag late domain associated with drug resistance Journal of Virology. 82: 495-502. PMID 17942528 DOI: 10.1128/Jvi.01096-07  0.545
2008 de Oliveira CF, Diaz RS, Harmache A, Frenkel LM, Gupta P, Learn GH, Mullins JI, Busch MP. Passive transfer of HIV-1 antibodies and drug resistant virus during a health care worker accident: Implications for HCW post-exposure management American Journal of Infectious Diseases. 4: 244-256. DOI: 10.3844/Ajidsp.2008.244.256  0.511
2008 Nickle DC, Jojic N, Heckerman D, Jojic V, Kirovski D, Rolland M, Kosakovsky Pond S, Mullins JI. Correction: Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al Plos Computational Biology. 4. DOI: 10.1371/Annotation/Da2Fae86-8F92-4D32-Aefe-A30A1De7A8F8  0.553
2008 Crawford H, Prado JG, Leslie A, Hué S, Honeyborne I, Reddy S, Van Der Stok M, Mncube Z, Brander C, Rousseau C, Mullins JI, Kaslow R, Goepfert P, Allen S, Hunter E, et al. Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted gag epitope in chronic human immunodeficiency virus type 1 infection (Journal of Virology (2007) 81, 15, (8346-8351)) Journal of Virology. 82: 3161. DOI: 10.1128/Jvi.02750-07  0.371
2008 Mullins JI, Rolland M, Allen TM. Viral evolution and escape during primary human immunodeficiency virus-1 infection: Implications for vaccine design Current Opinion in Hiv and Aids. 3: 60-66. DOI: 10.1097/COH.0b013e3282f233d9  0.339
2007 Rolland M, Nickle DC, Mullins JI. HIV-1 group M conserved elements vaccine. Plos Pathogens. 3: e157. PMID 18052528 DOI: 10.1371/Journal.Ppat.0030157  0.728
2007 Rolland M, Nickle DC, Deng W, Frahm N, Brander C, Learn GH, Heckerman D, Jojic N, Jojic V, Walker BD, Mullins JI. Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins. Plos One. 2: e823. PMID 17786195 DOI: 10.1371/Journal.Pone.0000823  0.736
2007 Liu Y, McNevin J, Zhao H, Tebit DM, Troyer RM, McSweyn M, Ghosh AK, Shriner D, Arts EJ, McElrath MJ, Mullins JI. Evolution of human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitopes: fitness-balanced escape. Journal of Virology. 81: 12179-88. PMID 17728222 DOI: 10.1128/Jvi.01277-07  0.684
2007 Rolland M, Brander C, Nickle DC, Herbeck JT, Gottlieb GS, Campbell MS, Maust BS, Mullins JI. HIV-1 over time: fitness loss or robustness gain? Nature Reviews. Microbiology. 5: C1. PMID 17703224 DOI: 10.1038/Nrmicro1594-C1  0.692
2007 Gottlieb GS, Nickle DC, Jensen MA, Wong KG, Kaslow RA, Shepherd JC, Margolick JB, Mullins JI. HIV type 1 superinfection with a dual-tropic virus and rapid progression to AIDS: a case report. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 45: 501-9. PMID 17638203 DOI: 10.1086/520024  0.748
2007 Deng W, Nickle DC, Learn GH, Maust B, Mullins JI. ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics (Oxford, England). 23: 2334-6. PMID 17586542 DOI: 10.1093/Bioinformatics/Btm331  0.559
2007 Nickle DC, Heath L, Jensen MA, Gilbert PB, Mullins JI, Kosakovsky Pond SL. HIV-specific probabilistic models of protein evolution. Plos One. 2: e503. PMID 17551583 DOI: 10.1371/Journal.Pone.0000503  0.688
2007 Rolland M, Jensen MA, Nickle DC, Yan J, Learn GH, Heath L, Weiner D, Mullins JI. Reconstruction and function of ancestral center-of-tree human immunodeficiency virus type 1 proteins. Journal of Virology. 81: 8507-14. PMID 17537854 DOI: 10.1128/Jvi.02683-06  0.731
2007 Herbeck JT, Lyagoba F, Moore SW, Shindo N, Biryahwaho B, Kaleebu P, Mullins JI. Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda. Aids Research and Human Retroviruses. 23: 755-60. PMID 17531003 DOI: 10.1089/Aid.2006.0237.A  0.379
2007 Crawford H, Prado JG, Leslie A, Hué S, Honeyborne I, Reddy S, van der Stok M, Mncube Z, Brander C, Rousseau C, Mullins JI, Kaslow R, Goepfert P, Allen S, Hunter E, et al. Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection. Journal of Virology. 81: 8346-51. PMID 17507468 DOI: 10.1128/Jvi.00465-07  0.444
2007 Chun TW, Justement JS, Moir S, Hallahan CW, Maenza J, Mullins JI, Collier AC, Corey L, Fauci AS. Decay of the HIV reservoir in patients receiving antiretroviral therapy for extended periods: Implications for eradication of virus Journal of Infectious Diseases. 195: 1762-1764. PMID 17492591 DOI: 10.1086/518250  0.517
2007 Nickle DC, Rolland M, Jensen MA, Pond SL, Deng W, Seligman M, Heckerman D, Mullins JI, Jojic N. Coping with viral diversity in HIV vaccine design. Plos Computational Biology. 3: e75. PMID 17465674 DOI: 10.1371/Journal.Pcbi.0030075  0.744
2007 Bhattacharya T, Daniels M, Heckerman D, Foley B, Frahm N, Kadie C, Carlson J, Yusim K, McMahon B, Gaschen B, Mallal S, Mullins JI, Nickle DC, Herbeck J, Rousseau C, et al. Founder effects in the assessment of HIV polymorphisms and HLA allele associations. Science (New York, N.Y.). 315: 1583-6. PMID 17363674 DOI: 10.1126/Science.1131528  0.682
2007 Malhotra U, Li F, Nolin J, Allison M, Zhao H, Mullins JI, Self S, McElrath MJ. Enhanced detection of human immunodeficiency virus type 1 (HIV-1) Nef-specific T cells recognizing multiple variants in early HIV-1 infection. Journal of Virology. 81: 5225-37. PMID 17329342 DOI: 10.1128/Jvi.02564-06  0.517
2007 Gottlieb GS, Hawes SE, Nickle DC, Herbeck JT, Kiviat NB, Mullins JI, Sow PS. Presenting plasma HIV RNA level and rate of CD4 T-cell decline. Jama. 297: 805; author reply 80. PMID 17327518 DOI: 10.1001/Jama.297.8.805-A  0.659
2007 Rousseau CM, Learn GH, Bhattacharya T, Nickle DC, Heckerman D, Chetty S, Brander C, Goulder PJ, Walker BD, Kiepiela P, Korber BT, Mullins JI. Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections. Journal of Virology. 81: 4492-500. PMID 17314156 DOI: 10.1128/Jvi.02050-06  0.7
2007 Honeyborne I, Prendergast A, Pereyra F, Leslie A, Crawford H, Payne R, Reddy S, Bishop K, Moodley E, Nair K, van der Stok M, McCarthy N, Rousseau CM, Addo M, Mullins JI, et al. Control of human immunodeficiency virus type 1 is associated with HLA-B*13 and targeting of multiple gag-specific CD8+ T-cell epitopes. Journal of Virology. 81: 3667-72. PMID 17251285 DOI: 10.1128/Jvi.02689-06  0.464
2007 Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, Moodley E, Reddy S, de Pierres C, Mncube Z, Mkhwanazi N, Bishop K, van der Stok M, Nair K, Khan N, Crawford H, ... ... Mullins JI, et al. CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nature Medicine. 13: 46-53. PMID 17173051 DOI: 10.1038/Nm1520  0.727
2007 Malhotra U, Nolin J, Mullins JI, McElrath MJ. Comprehensive epitope analysis of cross-clade Gag-specific T-cell responses in individuals with early HIV-1 infection in the US epidemic Vaccine. 25: 381-390. PMID 17112643 DOI: 10.1016/J.Vaccine.2006.07.045  0.405
2006 Ross HA, Nickle DC, Liu Y, Heath L, Jensen MA, Rodrigo AG, Mullins JI. Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes. Evolutionary Bioinformatics Online. 2: 53-76. PMID 19455202 DOI: 10.4137/Ebo.S0  0.64
2006 Leslie A, Price DA, Mkhize P, Bishop K, Rathod A, Day C, Crawford H, Honeyborne I, Asher TE, Luzzi G, Edwards A, Rousseau CM, Rosseau CM, Mullins JI, Tudor-Williams G, et al. Differential selection pressure exerted on HIV by CTL targeting identical epitopes but restricted by distinct HLA alleles from the same HLA supertype. Journal of Immunology (Baltimore, Md. : 1950). 177: 4699-708. PMID 16982909 DOI: 10.4049/Jimmunol.177.7.4699  0.377
2006 Liu Y, McNevin J, Cao J, Zhao H, Genowati I, Wong K, McLaughlin S, McSweyn MD, Diem K, Stevens CE, Maenza J, He H, Nickle DC, Shriner D, Holte SE, ... ... Mullins JI, et al. Selection on the human immunodeficiency virus type 1 proteome following primary infection. Journal of Virology. 80: 9519-29. PMID 16973556 DOI: 10.1128/Jvi.00575-06  0.786
2006 Shriner D, Liu Y, Nickle DC, Mullins JI. Evolution of intrahost HIV-1 genetic diversity during chronic infection. Evolution; International Journal of Organic Evolution. 60: 1165-76. PMID 16892967 DOI: 10.1554/05-473.1  0.796
2006 Rousseau CM, Birditt BA, McKay AR, Stoddard JN, Lee TC, McLaughlin S, Moore SW, Shindo N, Learn GH, Korber BT, Brander C, Goulder PJ, Kiepiela P, Walker BD, Mullins JI. Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes. Journal of Virological Methods. 136: 118-25. PMID 16701907 DOI: 10.1016/J.Jviromet.2006.04.009  0.535
2006 Jensen MA, Coetzer M, van 't Wout AB, Morris L, Mullins JI. A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences. Journal of Virology. 80: 4698-704. PMID 16641263 DOI: 10.1128/Jvi.80.10.4698-4704.2006  0.444
2006 Mullins JI, Jensen MA. Evolutionary dynamics of HIV-1 and the control of AIDS. Current Topics in Microbiology and Immunology. 299: 171-92. PMID 16568899 DOI: 10.1007/3-540-26397-7_6  0.565
2006 Holte SE, Melvin AJ, Mullins JI, Tobin NH, Frenkel LM. Density-dependent decay in HIV-1 dynamics. Journal of Acquired Immune Deficiency Syndromes (1999). 41: 266-76. PMID 16540927 DOI: 10.1097/01.Qai.0000199233.69457.E4  0.437
2006 Martinez-Picado J, Prado JG, Fry EE, Pfafferott K, Leslie A, Chetty S, Thobakgale C, Honeyborne I, Crawford H, Matthews P, Pillay T, Rousseau C, Mullins JI, Brander C, Walker BD, et al. Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. Journal of Virology. 80: 3617-23. PMID 16537629 DOI: 10.1128/Jvi.80.7.3617-3623.2006  0.498
2006 Herbeck JT, Nickle DC, Learn GH, Gottlieb GS, Curlin ME, Heath L, Mullins JI. Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host. Journal of Virology. 80: 1637-44. PMID 16439520 DOI: 10.1128/Jvi.80.4.1637-1644.2006  0.746
2006 Iversen AK, Stewart-Jones G, Learn GH, Christie N, Sylvester-Hviid C, Armitage AE, Kaul R, Beattie T, Lee JK, Li Y, Chotiyarnwong P, Dong T, Xu X, Luscher MA, MacDonald K, ... ... Mullins JI, et al. Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope. Nature Immunology. 7: 179-89. PMID 16388312 DOI: 10.1038/Ni1298  0.42
2006 Liu Y, Mullins JI, Mittler JE. Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection. Virology. 347: 140-6. PMID 16387340 DOI: 10.1016/J.Virol.2005.11.036  0.475
2006 Frahm N, Kiepiela P, Adams S, Linde CH, Hewitt HS, Sango K, Feeney ME, Addo MM, Lichterfeld M, Lahaie MP, Pae E, Wurcel AG, Roach T, St John MA, Altfeld M, ... ... Mullins JI, et al. Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes. Nature Immunology. 7: 173-8. PMID 16369537 DOI: 10.1038/Ni1281  0.408
2006 Leslie A, Price DA, Mkhize P, Bishop K, Rathod A, Day C, Crawford H, Honeyborne I, Asher TE, Luzzi G, Edwards A, Rosseau CM, Mullins JI, Tudor-Williams G, Novelli V, et al. Differential selection pressure exerted on HIV by CTL targeting identical epitopes but restricted by distinct HLA alleles from the same HLA supertype The Journal of Immunology. 177: 8878.2-8878. DOI: 10.4049/jimmunol.177.12.8878-a  0.308
2005 Shepherd BE, Rossini AJ, Soto RJ, De Rivera IL, Mullins JI. Sampling designs for HIV molecular epidemiology with application to Honduras Aids Research and Human Retroviruses. 21: 907-914. PMID 16386105 DOI: 10.1089/Aid.2005.21.907  0.399
2005 Chun TW, Nickle DC, Justement JS, Large D, Semerjian A, Curlin ME, O'Shea MA, Hallahan CW, Daucher M, Ward DJ, Moir S, Mullins JI, Kovacs C, Fauci AS. HIV-infected individuals receiving effective antiviral therapy for extended periods of time continually replenish their viral reservoir. The Journal of Clinical Investigation. 115: 3250-5. PMID 16276421 DOI: 10.1172/Jci26197  0.677
2005 Doria-Rose NA, Learn GH, Rodrigo AG, Nickle DC, Li F, Mahalanabis M, Hensel MT, McLaughlin S, Edmonson PF, Montefiori D, Barnett SW, Haigwood NL, Mullins JI. Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating subtype B envelope. Journal of Virology. 79: 11214-24. PMID 16103173 DOI: 10.1128/Jvi.79.17.11214-11224.2005  0.743
2005 van 't Wout AB, Swain JV, Schindler M, Rao U, Pathmajeyan MS, Mullins JI, Kirchhoff F. Nef induces multiple genes involved in cholesterol synthesis and uptake in human immunodeficiency virus type 1-infected T cells. Journal of Virology. 79: 10053-8. PMID 16014965 DOI: 10.1128/Jvi.79.15.10053-10058.2005  0.52
2005 Tobin NH, Learn GH, Holte SE, Wang Y, Melvin AJ, McKernan JL, Pawluk DM, Mohan KM, Lewis PF, Mullins JI, Frenkel LM. Evidence that low-level viremias during effective highly active antiretroviral therapy result from two processes: expression of archival virus and replication of virus. Journal of Virology. 79: 9625-34. PMID 16014925 DOI: 10.1128/Jvi.79.15.9625-9634.2005  0.53
2005 Troyer RM, Collins KR, Abraha A, Fraundorf E, Moore DM, Krizan RW, Toossi Z, Colebunders RL, Jensen MA, Mullins JI, Vanham G, Arts EJ. Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progression. Journal of Virology. 79: 9006-18. PMID 15994794 DOI: 10.1128/Jvi.79.14.9006-9018.2005  0.57
2005 Iversen AKN, Learn GH, Skinhøf P, Mullins JI, McMichael AJ, Rambaut A. Preferential detection of HIV subtype C′ over subtype A in cervical cells from a dually infected woman [2] Aids. 19: 990-993. PMID 15905685 DOI: 10.1097/01.Aids.0000171418.91786.Ad  0.507
2005 Leslie A, Kavanagh D, Honeyborne I, Pfafferott K, Edwards C, Pillay T, Hilton L, Thobakgale C, Ramduth D, Draenert R, Le Gall S, Luzzi G, Edwards A, Brander C, Sewell AK, ... ... Mullins J, et al. Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA. The Journal of Experimental Medicine. 201: 891-902. PMID 15781581 DOI: 10.1084/Jem.20041455  0.505
2004 Kiepiela P, Leslie AJ, Honeyborne I, Ramduth D, Thobakgale C, Chetty S, Rathnavalu P, Moore C, Pfafferott KJ, Hilton L, Zimbwa P, Moore S, Allen T, Brander C, Addo MM, ... ... Mullins J, et al. Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA. Nature. 432: 769-75. PMID 15592417 DOI: 10.1038/Nature03113  0.496
2004 Curlin ME, Gottlieb GS, Hawes SE, Sow PS, Ndoye I, Critchlow CW, Kiviat NB, Mullins JI. No evidence for recombination between HIV type 1 and HIV type 2 within the envelope region in dually seropositive individuals from Senegal. Aids Research and Human Retroviruses. 20: 958-63. PMID 15585083 DOI: 10.1089/Aid.2004.20.958  0.55
2004 Iversen AK, Attermann J, Gerstoft J, Fugger L, Mullins JI, Skinhøj P. Longitudinal and cross-sectional studies of HIV-1 RNA and DNA loads in blood and the female genital tract. European Journal of Obstetrics, Gynecology, and Reproductive Biology. 117: 227-35. PMID 15541862 DOI: 10.1016/J.Ejogrb.2004.05.016  0.466
2004 Liu Y, Nickle DC, Shriner D, Jensen MA, Learn GH, Mittler JE, Mullins JI. Molecular clock-like evolution of human immunodeficiency virus type 1. Virology. 329: 101-8. PMID 15476878 DOI: 10.1016/J.Virol.2004.08.014  0.76
2004 Shriner D, Rodrigo AG, Nickle DC, Mullins JI. Pervasive genomic recombination of HIV-1 in vivo. Genetics. 167: 1573-83. PMID 15342499 DOI: 10.1534/Genetics.103.023382  0.801
2004 Mullins JI, Nickle DC, Heath L, Rodrigo AG, Learn GH. Immunogen sequence: the fourth tier of AIDS vaccine design. Expert Review of Vaccines. 3: S151-9. PMID 15285713 DOI: 10.1586/14760584.3.4.S151  0.678
2004 Fulcher JA, Hwangbo Y, Zioni R, Nickle D, Lin X, Heath L, Mullins JI, Corey L, Zhu T. Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection. Journal of Virology. 78: 7883-93. PMID 15254161 DOI: 10.1128/Jvi.78.15.7883-7893.2004  0.7
2004 Zhu T, Hu SL, Feng F, Polacino P, Liu H, Hwangbo Y, Learn GH, Mullins JI, Corey L. Persistence of low levels of simian immunodeficiency virus in macaques that were transiently viremic by conventional testing. Virology. 323: 208-19. PMID 15193917 DOI: 10.1016/J.Virol.2004.03.004  0.423
2004 Yu XG, Addo MM, Perkins BA, Wej F, Rathod A, Geer SC, Parta M, Cohen D, Stone DR, Russell CJ, Tanzi G, Mei S, Wurcel AG, Frahm N, Lichterfeld M, ... ... Mullins JI, et al. Differences in the expressed HLA class I alleles effect the differential clustering of HIV type 1-specific T cell responses in infected Chinese and caucasians. Aids Research and Human Retroviruses. 20: 557-64. PMID 15186531 DOI: 10.1089/088922204323087813  0.555
2004 Brumme ZL, Dong WW, Yip B, Wynhoven B, Hoffman NG, Swanstrom R, Jensen MA, Mullins JI, Hogg RS, Montaner JS, Harrigan PR. Clinical and immunological impact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy. Aids (London, England). 18: F1-9. PMID 15090786 DOI: 10.1097/00002030-200403050-00001  0.507
2004 Shriner D, Shankarappa R, Jensen MA, Nickle DC, Mittler JE, Margolick JB, Mullins JI. Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection. Genetics. 166: 1155-64. PMID 15082537 DOI: 10.1534/Genetics.166.3.1155  0.774
2004 Gottlieb GS, Nickle DC, Jensen MA, Wong KG, Grobler J, Li F, Liu SL, Rademeyer C, Learn GH, Karim SS, Williamson C, Corey L, Margolick JB, Mullins JI. Dual HIV-1 infection associated with rapid disease progression. Lancet (London, England). 363: 619-22. PMID 14987889 DOI: 10.1016/S0140-6736(04)15596-7  0.738
2004 Frahm N, Korber BT, Adams CM, Szinger JJ, Draenert R, Addo MM, Feeney ME, Yusim K, Sango K, Brown NV, SenGupta D, Piechocka-Trocha A, Simonis T, Marincola FM, Wurcel AG, ... ... Mullins J, et al. Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities. Journal of Virology. 78: 2187-200. PMID 14963115 DOI: 10.1128/Jvi.78.5.2187-2200.2004  0.529
2003 Jensen MA, Li FS, van 't Wout AB, Nickle DC, Shriner D, He HX, McLaughlin S, Shankarappa R, Margolick JB, Mullins JI. Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences. Journal of Virology. 77: 13376-88. PMID 14645592 DOI: 10.1128/Jvi.77.24.13376-13388.2003  0.772
2003 Nickle DC, Shriner D, Mittler JE, Frenkel LM, Mullins JI. Importance and detection of virus reservoirs and compartments of HIV infection. Current Opinion in Microbiology. 6: 410-6. PMID 12941414 DOI: 10.1016/S1369-5274(03)00096-1  0.798
2003 Gottlieb GS, Sow PS, Hawes SE, Ndoye I, Coll-Seck AM, Curlin ME, Critchlow CW, Kiviat NB, Mullins JI. Molecular epidemiology of dual HIV-1/HIV-2 seropositive adults from Senegal, West Africa. Aids Research and Human Retroviruses. 19: 575-84. PMID 12908935 DOI: 10.1089/088922203322230941  0.558
2003 Shriner D, Nickle DC, Jensen MA, Mullins JI. Potential impact of recombination on sitewise approaches for detecting positive natural selection. Genetical Research. 81: 115-21. PMID 12872913 DOI: 10.1017/S0016672303006128  0.698
2003 Altfeld M, Addo MM, Shankarappa R, Lee PK, Allen TM, Yu XG, Rathod A, Harlow J, O'Sullivan K, Johnston MN, Goulder PJ, Mullins JI, Rosenberg ES, Brander C, Korber B, et al. Enhanced detection of human immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences. Journal of Virology. 77: 7330-40. PMID 12805431 DOI: 10.1128/Jvi.77.13.7330-7340.2003  0.57
2003 Anderson JP, Learn GH, Rodrigo AG, He X, Wang Y, Weinstock H, Kalish ML, Robbins KE, Hood L, Mullins JI. Predicting demographic group structures based on DNA sequence data. Molecular Biology and Evolution. 20: 1168-80. PMID 12777527 DOI: 10.1093/Molbev/Msg128  0.636
2003 Zhu T, Corey L, Hwangbo Y, Lee JM, Learn GH, Mullins JI, McElrath MJ. Persistence of extraordinarily low levels of genetically homogeneous human immunodeficiency virus type 1 in exposed seronegative individuals Journal of Virology. 77: 6108-6116. PMID 12743268 DOI: 10.1128/Jvi.77.11.6108-6116.2003  0.589
2003 Frenkel LM, Wang Y, Learn GH, McKernan JL, Ellis GM, Mohan KM, Holte SE, De Vange SM, Pawluk DM, Melvin AJ, Lewis PF, Heath LM, Beck IA, Mahalanabis M, Naugler WE, ... ... Mullins JI, et al. Multiple viral genetic analyses detect low-level human immunodeficiency virus type 1 replication during effective highly active antiretroviral therapy. Journal of Virology. 77: 5721-30. PMID 12719565 DOI: 10.1128/Jvi.77.10.5721-5730.2003  0.496
2003 Nickle DC, Jensen MA, Shriner D, Brodie SJ, Frenkel LM, Mittler JE, Mullins JI. Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments. Journal of Virology. 77: 5540-6. PMID 12692259 DOI: 10.1128/Jvi.77.9.5540-5546.2003  0.751
2003 Nickle DC, Jensen MA, Gottlieb GS, Shriner D, Learn GH, Rodrigo AG, Mullins JI. Consensus and ancestral state HIV vaccines. Science (New York, N.Y.). 299: 1515-8; author reply. PMID 12624248 DOI: 10.1126/Science.299.5612.1515C  0.767
2003 Dybul M, Daucher M, Jensen MA, Hallahan CW, Chun TW, Belson M, Hidalgo B, Nickle DC, Yoder C, Metcalf JA, Davey RT, Ehler L, Kress-Rock D, Nies-Kraske E, Liu S, ... Mullins JI, et al. Genetic characterization of rebounding human immunodeficiency virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy. Journal of Virology. 77: 3229-37. PMID 12584346 DOI: 10.1128/Jvi.77.5.3229-3237.2003  0.72
2003 Van 't Wout AB, Lehrman GK, Mikheeva SA, O'Keeffe GC, Katze MG, Bumgarner RE, Geiss GK, Mullins JI. Cellular gene expression upon human immunodeficiency virus type 1 infection of CD4+-T-cell lines Journal of Virology. 77: 1392-1402. PMID 12502855 DOI: 10.1128/Jvi.77.2.1392-1402.2003  0.553
2002 Learn GH, Muthui D, Brodie SJ, Zhu T, Diem K, Mullins JI, Corey L. Virus population homogenization following acute human immunodeficiency virus type 1 infection Journal of Virology. 76: 11953-11959. PMID 12414937 DOI: 10.1128/Jvi.76.23.11953-11959.2002  0.535
2002 Liu SL, Mittler JE, Nickle DC, Mulvania TM, Shriner D, Rodrigo AG, Kosloff B, He X, Corey L, Mullins JI. Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS. Journal of Virology. 76: 10674-84. PMID 12368309 DOI: 10.1128/Jvi.76.21.10674-10684.2002  0.822
2002 Malaspina A, Moir S, Nickle DC, Donoghue ET, Ogwaro KM, Ehler LA, Liu S, Mican JA, Dybul M, Chun TW, Mullins JI, Fauci AS. Human immunodeficiency virus type 1 bound to B cells: relationship to virus replicating in CD4+ T cells and circulating in plasma. Journal of Virology. 76: 8855-63. PMID 12163605 DOI: 10.1128/Jvi.76.17.8855-8863.2002  0.69
2002 Qanungo KR, Kundu SC, Mullins JI, Ghosh AK. Molecular cloning and characterization of Antheraea mylitta cytoplasmic polyhedrosis virus genome segment 9 Journal of General Virology. 83: 1483-1491. PMID 12029164 DOI: 10.1099/0022-1317-83-6-1483  0.351
2002 Gottlieb GS, Sow PS, Hawes SE, Ndoye I, Redman M, Coll-Seck AM, Faye-Niang MA, Diop A, Kuypers JM, Critchlow CW, Respess R, Mullins JI, Kiviat NB. Equal plasma viral loads predict a similar rate of CD4+ T cell decline in human immunodeficiency virus (HIV) type 1- and HIV-2-infected individuals from Senegal, West Africa. The Journal of Infectious Diseases. 185: 905-14. PMID 11920314 DOI: 10.1086/339295  0.569
2002 Zhu T, Muthui D, Holte S, Nickle D, Feng F, Brodie S, Hwangbo Y, Mullins JI, Corey L. Evidence for human immunodeficiency virus type 1 replication in vivo in CD14+ monocytes and its potential role as a source of virus in patients on highly active antiretroviral therapy Journal of Virology. 76: 707-716. PMID 11752161 DOI: 10.1128/Jvi.76.2.707-716.2002  0.73
2002 Nickle DC, Learn GH, Rain MW, Mullins JI, Mittler JE. Curiously modern DNA for a "250 million-year-old" bacterium. Journal of Molecular Evolution. 54: 134-7. PMID 11734907 DOI: 10.1007/S00239-001-0025-X  0.559
2001 Gottlieb GS, Mullins JI. Re: Follow-up study of intrahost HIV type 2 variability reveals discontinuous evolution of C2V3 sequences. Aids Research and Human Retroviruses. 17: 1563-5, 1567. PMID 11709101 DOI: 10.1089/08892220152644278  0.507
2001 Anderson JP, Rodrigo AG, Learn GH, Wang Y, Weinstock H, Kalish ML, Robbins KE, Hood L, Mullins JI. Substitution model of sequence evolution for the human immunodeficiency virus type 1 subtype B gp120 gene over the C2-V5 region. Journal of Molecular Evolution. 53: 55-62. PMID 11683323 DOI: 10.1007/S002390010192  0.458
2001 Shankarappa R, Chatterjee R, Learn GH, Neogi D, Ding M, Roy P, Ghosh A, Kingsley L, Harrison L, Mullins JI, Gupta P. Human immunodeficiency virus type 1 env sequences from Calcutta in eastern India: identification of features that distinguish subtype C sequences in India from other subtype C sequences. Journal of Virology. 75: 10479-87. PMID 11581417 DOI: 10.1128/Jvi.75.21.10479-10487.2001  0.477
2001 Holterman L, Dubbes R, Mullins J, Learn G, Niphuis H, Koornstra W, Koopman G, Kuhn E, Wade-Evans A, Rosenwirth B, Haaijman J, Heeney J. Characteristics of a Pathogenic Molecular Clone of an End-Stage Serum-Derived Variant of Simian Immunodeficiency Virus (SIVF359) Journal of Virology. 75: 9328-9338. PMID 11533196 DOI: 10.1128/Jvi.75.19.9328-9338.2001  0.406
2001 Kreisberg JF, Kwa D, Schramm B, Trautner V, Connor R, Schuitemaker H, Mullins JI, van't Wout AB, Goldsmith MA. Cytopathicity of human immunodeficiency virus type 1 primary isolates depends on coreceptor usage and not patient disease status. Journal of Virology. 75: 8842-7. PMID 11507229 DOI: 10.1128/Jvi.75.18.8842-8847.2001  0.536
2001 Frey SC, Hoover EA, Mullins JI. Feline immunodeficiency virus cell entry. Journal of Virology. 75: 5433-40. PMID 11333931 DOI: 10.1128/Jvi.75.11.5433-5440.2001  0.791
2001 Bulterys MB, Fowler MG, Hanson IC, Lemay M, Mayaux MJ, Mofenson L, Newell ML, Peavy H, Peckham C, Read JS, Rother C, Simpson BJ, Van Dyke RB, Harris DR, Peavy HH, ... ... Mullins J, et al. Duration of ruptured membranes and vertical transmission of HIV-1: A meta-analysis from 15 prospective cohort studies Aids. 15: 357-368. PMID 11273216 DOI: 10.1097/00002030-200102160-00009  0.401
2001 Frenkel LM, Mullins JI. Should patients with drug-resistant HIV-1 continue to receive antiretroviral therapy? The New England Journal of Medicine. 344: 520-2. PMID 11172196 DOI: 10.1056/Nejm200102153440710  0.512
2001 Altfeld M, Rosenberg ES, Shankarappa R, Mukherjee JS, Hecht FM, Eldridge RL, Addo MM, Poon SH, Phillips MN, Robbins GK, Sax PE, Boswell S, Kahn JO, Brander C, Goulder PJ, ... ... Mullins JI, et al. Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection. The Journal of Experimental Medicine. 193: 169-80. PMID 11148221 DOI: 10.1084/Jem.193.2.169  0.498
2000 Anderson JP, Rodrigo AG, Learn GH, Madan A, Delahunty C, Coon M, Girard M, Osmanov S, Hood L, Mullins JI. Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E Journal of Virology. 74: 10752-10765. PMID 11044120 DOI: 10.1128/Jvi.74.22.10752-10765.2000  0.506
2000 Russell KL, Carcamo C, Watts DM, Sanchez J, Gotuzzo E, Euler A, Blanco JC, Galeano A, Alava A, Mullins JI, Holmes KK, Carr JK. Emerging genetic diversity of HIV-1 in South America. Aids (London, England). 14: 1785-91. PMID 10985316 DOI: 10.1097/00002030-200008180-00014  0.51
2000 Kliks S, Contag CH, Corliss H, Learn G, Rodrigo A, Wara D, Mullins JI, Levy JA. Genetic analysis of viral variants selected in transmission of human immunodeficiency viruses to newborns. Aids Research and Human Retroviruses. 16: 1223-33. PMID 10957720 DOI: 10.1089/08892220050116998  0.57
2000 Chun TW, Davey RT, Ostrowski M, Shawn Justement J, Engel D, Mullins JI, Fauci AS. Relationship between pre-existing viral reservoirs and the re-emergence of plasma viremia after discontinuation of highly active anti-retroviral therapy. Nature Medicine. 6: 757-61. PMID 10888923 DOI: 10.1038/77481  0.521
2000 Upchurch DA, Shankarappa R, Mullins JI. Position and degree of mismatches and the mobility of DNA heteroduplexes Nucleic Acids Research. 28. PMID 10871392 DOI: 10.1093/Nar/28.12.E69  0.386
2000 Panther LA, Tucker L, Xu C, Tuomala RE, Mullins JI, Anderson DJ. Genital tract human immunodeficiency virus type 1 (HIV-1) shedding and inflammation and HIV-1 env diversity in perinatal HIV-1 transmission. The Journal of Infectious Diseases. 181: 555-63. PMID 10669339 DOI: 10.1086/315230  0.542
2000 Holterman L, Dubbes R, Mullins J, Haaijman J, Heeney J. A strategy for cloning infectious molecular clones of retroviruses from serum or plasma. Journal of Virological Methods. 84: 37-48. PMID 10644085 DOI: 10.1016/S0166-0934(99)00136-6  0.413
2000 Loeb LA, Mullins JI. Lethal mutagenesis of HIV by mutagenic ribonucleoside analogs. Aids Research and Human Retroviruses. 16: 1-3. PMID 10628810 DOI: 10.1089/088922200309539  0.563
2000 Geiss GK, Bumgarner RE, An MC, Agy MB, van 't Wout AB, Hammersmark E, Carter VS, Upchurch D, Mullins JI, Katze MG. Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays. Virology. 266: 8-16. PMID 10612655 DOI: 10.1006/Viro.1999.0044  0.467
1999 Iversen AK, Learn GH, Fugger L, Gerstoft J, Mullins JI, Skinhoj P. Presence of multiple HIV subtypes and a high frequency of subtype chimeric viruses in heterosexually infected women. Journal of Acquired Immune Deficiency Syndromes (1999). 22: 325-32. PMID 10634193 DOI: 10.1097/00126334-199912010-00002  0.551
1999 Mulvania T, Lynch JB, Robertson MN, Greenberg PD, Morton WR, Mullins JI. Antigen-specific cytokine responses in vaccinated Macaca nemestrina Journal of Medical Primatology. 28: 181-189. PMID 10593484 DOI: 10.1111/J.1600-0684.1999.Tb00268.X  0.503
1999 Shankarappa R, Margolick JB, Gange SJ, Rodrigo AG, Upchurch D, Farzadegan H, Gupta P, Rinaldo CR, Learn GH, He X, Huang XL, Mullins JI. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection Journal of Virology. 73: 10489-10502. PMID 10559367 DOI: 10.1128/Jvi.73.12.10489-10502.1999  0.624
1999 Melvin AJ, Rodrigo AG, Mohan KM, Lewis PA, Manns-Arcuino L, Coombs RW, Mullins JI, Frenkel LM. HIV-1 dynamics in children. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology : Official Publication of the International Retrovirology Association. 20: 468-73. PMID 10225229 DOI: 10.1097/00042560-199904150-00009  0.434
1999 Rodrigo AG, Shpaer EG, Delwart EL, Iversen AK, Gallo MV, Brojatsch J, Hirsch MS, Walker BD, Mullins JI. Coalescent estimates of HIV-1 generation time in vivo. Proceedings of the National Academy of Sciences of the United States of America. 96: 2187-91. PMID 10051616 DOI: 10.1073/Pnas.96.5.2187  0.425
1999 Tien PC, Chiu T, Latif A, Ray S, Batra M, Contag CH, Zejena L, Mbizvo M, Delwart EL, Mullins JI, Katzenstein DA. Primary subtype C HIV-1 infection in Harare, Zimbabwe. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology : Official Publication of the International Retrovirology Association. 20: 147-53. PMID 10048901 DOI: 10.1097/00042560-199902010-00006  0.688
1999 Loeb LA, Essigmann JM, Kazazi F, Zhang J, Rose KD, Mullins JI. Lethal mutagenesis of HIV with mutagenic nucleoside analogs. Proceedings of the National Academy of Sciences of the United States of America. 96: 1492-7. PMID 9990051 DOI: 10.1073/Pnas.96.4.1492  0.567
1998 Rinaldo C.R. J, Gupta P, Huang XL, Fan Z, Mullins JI, Gange S, Farzadegan H, Shankarappa R, Munoz A, Margolick JB. Anti-HIV type 1 memory cytotoxic T lymphocyte responses associated with changes in CD4+ T cell numbers in progression of HIV type 1 infection Aids Research and Human Retroviruses. 14: 1423-1433. PMID 9824320 DOI: 10.1089/Aid.1998.14.1423  0.503
1998 Iversen AK, Fugger L, Eugen-Olsen J, Balslev U, Jensen T, Wahl S, Gerstoft J, Mullins JI, Skinhoj P. Cervical human immunodeficiency virus type 1 shedding is associated with genital beta-chemokine secretion. The Journal of Infectious Diseases. 178: 1334-42. PMID 9780253 DOI: 10.1086/314433  0.307
1998 Mulvania T, Coon E, Kuller L, Agy MB, Morton WR, Mullins JI. Natural history of SIVmac BK28 and H824 infection in Macaca nemestrina Journal of Medical Primatology. 27: 87-93. PMID 9747948 DOI: 10.1111/J.1600-0684.1998.Tb00231.X  0.384
1998 Iversen AK, Larsen AR, Jensen T, Fugger L, Balslev U, Wahl S, Gerstoft J, Mullins JI, Skinhøj P. Distinct determinants of human immunodeficiency virus type 1 RNA and DNA loads in vaginal and cervical secretions. The Journal of Infectious Diseases. 177: 1214-20. PMID 9593006 DOI: 10.1086/515266  0.505
1998 Frenkel LM, Mullins JI, Learn GH, Manns-Arcuino L, Herring BL, Kalish ML, Steketee RW, Thea DM, Nichols JE, Liu SL, Harmache A, He X, Muthui D, Madan A, Hood L, et al. Genetic evaluation of suspected cases of transient HIV-1 infection of infants. Science (New York, N.Y.). 280: 1073-7. PMID 9582120 DOI: 10.1126/Science.280.5366.1073  0.613
1998 Polyak SJ, McArdle S, Liu SL, Sullivan DG, Chung M, Hofgärtner WT, Carithers RL, McMahon BJ, Mullins JI, Corey L, Gretch DR. Evolution of hepatitis C virus quasispecies in hypervariable region 1 and the putative interferon sensitivity-determining region during interferon therapy and natural infection. Journal of Virology. 72: 4288-96. PMID 9557719 DOI: 10.1128/Jvi.72.5.4288-4296.1998  0.3
1998 Shankarappa R, Gupta P, Learn GH, Rodrigo AG, Rinaldo CR, Gorry MC, Mullins JI, Nara PL, Ehrlich GD. Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles. Virology. 241: 251-9. PMID 9499799 DOI: 10.1006/Viro.1997.8996  0.527
1998 Delwart EL, Mullins JI, Gupta P, Learn GH, Holodniy M, Katzenstein D, Walker BD, Singh MK. Human immunodeficiency virus type 1 populations in blood and semen Journal of Virology. 72: 617-623. PMID 9420266 DOI: 10.1128/Jvi.72.1.617-623.1998  0.475
1998 Edmonson P, Murphey-Corb M, Martin LN, Delahunty C, Heeney J, Kornfeld H, Donahue PR, Learn GH, Hood L, Mullins JI. Evolution of a simian immunodeficiency virus pathogen Journal of Virology. 72: 405-414. PMID 9420239 DOI: 10.1128/Jvi.72.1.405-414.1998  0.4
1997 Delwart EL, Pan H, Sheppard HW, Wolpert D, Neumann AU, Korber B, Mullins JI. Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS Journal of Virology. 71: 7498-7508. PMID 9311829 DOI: 10.1128/Jvi.71.10.7498-7508.1997  0.498
1997 Mullins JI. Curtailing the AIDS pandemic [2] Science. 276: 1955-1957. PMID 9221490 DOI: 10.1126/Science.276.5321.1953B  0.423
1997 Rodrigo AG, Goracke PC, Rowhanian K, Mullins JI. Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays Aids Research and Human Retroviruses. 13: 737-742. PMID 9171217 DOI: 10.1089/Aid.1997.13.737  0.305
1997 Liu SL, Schacker T, Musey L, Shriner D, McElrath MJ, Corey L, Mullins JI. Divergent patterns of progression to AIDS after infection from the same source: Human immunodeficiency virus type 1 evolution and antiviral responses Journal of Virology. 71: 4284-4295. PMID 9151816 DOI: 10.1128/Jvi.71.6.4284-4295.1997  0.731
1997 Bachmann MH, Mathiason-Dubard C, Learn GH, Rodrigo AG, Sodora DL, Mazzetti P, Hoover EA, Mullins JI. Genetic diversity of feline immunodeficiency virus: Dual infection, recombination, and distinct evolutionary rates among envelope sequence clades Journal of Virology. 71: 4241-4253. PMID 9151811 DOI: 10.1128/Jvi.71.6.4241-4253.1997  0.418
1997 Contag CH, Ehrnst A, Duda J, Bohlin AB, Lindgren S, Learn GH, Mullins JI. Mother-to-infant transmission of human immunodeficiency virus type 1 involving five envelope sequence subtypes Journal of Virology. 71: 1292-1300. PMID 8995653 DOI: 10.1128/Jvi.71.2.1292-1300.1997  0.565
1996 Rodrigo AG, Mullins JI. Human immunodeficiency virus type 1 molecular evolution and the measure of selection Aids Research and Human Retroviruses. 12: 1681-1685. PMID 8959243 DOI: 10.1089/Aid.1996.12.1681  0.485
1996 Sabino EC, Diaz RS, Brigido LF, Learn GH, Mullins JI, Reingold AL, Duarte AJS, Mayer A, Busch MP. Distribution of HIV-1 subtypes seen in an AIDS clinic in Sao Paulo City, Brazil Aids. 10: 1579-1584. PMID 8931795 DOI: 10.1097/00002030-199611000-00018  0.483
1996 Bickel PJ, Cosman PC, Olshen RA, Spector PC, Rodrigo AG, Mullins JI. Covariability of V3 loop amino acids. Aids Research and Human Retroviruses. 12: 1401-11. PMID 8893048 DOI: 10.1089/Aid.1996.12.1401  0.405
1996 Goulston C, Stevens E, Gallo D, Mullins JI, Hanson CV, Katzenstein D. Human immunodeficiency virus in plasma and genital secretions during the menstrual cycle Journal of Infectious Diseases. 174: 858-861. PMID 8843230 DOI: 10.1093/Infdis/174.4.858  0.482
1996 Quackenbush SL, Dean GA, Mullins JI, Hoover EA. Analysis of FeLV-FAIDS provirus burden and productive infection in lymphocyte subsets in vivo Virology. 223: 1-9. PMID 8806534 DOI: 10.1006/Viro.1996.0449  0.368
1996 Learn GH, Korber BTM, Foley B, Hahn BH, Wolinsky SM, Mullins JI. Maintaining the integrity of human immunodeficiency virus sequence databases Journal of Virology. 70: 5720-5730. PMID 8764096 DOI: 10.1128/Jvi.70.8.5720-5730.1996  0.462
1996 Quackenbush SL, Mullins JI, Hoover EA. Replication kinetics and cell tropism of an immunosuppressive feline leukaemia virus Journal of General Virology. 77: 1411-1420. PMID 8757981 DOI: 10.1099/0022-1317-77-7-1411  0.413
1996 Liu SL, Rodrigo AG, Shankarappa R, Learn GH, Hsu L, Davidov O, Zhao LP, Mullins JI. HIV quasispecies and resampling. Science (New York, N.Y.). 273: 415-6. PMID 8677432 DOI: 10.1126/Science.273.5274.415  0.469
1996 McElrath MJ, Corey L, Greenberg PD, Matthews TJ, Montefiori DC, Rowen L, Hood L, Mullins JI. Human immunodeficiency virus type 1 infection despite prior immunization with a recombinant envelope vaccine regimen. Proceedings of the National Academy of Sciences of the United States of America. 93: 3972-7. PMID 8633000 DOI: 10.1073/Pnas.93.9.3972  0.58
1996 Iversen AK, Shafer RW, Wehrly K, Winters MA, Mullins JI, Chesebro B, Merigan TC. Multidrug-resistant human immunodeficiency virus type 1 strains resulting from combination antiretroviral therapy. Journal of Virology. 70: 1086-90. PMID 8551567 DOI: 10.1128/Jvi.70.2.1086-1090.1996  0.5
1996 Robinson HL, Lu S, Mustafa F, Johnson E, Santoro JC, Arthos J, Winsink J, Mullins JI, Montefiori D, Yasutomi Y. Simian immunodeficiency virus DNA vaccine trial in macaques. Annals of the New York Academy of Sciences. 772: 209-11. PMID 8546394 DOI: 10.1128/Jvi.70.6.3978-3991.1996  0.391
1996 De Noronha CMC, Reinhart TA, Mullins JI. Generation and role of defective proviruses in cytopathic feline leukemia virus (FeLV-FAIDS) infections Journal of Virology. 70: 359-367. PMID 8523548 DOI: 10.1128/Jvi.70.1.359-367.1996  0.415
1996 Yasutomi Y, Robinson HL, Lu S, Mustafa F, Lekutis C, Arthos J, Mullins JI, Voss G, Manson K, Wyand M, Letvin NL. Simian immunodeficiency virus-specific cytotoxic T-lymphocyte induction through DNA vaccination of rhesus monkeys. Journal of Virology. 70: 678-681. DOI: 10.1128/Jvi.70.1.678-681.1996  0.511
1996 Liu S, Rodrigo AG, Shankarappa R, Learn GH, Hsu L, Davidov O, Zhao LP, Mullins; JI, Haynes BF, Pantaleo G, Fauci AS. HIV Quasispecies and Resampling Science. 273: 413c-417. DOI: 10.1126/science.273.5274.413c  0.424
1995 Contag CH, Contag PR, Mullins JI, Spilman SD, Stevenson DK, Benaron DA. Photonic detection of bacterial pathogens in living hosts Molecular Microbiology. 18: 593-603. PMID 8817482 DOI: 10.1111/J.1365-2958.1995.Mmi_18040593.X  0.477
1995 Delwart EL, Busch MP, Kalish ML, Mosley JW, Mullins JI. Rapid molecular epidemiology of human immunodeficiency virus transmission. Aids Research and Human Retroviruses. 11: 1081-93. PMID 8554905  0.461
1995 Bachmann MH, Delwart EL, Shpaer EG, Lingenfelter P, Singal R, Mullins JI. Rapid genetic characterization of HIV type 1 strains from four World Health Organization-sponsored vaccine evaluation sites using a heteroduplex mobility assay. WHO Network for HIV Isolation and Characterization. Aids Research and Human Retroviruses. 10: 1345-53. PMID 7888187 DOI: 10.1089/Aid.1994.10.1345  0.554
1995 Bobkov A, Cheingsong-Popov R, Garaev M, Rzhaninova A, Kaleebu P, Beddows S, Bachmann MH, Mullins JI, Louwagie J, Janssens W. Identification of an env G subtype and heterogeneity of HIV-1 strains in the Russian Federation and Belarus. Aids (London, England). 8: 1649-55. PMID 7888112 DOI: 10.1097/00002030-199412000-00002  0.538
1995 Wang RF, Mullins JI. Mammalian cell/vaccinia virus expression vectors with increased stability of retroviral sequences in Escherichia coli: production of feline immunodeficiency virus envelope protein Gene. 153: 197-202. PMID 7875588 DOI: 10.1016/0378-1119(94)00743-C  0.367
1995 Iversen AK, Shpaer EG, Rodrigo AG, Hirsch MS, Walker BD, Sheppard HW, Merigan TC, Mullins JI. Persistence of attenuated rev genes in a human immunodeficiency virus type 1-infected asymptomatic individual. Journal of Virology. 69: 5743-53. PMID 7637019 DOI: 10.1128/Jvi.69.9.5743-5753.1995  0.525
1995 Sodora DL, Courcelle J, Brojatsch J, Berson A, Wang YC, Dow SW, Hoover EA, Mullins JI. Analysis of a feline immunodeficiency virus provirus reveals patterns of gene sequence conservation distinct from human immunodeficiency virus type 1 Aids Research and Human Retroviruses. 11: 531-533. PMID 7632468 DOI: 10.1089/Aid.1995.11.531  0.41
1995 Delwart EL, Herring B, Rodrigo AG, Mullins JI. Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay Pcr Methods and Applications. 4. PMID 7580909 DOI: 10.1101/Gr.4.5.S202  0.372
1995 Ghosh AK, Mullins JI. cDNA Encoding a Functional Feline Liver/Bone/Kidney-Type Alkaline Phosphatase Archives of Biochemistry and Biophysics. 322: 240-249. PMID 7574682 DOI: 10.1006/Abbi.1995.1458  0.307
1995 Korber BTM, Learn G, Mullins JI, Hahn BH, Wolinsky S. Protecting HIV databases [6] Nature. 378: 242-243. PMID 7477340 DOI: 10.1038/378242A0  0.515
1994 Sodora DL, Shpaer EG, Kitchell BE, Dow SW, Hannover EA, Mullins JI. Identification of three feline immunodiciency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns Journal of Virology. 68: 2230-2238. PMID 8139008 DOI: 10.1128/Jvi.68.4.2230-2238.1994  0.597
1994 Grez M, Dietrich U, Balfe P, Von Briesen H, Maniar JK, Mahambre G, Delwart EL, Mullins JI, Rübsamen-Waigmann H. Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses Journal of Virology. 68: 2161-2168. PMID 8139000 DOI: 10.1128/Jvi.68.4.2161-2168.1994  0.575
1994 Delwart EL, Sheppard HW, Walker BD, Goudsmit J, Mullins JI. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays Journal of Virology. 68: 6672-6683. PMID 8084001 DOI: 10.1128/Jvi.68.10.6672-6683.1994  0.462
1994 Sabino EC, Delwart E, Lee TH, Mayer A, Mullins JI, Busch MP. Identification of low-level contamination of blood as basis for detection of human immunodeficiency virus (HIV) DNA in Anti-HIV-negative specimens Journal of Acquired Immune Deficiency Syndromes. 7: 853-859. PMID 8021818  0.425
1994 Louwagie J, Delwart EL, Mullins JI, McCutchan FE, Eddy G, Burke DS. Genetic analysis of HIV-1 isolates from Brazil reveals presence of two distinct genetic subtypes. Aids Research and Human Retroviruses. 10: 561-7. PMID 7917518  0.398
1994 Shpaer EG, Delwart EL, Kuiken CL, Goudsmit J, Bachmann MH, Mullins JI. Conserved V3 loop sequences and transmission of human immunodeficiency virus type 1 Aids Research and Human Retroviruses. 10: 1679-1684. PMID 7888227 DOI: 10.1089/Aid.1994.10.1679  0.533
1994 Morgado MG, Sabino EC, Shpaer EG, Bongertz V, Brigido L, Guimaraes MD, Castilho EA, Galvão-Castro B, Mullins JI, Hendry RM. V3 region polymorphisms in HIV-1 from Brazil: prevalence of subtype B strains divergent from North American/European prototype and detection of subtype F. Aids Research and Human Retroviruses. 10: 569-76. PMID 7522493 DOI: 10.1089/aid.1994.10.569  0.344
1994 Sabino EC, Shpaer EG, Morgado MG, Korber BT, Diaz RS, Bongertz V, Cavalcante S, Galvão-Castro B, Mullins JI, Mayer A. Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals from Brazil. Journal of Virology. 68: 6340-6346. DOI: 10.1128/Jvi.68.10.6340-6346.1994  0.398
1993 Israel ZR, Dean GA, Maul DH, O'Neil SP, Dreitz MJ, Mullins JI, Fultz PN, Hoover EA. Early pathogenesis of disease caused by SIVsmmPBj14 molecular clone 1.9 in macaques Aids Research and Human Retroviruses. 9: 277-286. PMID 8471319 DOI: 10.1089/Aid.1993.9.277  0.372
1993 Shpaer EG, Mullins JI. Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentiviruses Journal of Molecular Evolution. 37: 57-65. PMID 8395604 DOI: 10.1007/Bf00170462  0.499
1993 Reinhart TA, Ghosh AK, Hoover EA, Mullins JI. Distinct superinfection interference properties yet similar receptor utilization by cytopathic and noncytopathic feline leukemia viruses Journal of Virology. 67: 5153-5162. PMID 8394443 DOI: 10.1128/Jvi.67.9.5153-5162.1993  0.367
1993 Kristal BS, Reinhart TA, Hoover EA, Mullins JI. Interference with superinfection and with cell killing and determination of host range and growth kinetics mediated by feline leukemia virus surface glycoproteins Journal of Virology. 67: 4142-4153. PMID 8389921 DOI: 10.1128/Jvi.67.7.4142-4153.1993  0.406
1993 Krohn KJE, Hakkarainen K, Aavik E, Dewhurst S, Sadaie R, Mullins JI. Transcomplementation of simian immunodeficiency virus Rev with human T-cell leukemia virus type I Rex Journal of Virology. 67: 5681-5684. PMID 8350422 DOI: 10.1128/Jvi.67.9.5681-5684.1993  0.409
1993 Delwart EL, Shpaer EG, Louwagie J, McCutchan FE, Grez M, Rubsamen- Waigmann H, Mullins JI. Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes Science. 262: 1257-1261. PMID 8235655 DOI: 10.1126/Science.8235655  0.559
1992 Ou CY, Ciesielski CA, Myers G, Bandea CI, Luo CC, Korber BTM, Mullins JI, Schochetman G, Berkelman RL, Economou AN, Witte JJ, Furman LJ, Satten GA, MacInnes KA, Curran JW, et al. Molecular epidemiology of HIV transmission in a dental practice Science. 256: 1165-1171. PMID 1589796 DOI: 10.1126/Science.256.5060.1165  0.533
1992 Edmonson PF, Mullins JI. Efficient amplification of HIV half-genomes from tissue DNA Nucleic Acids Research. 20: 4933. PMID 1408811 DOI: 10.1093/Nar/20.18.4933  0.451
1992 Brojatsch J, Kristal BS, Viglianti GA, Khiroya R, Hoover EA, Mullins JI. Feline leukemia virus subgroup C phenotype evolves through distinct alterations near the N terminus of the envelope surface glycoprotein Proceedings of the National Academy of Sciences of the United States of America. 89: 8457-8461. PMID 1326757 DOI: 10.1073/Pnas.89.18.8457  0.342
1992 Dean GA, Groshek PM, Mullins JI, Hoover EA. Hematopoietic target cells of anemogenic subgroup C versus nonanemogenic subgroup A feline leukemia virus Journal of Virology. 66: 5561-5568. PMID 1323710 DOI: 10.1128/Jvi.66.9.5561-5568.1992  0.37
1992 Overbaugh J, Hoover EA, Mullins JI, Burns DPW, Rudensey L, Quackenbush SL, Stallard V, Donahue PR. Structure and pathogenicity of individual variants within an immunodeficiency disease-inducing isolate of FeLV Virology. 188: 558-569. PMID 1316674 DOI: 10.1016/0042-6822(92)90510-V  0.389
1992 Ghosh AK, Bachmann MH, Hoover EA, Mullins JI. Identification of a putative receptor for subgroup A feline leukemia virus on feline T cells Journal of Virology. 66: 3707-3714. PMID 1316477 DOI: 10.1128/Jvi.66.6.3707-3714.1992  0.322
1991 Hoover EA, Mullins JI. Feline leukemia virus infection and diseases Journal of the American Veterinary Medical Association. 199: 1287-1297. PMID 1666070  0.303
1991 Hoover EA, Ebner JP, Zeidner NS, Mullins JI. Early therapy of feline leukemia virus infection (FeLV-FAIDS) with 9-(2-phosphonyl-methoxyethyl)adenine (PMEA) Antiviral Research. 16: 77-92. PMID 1663730 DOI: 10.1016/0166-3542(91)90060-5  0.394
1991 Pardi D, Hoover EA, Quackenbush SL, Mullins JI, Callahan GN. Selective impairment of humoral immunity in feline leukemia virus-induced immunodeficiency Veterinary Immunology and Immunopathology. 28: 183-200. PMID 1659028 DOI: 10.1016/0165-2427(91)90114-R  0.403
1991 Donahue PR, Quackenbush SL, Gallo MV, Denoronha CMC, Overbaugh J, Hoover EA, Mullins JI. Viral genetic determinants of T-cell killing and immunodeficiency disease induction by the feline leukemia virus FeLV-FAIDS Journal of Virology. 65: 4461-4469. PMID 1649341 DOI: 10.1128/Jvi.65.8.4461-4469.1991  0.404
1990 Zeidner NS, Myles MH, Mathiason-DuBard CK, Dreitz MJ, Mullins JI, Hoover EA. Alpha interferon (2b) in combination with zidovudine for the treatment of presymptomatic feline leukemia virus-induced immunodeficiency syndrome Antimicrobial Agents and Chemotherapy. 34: 1749-1756. PMID 2178336 DOI: 10.1128/Aac.34.9.1749  0.301
1990 Shpaer EG, Mullins JI. Selection against CpG dinucleotides in lentiviral genes: A possible role of methylation in regulation of viral expression Nucleic Acids Research. 18: 5793-5797. PMID 2170945 DOI: 10.1093/Nar/18.19.5793  0.467
1990 Poss ML, Quackenbush SL, Mullins JI, Hoover EA. Characterization and Significance of Delayed Processing of the Feline Leukemia Virus FeLV-FAIDS Envelope Glycoprotein Journal of Virology. 64: 4338-4345. PMID 2166820 DOI: 10.1128/Jvi.64.9.4338-4345.1990  0.36
1990 Fultz PN, Anderson DC, McClure HM, Dewhurst S, Mullins JI. SIVsmm infection of macaque and mangabey monkeys: correlation between in vivo and in vitro properties of different isolates Developments in Biological Standardization. 72: 253-258. PMID 1980901  0.358
1990 Quackenbush SL, Donahue PR, Dean GA, Myles MH, Ackley CD, Cooper MD, Mullins JI, Hoover EA. Lymphocyte subset alterations and viral determinants of immunodeficiency disease induction by the feline leukemia virus FeLV-FAIDS Journal of Virology. 64: 5465-5474. PMID 1976822 DOI: 10.1128/Jvi.64.11.5465-5474.1990  0.404
1990 Dewhurst S, Embretson JE, Anderson DC, Mullins JI, Fultz PN. Sequence analysis and acute pathogenicity of molecularly cloned SIVSMM-PBj14 Nature. 345: 636-640. PMID 1971917 DOI: 10.1038/345636A0  0.384
1990 Hoover EA, Zeidner NS, Mullins JI. Therapy of presymptomatic FeLV-induced immunodeficiency syndrome with AZT in combination with alpha interferon Annals of the New York Academy of Sciences. 616: 258-269. PMID 1964030 DOI: 10.1111/J.1749-6632.1990.Tb17846.X  0.355
1989 Dornsife RE, Gasper PW, Mullins JI, Hoover EA. Induction of aplastic anemia by intra-bone marrow inoculation of a molecularly cloned feline retrovirus Leukemia Research. 13: 745-755. PMID 2552228 DOI: 10.1016/0145-2126(89)90087-8  0.322
1989 Mullins JI, Hoover EA, Overbaugh J, Quackenbush SL, Donahue PR, Poss ML. FeLV-FAIDS-induced immunodeficiency syndrome in cats Veterinary Immunology and Immunopathology. 21: 25-37. PMID 2549691 DOI: 10.1016/0165-2427(89)90127-X  0.481
1989 Hoover EA, Zeidner NS, Perigo NA, Quackenbush SL, Strobel JD, Hill DL, Mullins JI. Feline leukemia virus-induced immunodeficiency syndrome in cats as a model for evaluation of antiretroviral therapy Intervirology. 30: 12-25. PMID 2540109 DOI: 10.1159/000150120  0.387
1989 Doggett DL, Drake AL, Hirsch V, Rowe ME, Stallard V, Mullins JI. Structure, origin, and transforming activity of feline leukemia virus-myc recombinant provirus FTT Journal of Virology. 63: 2108-2117. PMID 2539507 DOI: 10.1128/Jvi.63.5.2108-2117.1989  0.347
1989 Quackenbush SL, Mullins JI, Hoover EA. Colony forming T lymphocyte deficit in the development of feline retrovirus induced immunodeficiency syndrome Blood. 73: 509-516. PMID 2537113 DOI: 10.1182/Blood.V73.2.509.509  0.328
1989 Poss ML, Mullins JI, Hoover EA. Posttranslational modifications distinguish the envelope glycoprotein of the immunodeficiency disease-inducing feline leukemia virus retrovirus Journal of Virology. 63: 189-195. PMID 2535725 DOI: 10.1128/Jvi.63.1.189-195.1989  0.357
1988 Overbaugh J, Riedel N, Hoover EA, Mullins JI. Transduction of endogenous envelope genes by feline leukaemia virus in vitro Nature. 332: 731-734. PMID 2895894 DOI: 10.1038/332731A0  0.397
1988 Overbaugh J, Donahue PR, Quackenbush SL, Hoover EA, Mullins JI. Molecular cloning of a feline leukemia virus that induces fatal immunodeficiency disease in cats Science. 239: 906-910. PMID 2893454 DOI: 10.1126/Science.2893454  0.418
1988 Viglianti GA, Mullins JI. Functional comparison of transactivation by simian immunodeficiency virus from rhesus macaques and human immunodeficiency virus type 1 Journal of Virology. 62: 4523-4532. PMID 2846868 DOI: 10.1128/Jvi.62.12.4523-4532.1988  0.533
1988 Riedel N, Hoover EA, Dornsife RE, Mullins JI. Pathogenic and host range determinants of the feline aplastic anemia retrovirus Proceedings of the National Academy of Sciences of the United States of America. 85: 2758-2762. PMID 2833751 DOI: 10.1073/Pnas.85.8.2758  0.352
1988 Donahue PR, Hoover EA, Beltz GA, Riedel N, Hirsch VM, Overbaugh J, Mullins JI. Strong sequence conservation among horizontally transmissible, minimally pathogenic feline leukemia viruses Journal of Virology. 62: 722-731. PMID 2828667 DOI: 10.1128/Jvi.62.3.722-731.1988  0.396
1987 Hirsch V, Riedel N, Mullins JI. The genome organization of STLV-3 is similar to that of the AIDS virus except for a truncated transmembrane protein Cell. 49: 307-319. PMID 3646094 DOI: 10.1016/0092-8674(87)90283-2  0.494
1987 Kornfeld H, Riedel N, Viglianti GA, Hirsch V, Mullins JI. Cloning of HTLV-4 and its relation to simian and human immunodeficiency viruses Nature. 326: 610-613. PMID 3104797 DOI: 10.1038/326610A0  0.576
1987 Hoover EA, Mullins JI, Quackenbush SL, Gasper PW. Experimental transmission and pathogenesis of immunodeficiency syndrome in cats Blood. 70: 1880-1892. PMID 2823940 DOI: 10.1182/Blood.V70.6.1880.Bloodjournal7061880  0.398
1986 Hirsch V, Riedel N, Kornfeld H, Kanki PJ, Essex M, Mullins JI. Cross-reactivity to human T-lymphotropic virus type III/lymphadenopathy-associated virus and molecular cloning of simian T-cell lymphotropic virus type III from African green monkeys Proceedings of the National Academy of Sciences of the United States of America. 83: 9754-9758. PMID 3491989 DOI: 10.1073/Pnas.83.24.9754  0.396
1986 Sureau C, Romet-Lemonne JL, Mullins JI, Essex M. Production of hepatitis B virus by a differentiated human hepatoma cell line after transfection with cloned circular HBV DNA Cell. 47: 37-47. PMID 3019565 DOI: 10.1016/0092-8674(86)90364-8  0.332
1986 Riedel N, Hoover EA, Gasper PW, Nicolson MO, Mullins JI. Molecular analysis and pathogenesis of the feline aplastic anemia retrovirus, feline leukemia virus C-Sarma Journal of Virology. 60: 242-250. PMID 3018287 DOI: 10.1128/Jvi.60.1.242-250.1986  0.367
1986 Mullins JI, Chen CS, Hoover EA. Disease-specific and tissue-specific production of unintegrated feline leukaemia virus variant DNA in feline AIDS Nature. 319: 333-336. PMID 3001539 DOI: 10.1038/319333A0  0.4
1984 Mullins JI, Brody DS, Binari RC, Cotter SM. Viral transduction of c-myc gene in naturally occurring feline leukaemias Nature. 308: 856-858. PMID 6325922 DOI: 10.1038/308856A0  0.363
1983 Essex M, McLane MF, Lee TH, Tachibana N, Mullins JI, Kreiss J, Kasper CK, Poon MC, Landay A, Stein SF, Francis DP, Cabradilla C, Lawrence DN, Evatt BL. Antibodies to human T-cell leukemia virus membrane antigens (HTLV-MA) in hemophiliacs. Science (New York, N.Y.). 221: 1061-4. PMID 6603659 DOI: 10.1126/Science.6603659  0.322
1983 Essex M, McLane MF, Lee TH, Falk L, Howe CWS, Mullins JI, Cabradilla C, Francis DP. Antibodies to cell membrane antigens associated with human T-cell leukemia virus in patients with AIDS Science. 220: 859-862. PMID 6342136 DOI: 10.1126/Science.6342136  0.382
1983 Elder JH, Mullins JI. Nucleotide sequence of the envelope gene of Gardner-Arnstein feline leukemia virus B reveals unique sequence homologies with a murine mink cell focus-forming virus Journal of Virology. 46: 871-880. PMID 6304347 DOI: 10.1128/Jvi.46.3.871-880.1983  0.366
1979 Mullins JI, Blumenfeld M. Satellite Ic: a possible link between the satellite DNAs of D. virilis and D. melanogaster Cell. 17: 615-621. PMID 113107 DOI: 10.1016/0092-8674(79)90269-1  0.737
1978 Blumenfeld M, Orf JW, Sina BJ, Kreber RA, Callahan MA, Mullins JI, Snyder LA. Correlation between phosphorylated H1 histones and satellite DNAs in Drosophila virilis Proceedings of the National Academy of Sciences of the United States of America. 75: 866-870. PMID 273248 DOI: 10.1073/Pnas.75.2.866  0.742
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