Konrad Ulrich Förstner, Ph.D. - Publications

Affiliations: 
2011-2013 IMIB/ZINF University of Würzburg, Würzburg, Bayern, Germany 
 2013- Core Unit Systems Medicine University of Würzburg, Würzburg, Bayern, Germany 
Area:
Systems biology, Infection research, Bioinformatics, RNA-regulation
Website:
http://konrad.foerstner.org

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Melior H, Maaß S, Li S, Förstner KU, Azarderakhsh S, Varadarajan AR, Stötzel M, Elhossary M, Barth-Weber S, Ahrens CH, Becher D, Evguenieva-Hackenberg E. The Leader Peptide peTrpL Forms Antibiotic-Containing Ribonucleoprotein Complexes for Posttranscriptional Regulation of Multiresistance Genes. Mbio. 11. PMID 32546623 DOI: 10.1128/mBio.01027-20  0.44
2019 Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J. The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium. Mbio. 10. PMID 30602583 DOI: 10.1128/Mbio.02504-18  0.44
2018 Müller LSM, Cosentino RO, Förstner KU, Guizetti J, Wedel C, Kaplan N, Janzen CJ, Arampatzi P, Vogel J, Steinbiss S, Otto TD, Saliba AE, Sebra RP, Siegel TN. Genome organization and DNA accessibility control antigenic variation in trypanosomes. Nature. 563: 121-125. PMID 30333624 DOI: 10.1038/S41586-018-0619-8  0.44
2018 Yu SH, Vogel J, Förstner KU. ANNOgesic: A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes. Gigascience. PMID 30169674 DOI: 10.1093/Gigascience/Giy096  0.44
2018 Li L, Förstner KU, Chao Y. Computational Analysis of RNA-Protein Interactions via Deep Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1751: 171-182. PMID 29508297 DOI: 10.1007/978-1-4939-7710-9_12  0.44
2017 Remes B, Rische-Grahl T, Müller KMH, Förstner KU, Yu SH, Weber L, Jäger A, Peuser V, Klug G. An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides. Journal of Bacteriology. 199. PMID 28507242 DOI: 10.1128/Jb.00249-17  0.44
2017 Sharan M, Förstner KU, Eulalio A, Vogel J. APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. Nucleic Acids Research. PMID 28334975 DOI: 10.1093/Nar/Gkx137  0.44
2017 Chao Y, Li L, Girodat D, Förstner KU, Said N, Corcoran C, Śmiga M, Papenfort K, Reinhardt R, Wieden HJ, Luisi BF, Vogel J. In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell. 65: 39-51. PMID 28061332 DOI: 10.1016/J.Molcel.2016.11.002  0.44
2016 Berger P, Knödler M, Förstner KU, Berger M, Bertling C, Sharma CM, Vogel J, Karch H, Dobrindt U, Mellmann A. The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation. Scientific Reports. 6: 35307. PMID 27748404 DOI: 10.1038/srep35307  0.44
2016 Dingemans J, Monsieurs P, Yu SH, Crabbé A, Förstner KU, Malfroot A, Cornelis P, Van Houdt R. Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung. Mbio. 7. PMID 27486191 DOI: 10.1128/Mbio.00813-16  0.44
2016 Cao Y, Förstner KU, Vogel J, Smith CJ. Cis-encoded sRNAs, a conserved mechanism for repression of polysaccharide utilization in the Bacteroides. Journal of Bacteriology. PMID 27353652 DOI: 10.1128/JB.00381-16  0.44
2016 Das S, Lindemann C, Young BC, Muller J, Österreich B, Ternette N, Winkler AC, Paprotka K, Reinhardt R, Förstner KU, Allen E, Flaxman A, Yamaguchi Y, Rollier CS, van Diemen P, et al. Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27185949 DOI: 10.1073/pnas.1520255113  0.32
2016 Čuklina J, Hahn J, Imakaev M, Omasits U, Förstner KU, Ljubimov N, Goebel M, Pessi G, Fischer HM, Ahrens CH, Gelfand MS, Evguenieva-Hackenberg E. Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation. Bmc Genomics. 17: 302. PMID 27107716 DOI: 10.1186/s12864-016-2602-9  0.44
2016 Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J. Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature. 529: 496-501. PMID 26789254 DOI: 10.1038/Nature16547  0.32
2015 Fan B, Li L, Chao Y, Förstner K, Vogel J, Borriss R, Wu XQ. dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42. Plos One. 10: e0142002. PMID 26540162 DOI: 10.1371/Journal.Pone.0142002  0.32
2015 Sass AM, Van Acker H, Förstner KU, Van Nieuwerburgh F, Deforce D, Vogel J, Coenye T. Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315. Bmc Genomics. 16: 775. PMID 26462475 DOI: 10.1186/S12864-015-1993-3  0.32
2015 Papenfort K, Förstner KU, Cong JP, Sharma CM, Bassler BL. Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proceedings of the National Academy of Sciences of the United States of America. 112: E766-75. PMID 25646441 DOI: 10.1073/Pnas.1500203112  0.32
2015 Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, et al. Ten simple rules for organizing an unconference. Plos Computational Biology. 11: e1003905. PMID 25633715 DOI: 10.1371/Journal.Pcbi.1003905  0.32
2015 Thomason MK, Bischler T, Eisenbart SK, Förstner KU, Zhang A, Herbig A, Nieselt K, Sharma CM, Storz G. Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli. Journal of Bacteriology. 197: 18-28. PMID 25266388 DOI: 10.1128/Jb.02096-14  0.32
2014 Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, et al. An open science peer review oath. F1000research. 3: 271. PMID 25653839 DOI: 10.12688/f1000research.5686.2  0.32
2014 Boesler B, Meier D, Förstner KU, Friedrich M, Hammann C, Sharma CM, Nellen W. Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1. The Journal of Biological Chemistry. 289: 35124-38. PMID 25352599 DOI: 10.1074/jbc.M114.612663  0.32
2014 Möller P, Overlöper A, Förstner KU, Wen TN, Sharma CM, Lai EM, Narberhaus F. Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens. Plos One. 9: e110427. PMID 25330313 DOI: 10.1371/journal.pone.0110427  0.32
2014 Koch G, Yepes A, Förstner KU, Wermser C, Stengel ST, Modamio J, Ohlsen K, Foster KR, Lopez D. Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition. Cell. 158: 1060-71. PMID 25171407 DOI: 10.1016/j.cell.2014.06.046  0.32
2014 Förstner KU, Vogel J, Sharma CM. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data. Bioinformatics (Oxford, England). 30: 3421-3. PMID 25123900 DOI: 10.1093/bioinformatics/btu533  0.32
2014 Reynolds D, Cliffe L, Förstner KU, Hon CC, Siegel TN, Sabatini R. Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei Nucleic Acids Research. 42: 9717-9729. PMID 25104019 DOI: 10.1093/nar/gku714  0.32
2014 Krysciak D, Grote J, Rodriguez Orbegoso M, Utpatel C, Förstner KU, Li L, Schmeisser C, Krishnan HB, Streit WR. RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant. Applied and Environmental Microbiology. 80: 5655-71. PMID 25002423 DOI: 10.1128/Aem.01835-14  0.32
2014 Rische-Grahl T, Weber L, Remes B, Förstner KU, Klug G. RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides. Rna Biology. 11: 855-64. PMID 24922065 DOI: 10.4161/rna.29440  0.32
2014 Remes B, Berghoff BA, Förstner KU, Klug G. Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides Bmc Genomics. 15. DOI: 10.1186/1471-2164-15-794  0.32
2014 Maudet C, Mano M, Sunkavalli U, Sharan M, Giacca M, Förstner KU, Eulalio A. Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection Nature Communications. 5. DOI: 10.1038/ncomms5718  0.32
2013 Müller S, Windhof IM, Maximov V, Jurkowski T, Jeltsch A, Förstner KU, Sharma CM, Gräf R, Nellen W. Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA). Nucleic Acids Research. 41: 8615-27. PMID 23877245 DOI: 10.1093/nar/gkt634  0.32
2013 Berghoff BA, Konzer A, Mank NN, Looso M, Rische T, Förstner KU, Krüger M, Klug G. Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses. Plos Genetics. 9: e1003576. PMID 23818867 DOI: 10.1371/journal.pgen.1003576  0.32
2013 Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM. High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates Plos Genetics. 9. PMID 23696746 DOI: 10.1371/journal.pgen.1003495  0.32
2012 Roscetto E, Angrisano T, Costa V, Casalino M, Förstner KU, Sharma CM, Di Nocera PP, De Gregorio E. Functional characterization of the RNA Chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia Journal of Bacteriology. 194: 5864-5874. PMID 22923593 DOI: 10.1128/JB.00746-12  0.32
2012 Zhelyazkova P, Sharma CM, Förstner KU, Liere K, Vogel J, Börner T. The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. The Plant Cell. 24: 123-36. PMID 22267485 DOI: 10.1105/tpc.111.089441  0.32
2011 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/Nature09944  1
2011 Mietchen D, Hagedorn G, Förstner KU, Kubke MF, Koltzenburg C, Hahnel M, Penev L. Wikis in scholarly publishing Information Services and Use. 31: 53-59. DOI: 10.3233/ISU-2011-0621  0.32
2011 Förstner KU, Hagedorn G, Koltzenburg C, Fabiana Kubke M, Mietchen D. Collaborative platforms for streamlining workows in Open Science Ceur Workshop Proceedings. 739.  0.32
2010 Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics (Oxford, England). 26: 2977-8. PMID 20959381 DOI: 10.1093/Bioinformatics/Btq536  1
2008 Foerstner KU, Doerks T, Muller J, Raes J, Bork P. A nitrile hydratase in the eukaryote Monosiga brevicollis. Plos One. 3: e3976. PMID 19096720 DOI: 10.1371/Journal.Pone.0003976  1
2008 Foerstner KU, Doerks T, Creevey CJ, Doerks A, Bork P. A computational screen for type I polyketide synthases in metagenomics shotgun data. Plos One. 3: e3515. PMID 18953415 DOI: 10.1371/Journal.Pone.0003515  1
2008 Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P. A molecular study of microbe transfer between distant environments. Plos One. 3: e2607. PMID 18612393 DOI: 10.1371/Journal.Pone.0002607  1
2007 Raes J, Foerstner KU, Bork P. Get the most out of your metagenome: computational analysis of environmental sequence data. Current Opinion in Microbiology. 10: 490-8. PMID 17936679 DOI: 10.1016/J.Mib.2007.09.001  1
2007 Danckwardt S, Kaufmann I, Gentzel M, Foerstner KU, Gantzert AS, Gehring NH, Neu-Yilik G, Bork P, Keller W, Wilm M, Hentze MW, Kulozik AE. Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals. The Embo Journal. 26: 2658-69. PMID 17464285 DOI: 10.1038/Sj.Emboj.7601699  1
2006 Pané-Farré J, Jonas B, Förstner K, Engelmann S, Hecker M. The σ<sup>B</sup> regulon in Staphylococcus aureus and its regulation International Journal of Medical Microbiology. 296: 237-258. PMID 16644280 DOI: 10.1016/j.ijmm.2005.11.011  0.32
2006 Foerstner KU, von Mering C, Bork P. Comparative analysis of environmental sequences: potential and challenges. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 519-23. PMID 16524840 DOI: 10.1098/Rstb.2005.1809  1
2005 Foerstner KU, von Mering C, Hooper SD, Bork P. Environments shape the nucleotide composition of genomes. Embo Reports. 6: 1208-13. PMID 16200051 DOI: 10.1038/Sj.Embor.7400538  1
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