| Year |
Citation |
Score |
| 2020 |
Hör J, Di Giorgio S, Gerovac M, Venturini E, Förstner KU, Vogel J. Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli. Nucleic Acids Research. 48: 9301-9319. PMID 32813020 DOI: 10.1093/nar/gkaa676 |
0.386 |
|
| 2020 |
Hoyos M, Huber M, Förstner KU, Papenfort K. Gene autoregulation by 3' UTR-derived bacterial small RNAs. Elife. 9. PMID 32744240 DOI: 10.7554/eLife.58836 |
0.416 |
|
| 2020 |
Hör J, Garriss G, Di Giorgio S, Hack LM, Vanselow JT, Förstner KU, Schlosser A, Henriques-Normark B, Vogel J. Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control. The Embo Journal. 39: e103852. PMID 32227509 DOI: 10.15252/embj.2019103852 |
0.411 |
|
| 2019 |
Peschek N, Hoyos M, Herzog R, Förstner KU, Papenfort K. A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria. The Embo Journal. 38: e101650. PMID 31313835 DOI: 10.15252/embj.2019101650 |
0.323 |
|
| 2019 |
Laass S, Monzon VA, Kliemt J, Hammelmann M, Pfeiffer F, Förstner KU, Soppa J. Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq. Plos One. 14: e0215986. PMID 31039177 DOI: 10.1371/journal.pone.0215986 |
0.428 |
|
| 2019 |
Möller P, Busch P, Sauerbrei B, Kraus A, Förstner KU, Wen TN, Overlöper A, Lai EM, Narberhaus F. The RNase YbeY is vital for ribosome maturation, stress resistance and virulence of the natural genetic engineer . Journal of Bacteriology. PMID 30885931 DOI: 10.1128/JB.00730-18 |
0.35 |
|
| 2019 |
Lerch MF, Schoenfelder SMK, Marincola G, Wencker FDR, Eckart M, Förstner KU, Sharma CM, Thormann KM, Kucklick M, Engelmann S, Ziebuhr W. A non-coding RNA from the intercellular adhesin (ica) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesin (PIA)-mediated biofilm formation. Molecular Microbiology. PMID 30873665 DOI: 10.1111/mmi.14238 |
0.319 |
|
| 2019 |
Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J. The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium. Mbio. 10. PMID 30602583 DOI: 10.1128/Mbio.02504-18 |
0.417 |
|
| 2019 |
Nickel L, Ulbricht A, Alkhnbashi OS, Förstner KU, Cassidy L, Weidenbach K, Backofen R, Schmitz RA. Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1. Rna Biology. 16: 492-503. PMID 30153081 DOI: 10.1080/15476286.2018.1514234 |
0.35 |
|
| 2018 |
Förstner KU, Reuscher CM, Haberzettl K, Weber L, Klug G. RNase E cleavage shapes the transcriptome of and strongly impacts phototrophic growth. Life Science Alliance. 1: e201800080. PMID 30456366 DOI: 10.26508/lsa.201800080 |
0.367 |
|
| 2018 |
Yu SH, Vogel J, Förstner KU. ANNOgesic: A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes. Gigascience. PMID 30169674 DOI: 10.1093/Gigascience/Giy096 |
0.522 |
|
| 2018 |
Fröhlich KS, Förstner KU, Gitai Z. Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus. Nucleic Acids Research. PMID 30165530 DOI: 10.1093/Nar/Gky765 |
0.42 |
|
| 2018 |
García-Romero I, Förstner KU, Santero E, Floriano B. SuhB, a small non-coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFA. Environmental Microbiology. 20: 3671-3683. PMID 30033661 DOI: 10.1111/1462-2920.14360 |
0.308 |
|
| 2018 |
Li L, Förstner KU, Chao Y. Computational Analysis of RNA-Protein Interactions via Deep Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1751: 171-182. PMID 29508297 DOI: 10.1007/978-1-4939-7710-9_12 |
0.476 |
|
| 2017 |
Wedel C, Förstner KU, Derr R, Siegel TN. GT-rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes. The Embo Journal. 36: 2581-2594. PMID 28701485 DOI: 10.15252/embj.201695323 |
0.363 |
|
| 2017 |
Bauer JS, Fillinger S, Förstner K, Herbig A, Jones AC, Flinspach K, Sharma C, Gross H, Nieselt K, Apel AK. dRNA-seq Transcriptional Profiling of the FK506 Biosynthetic Gene Cluster in Streptomyces tsukubaensis NRRL18488 and General Analysis of the Transcriptome. Rna Biology. 0. PMID 28665778 DOI: 10.1080/15476286.2017.1341020 |
0.317 |
|
| 2017 |
Remes B, Rische-Grahl T, Müller KMH, Förstner KU, Yu SH, Weber L, Jäger A, Peuser V, Klug G. An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides. Journal of Bacteriology. 199. PMID 28507242 DOI: 10.1128/Jb.00249-17 |
0.364 |
|
| 2017 |
Sharan M, Förstner KU, Eulalio A, Vogel J. APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. Nucleic Acids Research. PMID 28334975 DOI: 10.1093/Nar/Gkx137 |
0.562 |
|
| 2017 |
Lavysh D, Sokolova M, Slashcheva M, Förstner KU, Severinov K. Transcription Profiling of Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases. Mbio. 8. PMID 28196958 DOI: 10.1128/mBio.02041-16 |
0.371 |
|
| 2017 |
Chao Y, Li L, Girodat D, Förstner KU, Said N, Corcoran C, Śmiga M, Papenfort K, Reinhardt R, Wieden HJ, Luisi BF, Vogel J. In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell. 65: 39-51. PMID 28061332 DOI: 10.1016/J.Molcel.2016.11.002 |
0.459 |
|
| 2016 |
Berger P, Knödler M, Förstner KU, Berger M, Bertling C, Sharma CM, Vogel J, Karch H, Dobrindt U, Mellmann A. The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation. Scientific Reports. 6: 35307. PMID 27748404 DOI: 10.1038/srep35307 |
0.38 |
|
| 2016 |
Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J. Grad-seq guides the discovery of ProQ as a major small RNA-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 113: 11591-11596. PMID 27671629 DOI: 10.1073/pnas.1609981113 |
0.45 |
|
| 2016 |
Babski J, Haas KA, Näther-Schindler D, Pfeiffer F, Förstner KU, Hammelmann M, Hilker R, Becker A, Sharma CM, Marchfelder A, Soppa J. Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq). Bmc Genomics. 17: 629. PMID 27519343 DOI: 10.1186/s12864-016-2920-y |
0.41 |
|
| 2016 |
Dingemans J, Monsieurs P, Yu SH, Crabbé A, Förstner KU, Malfroot A, Cornelis P, Van Houdt R. Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung. Mbio. 7. PMID 27486191 DOI: 10.1128/Mbio.00813-16 |
0.364 |
|
| 2016 |
Čuklina J, Hahn J, Imakaev M, Omasits U, Förstner KU, Ljubimov N, Goebel M, Pessi G, Fischer HM, Ahrens CH, Gelfand MS, Evguenieva-Hackenberg E. Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation. Bmc Genomics. 17: 302. PMID 27107716 DOI: 10.1186/s12864-016-2602-9 |
0.362 |
|
| 2016 |
Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J. Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature. 529: 496-501. PMID 26789254 DOI: 10.1038/Nature16547 |
0.401 |
|
| 2015 |
Fan B, Li L, Chao Y, Förstner K, Vogel J, Borriss R, Wu XQ. dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42. Plos One. 10: e0142002. PMID 26540162 DOI: 10.1371/Journal.Pone.0142002 |
0.455 |
|
| 2015 |
Papenfort K, Förstner KU, Cong JP, Sharma CM, Bassler BL. Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proceedings of the National Academy of Sciences of the United States of America. 112: E766-75. PMID 25646441 DOI: 10.1073/Pnas.1500203112 |
0.439 |
|
| 2015 |
Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, et al. Ten simple rules for organizing an unconference. Plos Computational Biology. 11: e1003905. PMID 25633715 DOI: 10.1371/Journal.Pcbi.1003905 |
0.449 |
|
| 2015 |
Thomason MK, Bischler T, Eisenbart SK, Förstner KU, Zhang A, Herbig A, Nieselt K, Sharma CM, Storz G. Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli. Journal of Bacteriology. 197: 18-28. PMID 25266388 DOI: 10.1128/Jb.02096-14 |
0.554 |
|
| 2014 |
Möller P, Overlöper A, Förstner KU, Wen TN, Sharma CM, Lai EM, Narberhaus F. Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens. Plos One. 9: e110427. PMID 25330313 DOI: 10.1371/journal.pone.0110427 |
0.355 |
|
| 2014 |
Jäger D, Förstner KU, Sharma CM, Santangelo TJ, Reeve JN. Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis. Bmc Genomics. 15: 684. PMID 25127548 DOI: 10.1186/1471-2164-15-684 |
0.374 |
|
| 2014 |
Förstner KU, Vogel J, Sharma CM. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data. Bioinformatics (Oxford, England). 30: 3421-3. PMID 25123900 DOI: 10.1093/bioinformatics/btu533 |
0.402 |
|
| 2014 |
Reynolds D, Cliffe L, Förstner KU, Hon CC, Siegel TN, Sabatini R. Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei Nucleic Acids Research. 42: 9717-9729. PMID 25104019 DOI: 10.1093/nar/gku714 |
0.303 |
|
| 2014 |
Krysciak D, Grote J, Rodriguez Orbegoso M, Utpatel C, Förstner KU, Li L, Schmeisser C, Krishnan HB, Streit WR. RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant. Applied and Environmental Microbiology. 80: 5655-71. PMID 25002423 DOI: 10.1128/Aem.01835-14 |
0.41 |
|
| 2014 |
Rische-Grahl T, Weber L, Remes B, Förstner KU, Klug G. RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides. Rna Biology. 11: 855-64. PMID 24922065 DOI: 10.4161/rna.29440 |
0.419 |
|
| 2014 |
Maudet C, Mano M, Sunkavalli U, Sharan M, Giacca M, Förstner KU, Eulalio A. Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection Nature Communications. 5. DOI: 10.1038/ncomms5718 |
0.441 |
|
| 2013 |
Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM. High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates Plos Genetics. 9. PMID 23696746 DOI: 10.1371/journal.pgen.1003495 |
0.372 |
|
| 2012 |
Roscetto E, Angrisano T, Costa V, Casalino M, Förstner KU, Sharma CM, Di Nocera PP, De Gregorio E. Functional characterization of the RNA Chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia Journal of Bacteriology. 194: 5864-5874. PMID 22923593 DOI: 10.1128/JB.00746-12 |
0.402 |
|
| 2012 |
Zhelyazkova P, Sharma CM, Förstner KU, Liere K, Vogel J, Börner T. The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. The Plant Cell. 24: 123-36. PMID 22267485 DOI: 10.1105/Tpc.111.089441 |
0.446 |
|
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