Konrad Ulrich Förstner, Ph.D. - Publications

2011-2013 IMIB/ZINF University of Würzburg, Germany 
 2013- Core Unit Systems Medicine University of Würzburg, Germany 
Systems biology, Infection research, Bioinformatics, RNA-regulation

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Sass AM, Van Acker H, Förstner KU, Van Nieuwerburgh F, Deforce D, Vogel J, Coenye T. Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315. Bmc Genomics. 16: 775. PMID 26462475 DOI: 10.1186/s12864-015-1993-3  0.64
2015 Papenfort K, Förstner KU, Cong JP, Sharma CM, Bassler BL. Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proceedings of the National Academy of Sciences of the United States of America. 112: E766-75. PMID 25646441 DOI: 10.1073/pnas.1500203112  0.64
2015 Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, et al. Ten simple rules for organizing an unconference. Plos Computational Biology. 11: e1003905. PMID 25633715 DOI: 10.1371/journal.pcbi.1003905  0.56
2015 Thomason MK, Bischler T, Eisenbart SK, Förstner KU, Zhang A, Herbig A, Nieselt K, Sharma CM, Storz G. Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli. Journal of Bacteriology. 197: 18-28. PMID 25266388 DOI: 10.1128/JB.02096-14  0.64
2014 Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, et al. An open science peer review oath. F1000research. 3: 271. PMID 25653839 DOI: 10.12688/f1000research.5686.2  0.56
2014 Boesler B, Meier D, Förstner KU, Friedrich M, Hammann C, Sharma CM, Nellen W. Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1. The Journal of Biological Chemistry. 289: 35124-38. PMID 25352599 DOI: 10.1074/jbc.M114.612663  0.64
2014 Möller P, Overlöper A, Förstner KU, Wen TN, Sharma CM, Lai EM, Narberhaus F. Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens. Plos One. 9: e110427. PMID 25330313 DOI: 10.1371/journal.pone.0110427  0.64
2014 Koch G, Yepes A, Förstner KU, Wermser C, Stengel ST, Modamio J, Ohlsen K, Foster KR, Lopez D. Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition. Cell. 158: 1060-71. PMID 25171407 DOI: 10.1016/j.cell.2014.06.046  0.64
2014 Förstner KU, Vogel J, Sharma CM. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data. Bioinformatics (Oxford, England). 30: 3421-3. PMID 25123900 DOI: 10.1093/bioinformatics/btu533  0.64
2014 Krysciak D, Grote J, Rodriguez Orbegoso M, Utpatel C, Förstner KU, Li L, Schmeisser C, Krishnan HB, Streit WR. RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant. Applied and Environmental Microbiology. 80: 5655-71. PMID 25002423 DOI: 10.1128/AEM.01835-14  0.64
2014 Rische-Grahl T, Weber L, Remes B, Förstner KU, Klug G. RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides. Rna Biology. 11: 855-64. PMID 24922065 DOI: 10.4161/rna.29440  0.64
2014 Remes B, Berghoff BA, Förstner KU, Klug G. Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides Bmc Genomics. 15. DOI: 10.1186/1471-2164-15-794  0.64
2014 Maudet C, Mano M, Sunkavalli U, Sharan M, Giacca M, Förstner KU, Eulalio A. Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection Nature Communications. 5. DOI: 10.1038/ncomms5718  0.64
2013 Müller S, Windhof IM, Maximov V, Jurkowski T, Jeltsch A, Förstner KU, Sharma CM, Gräf R, Nellen W. Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA). Nucleic Acids Research. 41: 8615-27. PMID 23877245 DOI: 10.1093/nar/gkt634  0.64
2013 Berghoff BA, Konzer A, Mank NN, Looso M, Rische T, Förstner KU, Krüger M, Klug G. Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses. Plos Genetics. 9: e1003576. PMID 23818867 DOI: 10.1371/journal.pgen.1003576  0.64
2013 Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM. High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates Plos Genetics. 9. PMID 23696746 DOI: 10.1371/journal.pgen.1003495  0.64
2012 Roscetto E, Angrisano T, Costa V, Casalino M, Förstner KU, Sharma CM, Di Nocera PP, De Gregorio E. Functional characterization of the RNA Chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia Journal of Bacteriology. 194: 5864-5874. PMID 22923593 DOI: 10.1128/JB.00746-12  0.64
2012 Zhelyazkova P, Sharma CM, Förstner KU, Liere K, Vogel J, Börner T. The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. The Plant Cell. 24: 123-36. PMID 22267485 DOI: 10.1105/tpc.111.089441  0.64
2011 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/nature09944  1
2011 Mietchen D, Hagedorn G, Förstner KU, Kubke MF, Koltzenburg C, Hahnel M, Penev L. Wikis in scholarly publishing Information Services and Use. 31: 53-59. DOI: 10.3233/ISU-2011-0621  0.64
2011 Förstner KU, Hagedorn G, Koltzenburg C, Fabiana Kubke M, Mietchen D. Collaborative platforms for streamlining workows in Open Science Ceur Workshop Proceedings. 739.  0.64
2010 Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics (Oxford, England). 26: 2977-8. PMID 20959381 DOI: 10.1093/bioinformatics/btq536  1
2008 Foerstner KU, Doerks T, Muller J, Raes J, Bork P. A nitrile hydratase in the eukaryote Monosiga brevicollis. Plos One. 3: e3976. PMID 19096720 DOI: 10.1371/journal.pone.0003976  1
2008 Foerstner KU, Doerks T, Creevey CJ, Doerks A, Bork P. A computational screen for type I polyketide synthases in metagenomics shotgun data. Plos One. 3: e3515. PMID 18953415 DOI: 10.1371/journal.pone.0003515  1
2008 Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P. A molecular study of microbe transfer between distant environments. Plos One. 3: e2607. PMID 18612393 DOI: 10.1371/journal.pone.0002607  1
2007 Raes J, Foerstner KU, Bork P. Get the most out of your metagenome: computational analysis of environmental sequence data. Current Opinion in Microbiology. 10: 490-8. PMID 17936679 DOI: 10.1016/j.mib.2007.09.001  1
2007 Danckwardt S, Kaufmann I, Gentzel M, Foerstner KU, Gantzert AS, Gehring NH, Neu-Yilik G, Bork P, Keller W, Wilm M, Hentze MW, Kulozik AE. Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals. The Embo Journal. 26: 2658-69. PMID 17464285 DOI: 10.1038/sj.emboj.7601699  1
2006 Foerstner KU, von Mering C, Bork P. Comparative analysis of environmental sequences: potential and challenges. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 519-23. PMID 16524840 DOI: 10.1098/rstb.2005.1809  1
2005 Foerstner KU, von Mering C, Hooper SD, Bork P. Environments shape the nucleotide composition of genomes. Embo Reports. 6: 1208-13. PMID 16200051 DOI: 10.1038/sj.embor.7400538  1
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