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Jeroen Raes - Publications

Affiliations: 
VIB Department of Molecular and Cellular  Vrije Universiteit Brussel, Elsene, Brussels Hoofdstedelijk Gewest, Belgium 
Website:
http://www.vib.be/Research/EN/Research+Departments/Department+of+Molecular+and+Cellular+Interactions/Jeroen+Raes/
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Year Citation  Score
2023 Caenepeel C, Falony G, Machiels K, Verstockt B, Goncalves PJ, Ferrante M, Sabino J, Raes J, Vieira-Silva S, Vermeire S. Dysbiosis and Associated Stool Features Improve Prediction of Response to Biological Therapy in Inflammatory Bowel Disease. Gastroenterology. PMID 38096956 DOI: 10.1053/j.gastro.2023.11.304  0.593
2023 Andrikopoulos P, Aron-Wisnewsky J, Chakaroun R, Myridakis A, Forslund SK, Nielsen T, Adriouch S, Holmes B, Chilloux J, Vieira-Silva S, Falony G, Salem JE, Andreelli F, Belda E, Kieswich J, ... ... Raes J, et al. Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide. Nature Communications. 14: 5843. PMID 37730687 DOI: 10.1038/s41467-023-39824-4  0.783
2023 Poppe J, Vieira-Silva S, Raes J, Verbeke K, Falony G. Systematic optimization of fermentation conditions for fermentations with fecal inocula. Frontiers in Microbiology. 14: 1198903. PMID 37555071 DOI: 10.3389/fmicb.2023.1198903  0.607
2023 Fan Y, Støving RK, Berreira Ibraim S, Hyötyläinen T, Thirion F, Arora T, Lyu L, Stankevic E, Hansen TH, Déchelotte P, Sinioja T, Ragnarsdottir O, Pons N, Galleron N, Quinquis B, ... ... Raes J, et al. The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice. Nature Microbiology. 8: 787-802. PMID 37069399 DOI: 10.1038/s41564-023-01355-5  0.646
2023 Jansen D, Falony G, Vieira-Silva S, Simsek C, Marcelis T, Caenepeel C, Machiels K, Raes J, Vermeire S, Matthijnssens J. Community Types Of The Human Gut Virome Are Associated With Endoscopic Outcome In Ulcerative Colitis. Journal of Crohn's & Colitis. PMID 37052201 DOI: 10.1093/ecco-jcc/jjad061  0.617
2023 Goosen C, Proost S, Baumgartner J, Mallick K, Tito RY, Barnabas SL, Cotton MF, Zimmermann MB, Raes J, Blaauw R. Associations of HIV and iron status with gut microbiota composition, gut inflammation, and gut integrity in South African school-age children: A two-way factorial case-control study. Journal of Human Nutrition and Dietetics : the Official Journal of the British Dietetic Association. PMID 36992541 DOI: 10.1111/jhn.13171  0.64
2023 Devolder L, Pauwels A, Van Remoortel A, Falony G, Vieira-Silva S, Nagels G, De Keyser J, Raes J, D'Hooghe MB. Gut microbiome composition is associated with long-term disability worsening in multiple sclerosis. Gut Microbes. 15: 2180316. PMID 36803643 DOI: 10.1080/19490976.2023.2180316  0.581
2023 Kennedy KM, de Goffau MC, Perez-Muñoz ME, Arrieta MC, Bäckhed F, Bork P, Braun T, Bushman FD, Dore J, de Vos WM, Earl AM, Eisen JA, Elovitz MA, Ganal-Vonarburg SC, Gänzle MG, ... ... Raes J, et al. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature. 613: 639-649. PMID 36697862 DOI: 10.1038/s41586-022-05546-8  0.578
2022 van de Velde CC, Joseph C, Biclot A, Huys GRB, Pinheiro VB, Bernaerts K, Raes J, Faust K. Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification. Isme Communications. 2: 40. PMID 37938658 DOI: 10.1038/s43705-022-00123-6  0.551
2022 Si J, Vázquez-Castellanos JF, Gregory AC, Decommer L, Rymenans L, Proost S, Centelles Lodeiro J, Weger M, Notdurfter M, Leitner C, Santer P, Rungger G, Willeit J, Willeit P, Pechlaner R, ... ... Raes J, et al. Long-term life history predicts current gut microbiome in a population-based cohort study. Nature Aging. 2: 885-895. PMID 37118287 DOI: 10.1038/s43587-022-00286-w  0.665
2022 van de Velde C, Joseph C, Simoens K, Raes J, Bernaerts K, Faust K. Technical versus biological variability in a synthetic human gut community. Gut Microbes. 15: 2155019. PMID 36580382 DOI: 10.1080/19490976.2022.2155019  0.562
2022 Suriano F, Vieira-Silva S, Falony G, de Wouters d'Oplinter A, Paone P, Delzenne NM, Everard A, Raes J, Van Hul M, Cani PD. Fat and not sugar as the determining factor for gut microbiota changes, obesity, and related metabolic disorders in mice. American Journal of Physiology. Endocrinology and Metabolism. 324: E85-E96. PMID 36516223 DOI: 10.1152/ajpendo.00141.2022  0.593
2022 Procházková N, Falony G, Dragsted LO, Licht TR, Raes J, Roager HM. Advancing human gut microbiota research by considering gut transit time. Gut. PMID 36171079 DOI: 10.1136/gutjnl-2022-328166  0.62
2022 Biclot A, Huys GRB, Bacigalupe R, D'hoe K, Vandeputte D, Falony G, Tito RY, Raes J. Effect of cryopreservation medium conditions on growth and isolation of gut anaerobes from human faecal samples. Microbiome. 10: 80. PMID 35644616 DOI: 10.1186/s40168-022-01267-2  0.603
2022 Beller L, Deboutte W, Vieira-Silva S, Falony G, Tito RY, Rymenans L, Yinda CK, Vanmechelen B, Van Espen L, Jansen D, Shi C, Zeller M, Maes P, Faust K, Van Ranst M, ... Raes J, et al. The virota and its transkingdom interactions in the healthy infant gut. Proceedings of the National Academy of Sciences of the United States of America. 119: e2114619119. PMID 35320047 DOI: 10.1073/pnas.2114619119  0.689
2022 Ebrahim Z, Proost S, Tito RY, Raes J, Glorieux G, Moosa MR, Blaauw R. The Effect of ß-Glucan Prebiotic on Kidney Function, Uremic Toxins and Gut Microbiome in Stage 3 to 5 Chronic Kidney Disease (CKD) Predialysis Participants: A Randomized Controlled Trial. Nutrients. 14. PMID 35215453 DOI: 10.3390/nu14040805  0.665
2022 Fromentin S, Forslund SK, Chechi K, Aron-Wisnewsky J, Chakaroun R, Nielsen T, Tremaroli V, Ji B, Prifti E, Myridakis A, Chilloux J, Andrikopoulos P, Fan Y, Olanipekun MT, Alves R, ... ... Raes J, et al. Microbiome and metabolome features of the cardiometabolic disease spectrum. Nature Medicine. PMID 35177860 DOI: 10.1038/s41591-022-01688-4  0.782
2022 Belda E, Voland L, Tremaroli V, Falony G, Adriouch S, Assmann KE, Prifiti E, Aron-Wisnewsky J, Debédat J, Le Roy T, Nielsen T, Amouyal C, André S, Andreelli F, Blüher M, ... ... Raes J, et al. Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism. Gut. PMID 35017197 DOI: 10.1136/gutjnl-2021-325753  0.788
2022 Goosen C, Proost S, Tito RY, Baumgartner J, Barnabas SL, Cotton MF, Zimmermann MB, Raes J, Blaauw R. The effect of oral iron supplementation on the gut microbiota, gut inflammation, and iron status in iron-depleted South African school-age children with virally suppressed HIV and without HIV. European Journal of Nutrition. PMID 34997267 DOI: 10.1007/s00394-021-02793-9  0.624
2021 Röttjers L, Vandeputte D, Raes J, Faust K. Null-model-based network comparison reveals core associations. Isme Communications. 1: 36. PMID 37938641 DOI: 10.1038/s43705-021-00036-w  0.496
2021 Valles-Colomer M, Bacigalupe R, Vieira-Silva S, Suzuki S, Darzi Y, Tito RY, Yamada T, Segata N, Raes J, Falony G. Variation and transmission of the human gut microbiota across multiple familial generations. Nature Microbiology. PMID 34969979 DOI: 10.1038/s41564-021-01021-8  0.735
2021 Deutschmann IM, Lima-Mendez G, Krabberød AK, Raes J, Vallina SM, Faust K, Logares R. Correction to: Disentangling environmental effects in microbial association networks. Microbiome. 9: 245. PMID 34933691 DOI: 10.1186/s40168-021-01209-4  0.488
2021 Beller L, Deboutte W, Falony G, Vieira-Silva S, Tito RY, Valles-Colomer M, Rymenans L, Jansen D, Van Espen L, Papadaki MI, Shi C, Yinda CK, Zeller M, Faust K, Van Ranst M, ... Raes J, et al. Successional Stages in Infant Gut Microbiota Maturation. Mbio. 12: e0185721. PMID 34903050 DOI: 10.1128/mBio.01857-21  0.699
2021 Forslund SK, Chakaroun R, Zimmermann-Kogadeeva M, Markó L, Aron-Wisnewsky J, Nielsen T, Moitinho-Silva L, Schmidt TSB, Falony G, Vieira-Silva S, Adriouch S, Alves RJ, Assmann K, Bastard JP, Birkner T, ... ... Raes J, et al. Combinatorial, additive and dose-dependent drug-microbiome associations. Nature. 600: 500-505. PMID 34880489 DOI: 10.1038/s41586-021-04177-9  0.782
2021 Gryp T, Faust K, Van Biesen W, Huys GRB, Verbeke F, Speeckaert M, Raes J, Vaneechoutte M, Joossens M, Glorieux G. Gut Microbiome Profiling Uncovers a Lower Abundance of in Advanced Stages of Chronic Kidney Disease. Journal of Personalized Medicine. 11. PMID 34834470 DOI: 10.3390/jpm11111118  0.523
2021 Deutschmann IM, Lima-Mendez G, Krabberød AK, Raes J, Vallina SM, Faust K, Logares R. Disentangling environmental effects in microbial association networks. Microbiome. 9: 232. PMID 34823593 DOI: 10.1186/s40168-021-01141-7  0.518
2021 Vandeputte D, De Commer L, Tito RY, Kathagen G, Sabino J, Vermeire S, Faust K, Raes J. Temporal variability in quantitative human gut microbiome profiles and implications for clinical research. Nature Communications. 12: 6740. PMID 34795283 DOI: 10.1038/s41467-021-27098-7  0.558
2021 Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, ... ... Raes J, et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine. PMID 34789871 DOI: 10.1038/s41591-021-01552-x  0.735
2021 Steenackers N, Falony G, Augustijns P, Van der Schueren B, Vanuytsel T, Vieira-Silva S, Wauters L, Raes J, Matthys C. Specific contributions of segmental transit times to gut microbiota composition. Gut. PMID 34642242 DOI: 10.1136/gutjnl-2021-325916  0.579
2021 Pero-Gascon R, Hemeryck LY, Poma G, Falony G, Nawrot TS, Raes J, Vanhaecke L, De Boevre M, Covaci A, De Saeger S. FLEXiGUT: Rationale for exposomics associations with chronic low-grade gut inflammation. Environment International. 158: 106906. PMID 34607040 DOI: 10.1016/j.envint.2021.106906  0.604
2021 Suriano F, Vieira-Silva S, Falony G, Roumain M, Paquot A, Pelicaen R, Régnier M, Delzenne NM, Raes J, Muccioli GG, Van Hul M, Cani PD. Novel insights into the genetically obese (ob/ob) and diabetic (db/db) mice: two sides of the same coin. Microbiome. 9: 147. PMID 34183063 DOI: 10.1186/s40168-021-01097-8  0.707
2021 Lloréns-Rico V, Vieira-Silva S, Gonçalves PJ, Falony G, Raes J. Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases. Nature Communications. 12: 3562. PMID 34117246 DOI: 10.1038/s41467-021-23821-6  0.743
2021 Le Roy T, Moens de Hase E, Van Hul M, Paquot A, Pelicaen R, Régnier M, Depommier C, Druart C, Everard A, Maiter D, Delzenne NM, Bindels LB, de Barsy M, Loumaye A, Hermans MP, ... ... Raes J, et al. is a newly isolated human commensal bacterium preventing diet-induced obesity and metabolic disorders in mice. Gut. PMID 34108237 DOI: 10.1136/gutjnl-2020-323778  0.598
2021 Acinas SG, Sánchez P, Salazar G, Cornejo-Castillo FM, Sebastián M, Logares R, Royo-Llonch M, Paoli L, Sunagawa S, Hingamp P, Ogata H, Lima-Mendez G, Roux S, González JM, Arrieta JM, ... ... Raes J, et al. Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology. 4: 604. PMID 34021239 DOI: 10.1038/s42003-021-02112-2  0.574
2021 Brial F, Chilloux J, Nielsen T, Vieira-Silva S, Falony G, Andrikopoulos P, Olanipekun M, Hoyles L, Djouadi F, Neves AL, Rodriguez-Martinez A, Mouawad GI, Pons N, Forslund S, Le-Chatelier E, ... ... Raes J, et al. Human and preclinical studies of the host-gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health. Gut. PMID 33975870 DOI: 10.1136/gutjnl-2020-323314  0.788
2021 Kurilshikov A, Medina-Gomez C, Bacigalupe R, Radjabzadeh D, Wang J, Demirkan A, Le Roy CI, Raygoza Garay JA, Finnicum CT, Liu X, Zhernakova DV, Bonder MJ, Hansen TH, Frost F, Rühlemann MC, ... ... Raes J, et al. Large-scale association analyses identify host factors influencing human gut microbiome composition. Nature Genetics. PMID 33462485 DOI: 10.1038/s41588-020-00763-1  0.644
2021 Kurilshikov A, Medina-Gomez C, Bacigalupe R, Radjabzadeh D, Wang J, Demirkan A, Le Roy CI, Raygoza Garay JA, Finnicum CT, Liu X, Zhernakova DV, Bonder MJ, Hansen TH, Frost F, Rühlemann MC, ... ... Raes J, et al. Large-scale association analyses identify host factors influencing human gut microbiome composition. Nature Genetics. PMID 33462485 DOI: 10.1038/s41588-020-00763-1  0.644
2020 Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, ... ... Raes J, et al. Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology. Nature Communications. 11: 6448. PMID 33349634 DOI: 10.1038/s41467-020-20412-9  0.774
2020 Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, ... ... Raes J, et al. Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology. Nature Communications. 11: 5881. PMID 33208748 DOI: 10.1038/s41467-020-19589-w  0.798
2020 Souffriau J, Timmermans S, Vanderhaeghen T, Wallaeys C, Van Looveren K, Aelbrecht L, Dewaele S, Vandewalle J, Goossens E, Verbanck S, Boyen F, Eggermont M, De Commer L, De Rycke R, De Bruyne M, ... ... Raes J, et al. Zinc inhibits lethal inflammatory shock by preventing microbe-induced interferon signature in intestinal epithelium. Embo Molecular Medicine. e11917. PMID 32914580 DOI: 10.15252/Emmm.201911917  0.315
2020 Hughes DA, Bacigalupe R, Wang J, Rühlemann MC, Tito RY, Falony G, Joossens M, Vieira-Silva S, Henckaerts L, Rymenans L, Verspecht C, Ring S, Franke A, Wade KH, Timpson NJ, ... Raes J, et al. Genome-wide associations of human gut microbiome variation and implications for causal inference analyses. Nature Microbiology. PMID 32572223 DOI: 10.1038/S41564-020-0743-8  0.657
2020 Vieira-Silva S, Falony G, Belda E, Nielsen T, Aron-Wisnewsky J, Chakaroun R, Forslund SK, Assmann K, Valles-Colomer M, Nguyen TTD, Proost S, Prifti E, Tremaroli V, Pons N, Le Chatelier E, ... ... Raes J, et al. Statin therapy is associated with lower prevalence of gut microbiota dysbiosis. Nature. 581: 310-315. PMID 32433607 DOI: 10.1038/S41586-020-2269-X  0.78
2019 Park R, Dzialo MC, Spaepen S, Nsabimana D, Gielens K, Devriese H, Crauwels S, Tito RY, Raes J, Lievens B, Verstrepen KJ. Microbial communities of the house fly Musca domestica vary with geographical location and habitat. Microbiome. 7: 147. PMID 31699144 DOI: 10.1186/S40168-019-0748-9  0.413
2019 D'hoe K, Vet S, Faust K, Moens F, Falony G, Gonze D, Lloréns-Rico V, Gelens L, Danckaert J, De Vuyst L, Raes J. Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. Elife. 8. PMID 31682225 DOI: 10.7554/Elife.53217  0.709
2019 Vrancken G, Gregory AC, Huys GRB, Faust K, Raes J. Synthetic ecology of the human gut microbiota. Nature Reviews. Microbiology. PMID 31578461 DOI: 10.1038/S41579-019-0264-8  0.625
2019 Le Roy CI, Wells PM, Si J, Raes J, Bell JT, Spector TD. Red Wine Consumption Associated With Increased Gut Microbiota α-diversity in 3 Independent Cohorts. Gastroenterology. PMID 31472153 DOI: 10.1053/J.Gastro.2019.08.024  0.304
2019 Vázquez-Castellanos JF, Biclot A, Vrancken G, Huys GR, Raes J. Design of synthetic microbial consortia for gut microbiota modulation. Current Opinion in Pharmacology. 49: 52-59. PMID 31430629 DOI: 10.1016/J.Coph.2019.07.005  0.383
2019 Aden K, Rehman A, Waschina S, Pan WH, Walker A, Lucio M, Nunez AM, Bharti R, Zimmerman J, Bethge J, Schulte B, Schulte D, Franke A, Nikolaus S, Schroeder JO, ... ... Raes J, et al. Metabolic Functions of Gut Microbes Associate With Efficacy of Tumor Necrosis Factor Antagonists in Patients with Inflammatory Bowel Diseases. Gastroenterology. PMID 31326413 DOI: 10.1053/J.Gastro.2019.07.025  0.334
2019 Depommier C, Everard A, Druart C, Plovier H, Van Hul M, Vieira-Silva S, Falony G, Raes J, Maiter D, Delzenne NM, de Barsy M, Loumaye A, Hermans MP, Thissen JP, de Vos WM, et al. Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study. Nature Medicine. PMID 31263284 DOI: 10.1038/S41591-019-0495-2  0.625
2019 Vieira-Silva S, Sabino J, Valles-Colomer M, Falony G, Kathagen G, Caenepeel C, Cleynen I, van der Merwe S, Vermeire S, Raes J. Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses. Nature Microbiology. PMID 31209308 DOI: 10.1038/S41564-019-0483-9  0.658
2019 Lloréns-Rico V, Raes J. Tracking humans and microbes. Nature. 569: 632-633. PMID 31142867 DOI: 10.1038/D41586-019-01591-Y  0.309
2019 Falony G, Vandeputte D, Caenepeel C, Vieira-Silva S, Daryoush T, Vermeire S, Raes J. The human microbiome in health and disease: hype or hope. Acta Clinica Belgica. 1-12. PMID 30810508 DOI: 10.1080/17843286.2019.1583782  0.625
2019 Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira-Silva S, Raes J. The neuroactive potential of the human gut microbiota in quality of life and depression. Nature Microbiology. PMID 30718848 DOI: 10.1038/S41564-018-0337-X  0.646
2019 De Paepe K, Verspreet J, Rezaei MN, Hidalgo Martinez S, Meysman F, Van de Walle D, Dewettinck K, Raes J, Courtin C, Van de Wiele T. Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota. Peerj. 7: e6293. PMID 30701133 DOI: 10.7717/Peerj.6293  0.37
2019 Valles-Colomer M, Falony G, Vieira-Silva S, Raes J. Practical guidelines for gut microbiome analysis in microbiota-gut-brain axis research Behavioral and Brain Sciences. 42. DOI: 10.1017/S0140525X18002881  0.621
2018 Joossens M, Faust K, Gryp T, Nguyen ATL, Wang J, Eloot S, Schepers E, Dhondt A, Pletinck A, Vieira-Silva S, Falony G, Vaneechoutte M, Vanholder R, Van Biesen W, Huys GRB, ... Raes J, et al. Gut microbiota dynamics and uraemic toxins: one size does not fit all. Gut. PMID 30464044 DOI: 10.1136/Gutjnl-2018-317561  0.746
2018 Hansen LBS, Roager HM, Søndertoft NB, Gøbel RJ, Kristensen M, Vallès-Colomer M, Vieira-Silva S, Ibrügger S, Lind MV, Mærkedahl RB, Bahl MI, Madsen ML, Havelund J, Falony G, Tetens I, ... ... Raes J, et al. A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults. Nature Communications. 9: 4630. PMID 30425247 DOI: 10.1038/S41467-018-07019-X  0.598
2018 Boesmans L, Valles-Colomer M, Wang J, Eeckhaut V, Falony G, Ducatelle R, Van Immerseel F, Raes J, Verbeke K. Butyrate Producers as Potential Next-Generation Probiotics: Safety Assessment of the Administration of to Healthy Volunteers. Msystems. 3. PMID 30417112 DOI: 10.1128/mSystems.00094-18  0.598
2018 D'hoe K, Vet S, Faust K, Moens F, Falony G, Gonze D, Lloréns-Rico V, Gelens L, Danckaert J, De Vuyst L, Raes J. Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. Elife. 7. PMID 30322445 DOI: 10.7554/Elife.37090  0.72
2018 He Y, Wu W, Wu S, Zheng HM, Li P, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, ... ... Raes J, et al. Linking gut microbiota, metabolic syndrome and economic status based on a population-level analysis. Microbiome. 6: 172. PMID 30249275 DOI: 10.1186/S40168-018-0557-6  0.35
2018 Tito RY, Chaffron S, Caenepeel C, Lima-Mendez G, Wang J, Vieira-Silva S, Falony G, Hildebrand F, Darzi Y, Rymenans L, Verspecht C, Bork P, Vermeire S, Joossens M, Raes J. Population-level analysis of subtype prevalence and variation in the human gut microbiota. Gut. PMID 30171064 DOI: 10.1136/Gutjnl-2018-316106  0.788
2018 He Y, Wu W, Zheng HM, Li P, McDonald D, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, ... ... Raes J, et al. Regional variation limits applications of healthy gut microbiome reference ranges and disease models. Nature Medicine. PMID 30150716 DOI: 10.1038/S41591-018-0164-X  0.347
2018 De Paepe K, Verspreet J, Verbeke K, Raes J, Courtin CM, Van de Wiele T. Introducing insoluble wheat bran as a gut microbiota niche in an in vitro dynamic gut model stimulates propionate and butyrate production and induces colon region specific shifts in the luminal and mucosal microbial community. Environmental Microbiology. PMID 30126070 DOI: 10.1111/1462-2920.14381  0.406
2018 Huys GR, Raes J. Go with the flow or solitary confinement: a look inside the single-cell toolbox for isolation of rare and uncultured microbes. Current Opinion in Microbiology. 44: 1-8. PMID 29908491 DOI: 10.1016/J.Mib.2018.05.002  0.343
2018 Wang J, Kurilshikov A, Radjabzadeh D, Turpin W, Croitoru K, Bonder MJ, Jackson MA, Medina-Gomez C, Frost F, Homuth G, Rühlemann M, Hughes D, Kim HN, Spector TD, ... ... Raes J, et al. Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative. Microbiome. 6: 101. PMID 29880062 DOI: 10.1186/S40168-018-0479-3  0.379
2018 Falony G, Vieira-Silva S, Raes J. Richness and ecosystem development across faecal snapshots of the gut microbiota. Nature Microbiology. 3: 526-528. PMID 29693658 DOI: 10.1038/S41564-018-0143-5  0.663
2018 Schmidt TSB, Raes J, Bork P. The Human Gut Microbiome: From Association to Modulation. Cell. 172: 1198-1215. PMID 29522742 DOI: 10.1016/J.Cell.2018.02.044  0.591
2018 Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Raes J, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X  0.783
2018 D'hoe K, Conterno L, Fava F, Falony G, Vieira-Silva S, Vermeiren J, Tuohy K, Raes J. Prebiotic Wheat Bran Fractions Induce Specific Microbiota Changes. Frontiers in Microbiology. 9: 31. PMID 29416529 DOI: 10.3389/Fmicb.2018.00031  0.642
2018 Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, ... ... Raes J, et al. A global ocean atlas of eukaryotic genes. Nature Communications. 9: 373. PMID 29371626 DOI: 10.1038/S41467-017-02342-1  0.612
2018 Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Raes J, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8  0.765
2018 Caenepeel C, Vieira-Silva S, Sabino J, Machiels K, Falony G, Ferrante M, Van Assche G, Raes J, Vermeire S. P854 Quantitative microbiome profiling changes the described dysbiotic state in inflammatory bowel disease Journal of Crohn's and Colitis. 12: S548-S549. DOI: 10.1093/Ecco-Jcc/Jjx180.981  0.6
2017 Vandeputte D, Kathagen G, D'hoe K, Vieira-Silva S, Valles-Colomer M, Sabino J, Wang J, Tito RY, De Commer L, Darzi Y, Vermeire S, Falony G, Raes J. Quantitative microbiome profiling links gut community variation to microbial load. Nature. PMID 29143816 DOI: 10.1038/Nature24460  0.696
2017 Raes J. Microbiology: Crowdsourcing Earth's microbes. Nature. PMID 29088699 DOI: 10.1038/Nature24756  0.304
2017 Vandeputte D, Tito RY, Vanleeuwen R, Falony G, Raes J. Practical considerations for large-scale gut microbiome studies. Fems Microbiology Reviews. 41: S154-S167. PMID 28830090 DOI: 10.1093/Femsre/Fux027  0.636
2017 Mamantopoulos M, Ronchi F, Van Hauwermeiren F, Vieira-Silva S, Yilmaz B, Martens L, Saeys Y, Drexler SK, Yazdi AS, Raes J, Lamkanfi M, McCoy KD, Wullaert A. Nlrp6- and ASC-Dependent Inflammasomes Do Not Shape the Commensal Gut Microbiota Composition. Immunity. PMID 28801232 DOI: 10.1016/J.Immuni.2017.07.011  0.365
2017 Sommer F, Anderson JM, Bharti R, Raes J, Rosenstiel P. The resilience of the intestinal microbiota influences health and disease. Nature Reviews. Microbiology. PMID 28626231 DOI: 10.1038/Nrmicro.2017.58  0.405
2017 Andersen V, Holmskov U, Sørensen SB, Jawhara M, Andersen KW, Bygum A, Hvid L, Grauslund J, Wied J, Glerup H, Fredberg U, Villadsen JA, Kjær SG, Fallingborg J, Moghadd SAGR, ... ... Raes J, et al. A Proposal for a Study on Treatment Selection and Lifestyle Recommendations in Chronic Inflammatory Diseases: A Danish Multidisciplinary Collaboration on Prognostic Factors and Personalised Medicine. Nutrients. 9. PMID 28505128 DOI: 10.3390/Nu9050499  0.301
2017 Gonze D, Lahti L, Raes J, Faust K. Multi-stability and the origin of microbial community types. The Isme Journal. PMID 28475180 DOI: 10.1038/Ismej.2017.60  0.571
2017 Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Pedersen HK, Arumugam M, Kristiansen K, Voigt AY, Vestergaard H, Hercog R, ... ... Raes J, et al. Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. 545: 116. PMID 28470190 DOI: 10.1038/Nature22318  0.765
2017 Mysara M, Njima M, Leys N, Raes J, Monsieurs P. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data. Gigascience. 6: 1-10. PMID 28369460 DOI: 10.1093/Gigascience/Giw017  0.323
2017 Mysara M, Vandamme P, Props R, Kerckhof FM, Leys N, Boon N, Raes J, Monsieurs P. Reconciliation between Operational Taxonomic Units and Species Boundaries. Fems Microbiology Ecology. PMID 28334218 DOI: 10.1093/Femsec/Fix029  0.331
2017 Vandeputte D, Falony G, Vieira-Silva S, Wang J, Sailer M, Theis S, Verbeke K, Raes J. Prebiotic inulin-type fructans induce specific changes in the human gut microbiota. Gut. PMID 28213610 DOI: 10.1136/Gutjnl-2016-313271  0.658
2017 Vandeputte D, Falony G, D'hoe K, Vieira-Silva S, Raes J. Water activity does not shape the microbiota in the human colon. Gut. PMID 28062523 DOI: 10.1136/Gutjnl-2016-313530  0.646
2017 Vancamelbeke M, Sabino J, Deroover L, Vandermeulen G, Luypaerts A, Ferrante M, Falony G, Vieira-Silva S, Verbeke K, Raes J, Cleynen I, Vermeire S. P774 Metagenomics and metabolomics of patients with inflammatory bowel disease and their unaffected relatives Journal of Crohn's and Colitis. 11: S476-S477. DOI: 10.1093/Ecco-Jcc/Jjx002.895  0.602
2017 Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ferrante M, Van Assche G, Van Der Merwe S, Matthys C, Raes J, Vermeire S. P767 The FIT trial: anti-inflammatory dietary intervention effects on the intestinal microbiota Journal of Crohn's and Colitis. 11: S473-S473. DOI: 10.1093/Ecco-Jcc/Jjx002.888  0.622
2017 Vancamelbeke M, Sabino J, Deroover L, Vandermeulen G, Luypaerts A, Ferrante M, Falony G, Vieira-Silva S, Verbeke K, Raes J, Cleynen I, Vermeire S. Profiling of the Fecal Microbiota and Metabolome in Patients with Inflammatory Bowel Disease and their Unaffected Relatives Gastroenterology. 152: S991. DOI: 10.1016/S0016-5085(17)33359-0  0.624
2017 Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ferrante M, Van Assche GA, Van Der Merwe S, Matthys C, Raes J, Vermeire S. Therapeutic Manipulation of the Gut Microbiota Through Diet to Reduce Intestinal Inflammation: Results from the FIT Trial Gastroenterology. 152: S1. DOI: 10.1016/S0016-5085(17)30385-2  0.627
2017 Wang H, Wei Z, Mei L, Gu J, Yin S, Faust K, Raes J, Deng Y, Wang Y, Shen Q, Yin S. Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil Soil Biology and Biochemistry. 105: 227-235. DOI: 10.1016/J.Soilbio.2016.11.029  0.595
2016 Pérez-Valera E, Goberna M, Faust K, Raes J, García C, Verdú M. Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks. Environmental Microbiology. PMID 27871135 DOI: 10.1111/1462-2920.13609  0.587
2016 Faust K, Raes J. CoNet app: inference of biological association networks using Cytoscape. F1000research. 5: 1519. PMID 27853510 DOI: 10.12688/F1000Research.9050.2  0.584
2016 Eeckhaut V, Wang J, Van Parys A, Haesebrouck F, Joossens M, Falony G, Raes J, Ducatelle R, Van Immerseel F. The Probiotic Butyricicoccus pullicaecorum Reduces Feed Conversion and Protects from Potentially Harmful Intestinal Microorganisms and Necrotic Enteritis in Broilers. Frontiers in Microbiology. 7: 1416. PMID 27708624 DOI: 10.3389/Fmicb.2016.01416  0.612
2016 Beaumont M, Goodrich JK, Jackson MA, Yet I, Davenport ER, Vieira-Silva S, Debelius J, Pallister T, Mangino M, Raes J, Knight R, Clark AG, Ley RE, Spector TD, Bell JT. Heritable components of the human fecal microbiome are associated with visceral fat. Genome Biology. 17: 189. PMID 27666579 DOI: 10.1186/S13059-016-1052-7  0.338
2016 Vieira-Silva S, Falony G, Darzi Y, Lima-Mendez G, Garcia Yunta R, Okuda S, Vandeputte D, Valles-Colomer M, Hildebrand F, Chaffron S, Raes J. Species-function relationships shape ecological properties of the human gut microbiome. Nature Microbiology. 1: 16088. PMID 27573110 DOI: 10.1038/Nmicrobiol.2016.88  0.755
2016 Holvoet T, Joossens M, Wang J, Boelens J, Verhasselt B, Laukens D, van Vlierberghe H, Hindryckx P, De Vos M, De Looze D, Raes J. Assessment of faecal microbial transfer in irritable bowel syndrome with severe bloating. Gut. PMID 27511198 DOI: 10.1136/Gutjnl-2016-312513  0.326
2016 Pedersen HK, Gudmundsdottir V, Nielsen HB, Hyotylainen T, Nielsen T, Jensen BA, Forslund K, Hildebrand F, Prifti E, Falony G, Le Chatelier E, Levenez F, Doré J, Mattila I, Plichta DR, ... ... Raes J, et al. Human gut microbes impact host serum metabolome and insulin sensitivity. Nature. PMID 27409811 DOI: 10.1038/Nature18646  0.774
2016 Darzi Y, Jiao Y, Hasegawa M, Moon H, Núñez G, Inohara N, Raes J. The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity. Plos One. 11: e0158866. PMID 27409077 DOI: 10.1371/Journal.Pone.0158866  0.359
2016 Tito RY, Cypers H, Joossens M, Varkas G, Van Praet L, Glorieus E, Van den Bosch F, De Vos M, Raes J, Elewaut D. Dialister as microbial marker of disease activity in spondyloarthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 27390077 DOI: 10.1002/Art.39802  0.302
2016 Günther S, Faust K, Schumann J, Harms H, Raes J, Müller S. Species-sorting and mass-transfer paradigms control managed natural metacommunities. Environmental Microbiology. PMID 27338005 DOI: 10.1111/1462-2920.13402  0.586
2016 Faust K, Raes J. Host-microbe interaction: Rules of the game for microbiota. Nature. 534: 182-3. PMID 27279206 DOI: 10.1038/534182A  0.59
2016 Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ballet V, Ferrante M, Van Assche G, Van der Merwe S, Vermeire S, Raes J. Primary sclerosing cholangitis is characterised by intestinal dysbiosis independent from IBD. Gut. PMID 27207975 DOI: 10.1136/Gutjnl-2015-311004  0.632
2016 Mattiello F, Verbist B, Faust K, Raes J, Shannon WD, Bijnens L, Thas O. A web application for sample size and power calculation in case-control microbiome studies. Bioinformatics (Oxford, England). PMID 27153704 DOI: 10.1093/Bioinformatics/Btw099  0.539
2016 Mysara M, Leys N, Raes J, Monsieurs P. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data. Bmc Bioinformatics. 17: 192. PMID 27130479 DOI: 10.1186/S12859-016-1061-2  0.312
2016 Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M, Vatanen T, Mujagic Z, Vila AV, Falony G, Vieira-Silva S, Wang J, Imhann F, Brandsma E, Jankipersadsing SA, Joossens M, ... ... Raes J, et al. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science (New York, N.Y.). 352: 565-9. PMID 27126040 DOI: 10.1126/Science.Aad3369  0.758
2016 Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, Tito RY, Chaffron S, Rymenans L, Verspecht C, De Sutter L, ... ... Raes J, et al. Population-level analysis of gut microbiome variation. Science (New York, N.Y.). 352: 560-4. PMID 27126039 DOI: 10.1126/Science.Aad3503  0.744
2016 Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM. Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults. Plos One. 11: e0153294. PMID 27070903 DOI: 10.1371/Journal.Pone.0153294  0.676
2016 Cornejo-Castillo FM, Cabello AM, Salazar G, Sánchez-Baracaldo P, Lima-Mendez G, Hingamp P, Alberti A, Sunagawa S, Bork P, de Vargas C, Raes J, Bowler C, Wincker P, Zehr JP, Gasol JM, et al. Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton. Nature Communications. 7: 11071. PMID 27002549 DOI: 10.1038/Ncomms11071  0.564
2016 Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, et al. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The Isme Journal. PMID 26905627 DOI: 10.1038/Ismej.2015.235  0.597
2016 Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JC, Malviya S, Sunagawa S, Dimier C, ... ... Raes J, et al. Plankton networks driving carbon export in the oligotrophic ocean. Nature. PMID 26863193 DOI: 10.1038/Nature16942  0.737
2016 Valles-Colomer M, Darzi Y, Vieira-Silva S, Falony G, Joossens M, Raes J. Meta-omics in IBD research: applications, challenges and guidelines. Journal of Crohn's & Colitis. PMID 26802086 DOI: 10.1093/Ecco-Jcc/Jjw024  0.629
2016 Sabino J, Vieira-Silva S, Cleynen I, Machiels K, Joossens M, Falony G, Wang J, Ballet V, Ferrante M, Van Assche G, Van Der Merwe S, Raes J, Vermeire S. Tu1713 Host-Microbiome Interactions in Primary Sclerosing Cholangitis Gastroenterology. 150: S927-S928. DOI: 10.1016/S0016-5085(16)33144-4  0.607
2016 Sabino J, Vieira-Silva S, Cleynen I, Nys K, Machiels K, Joossens M, Falony G, Wang J, Ballet V, Ferrante M, Van Assche G, Van Der Merwe S, Raes J, Vermeire S. Su1909 Genetic Risk for Crohn's Disease has Little Impact on Intestinal Microbiota Composition Gastroenterology. 150: S585-S586. DOI: 10.1016/S0016-5085(16)32008-X  0.622
2015 Edwards RA, McNair K, Faust K, Raes J, Dutilh BE. Computational approaches to predict bacteriophage-host relationships. Fems Microbiology Reviews. PMID 26657537 DOI: 10.1093/Femsre/Fuv048  0.581
2015 Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Krogh Pedersen H, Arumugam M, Kristiansen K, Yvonne Voigt A, Vestergaard H, Hercog R, ... ... Raes J, et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. PMID 26633628 DOI: 10.1038/Nature15766  0.811
2015 Darzi Y, Falony G, Vieira-Silva S, Raes J. Towards biome-specific analysis of meta-omics data. The Isme Journal. PMID 26623543 DOI: 10.1038/Ismej.2015.188  0.63
2015 Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Krogh Pedersen H, Arumugam M, Kristiansen K, Yvonne Voigt A, Vestergaard H, Hercog R, ... ... Raes J, et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. PMID 26618873 DOI: 10.1038/nature15766  0.781
2015 Faust K, Lima-Mendez G, Lerat JS, Sathirapongsasuti JF, Knight R, Huttenhower C, Lenaerts T, Raes J. Cross-biome comparison of microbial association networks. Frontiers in Microbiology. 6: 1200. PMID 26579106 DOI: 10.3389/Fmicb.2015.01200  0.59
2015 Vermeire S, Joossens M, Verbeke K, Wang J, Machiels K, Sabino J, Ferrante M, Van Assche G, Rutgeerts P, Raes J. Donor species richness determines fecal microbiota transplantation success in inflammatory bowel disease. Journal of Crohn's & Colitis. PMID 26519463 DOI: 10.1093/Ecco-Jcc/Jjv203  0.301
2015 Laukens D, Brinkman BM, Raes J, De Vos M, Vandenabeele P. Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design. Fems Microbiology Reviews. PMID 26323480 DOI: 10.1093/Femsre/Fuv036  0.375
2015 Falony G, Vieira-Silva S, Raes J. Microbiology Meets Big Data: The Case of Gut Microbiota-Derived Trimethylamine. Annual Review of Microbiology. 69: 305-21. PMID 26274026 DOI: 10.1146/Annurev-Micro-091014-104422  0.672
2015 Verbeke KA, Boobis AR, Chiodini A, Edwards CA, Franck A, Kleerebezem M, Nauta A, Raes J, van Tol EA, Tuohy KM. Towards microbial fermentation metabolites as markers for health benefits of prebiotics. Nutrition Research Reviews. 28: 42-66. PMID 26156216 DOI: 10.1017/S0954422415000037  0.345
2015 Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut. PMID 26069274 DOI: 10.1136/Gutjnl-2015-309618  0.663
2015 Faust K, Lahti L, Gonze D, de Vos WM, Raes J. Metagenomics meets time series analysis: unraveling microbial community dynamics. Current Opinion in Microbiology. 25: 56-66. PMID 26005845 DOI: 10.1016/J.Mib.2015.04.004  0.601
2015 Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, ... ... Raes J, et al. Ocean plankton. Determinants of community structure in the global plankton interactome. Science (New York, N.Y.). 348: 1262073. PMID 25999517 DOI: 10.1126/Science.1262073  0.696
2015 de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, ... ... Raes J, et al. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science (New York, N.Y.). 348: 1261605. PMID 25999516 DOI: 10.1126/Science.1261605  0.596
2015 Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, ... ... Raes J, et al. Ocean plankton. Structure and function of the global ocean microbiome. Science (New York, N.Y.). 348: 1261359. PMID 25999513 DOI: 10.1126/Science.1261359  0.81
2015 Geirnaert A, Wang J, Tinck M, Steyaert A, Van den Abbeele P, Eeckhaut V, Vilchez-Vargas R, Falony G, Laukens D, De Vos M, Van Immerseel F, Raes J, Boon N, Van de Wiele T. Interindividual differences in response to treatment with butyrate-producing Butyricicoccus pullicaecorum 25-3T studied in an in vitro gut model. Fems Microbiology Ecology. 91. PMID 25999470 DOI: 10.1093/Femsec/Fiv054  0.653
2015 Navarrete AA, Tsai SM, Mendes LW, Faust K, de Hollander M, Cassman NA, Raes J, van Veen JA, Kuramae EE. Soil microbiome responses to the short-term effects of Amazonian deforestation. Molecular Ecology. 24: 2433-48. PMID 25809788 DOI: 10.1111/Mec.13172  0.547
2015 Rajili?-Stojanovi? M, Jonkers DM, Salonen A, Hanevik K, Raes J, Jalanka J, de Vos WM, Manichanh C, Golic N, Enck P, Philippou E, Iraqi FA, Clarke G, Spiller RC, Penders J. Intestinal microbiota and diet in IBS: causes, consequences, or epiphenomena? The American Journal of Gastroenterology. 110: 278-87. PMID 25623659 DOI: 10.1038/Ajg.2014.427  0.34
2015 Nguyen TL, Vieira-Silva S, Liston A, Raes J. How informative is the mouse for human gut microbiota research? Disease Models & Mechanisms. 8: 1-16. PMID 25561744 DOI: 10.1242/Dmm.017400  0.38
2015 Mysara M, Saeys Y, Leys N, Raes J, Monsieurs P. CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies. Applied and Environmental Microbiology. 81: 1573-84. PMID 25527546 DOI: 10.1128/Aem.02896-14  0.322
2015 Vandeputte D, Vanleeuwen R, Falony G, Joossens M, Raes J. Perspectives and pitfalls of microbiome research through home based fecal sampling: the Flemish Gut Flora Project experience Archives of Public Health. 73. DOI: 10.1186/2049-3258-73-S1-P33  0.614
2015 Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ballet V, Ferrante M, Van Assche GA, Van der Merwe S, Raes J, Vermeire S. 262 Intestinal Dysbiosis in Patients With Primary Sclerosing Cholangitis Gastroenterology. 148: S-60. DOI: 10.1016/S0016-5085(15)30207-9  0.592
2015 Marzorati M, Qin B, Hildebrand F, Klosterbuer A, Roughead Z, Roessle C, Rochat F, Raes J, Possemiers S. Addition of acacia gum to a FOS/inulin blend improves its fermentation profile in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®) Journal of Functional Foods. 16: 211-222. DOI: 10.1016/J.Jff.2015.04.039  0.578
2014 Hildebrand F, Tadeo R, Voigt AY, Bork P, Raes J. LotuS: an efficient and user-friendly OTU processing pipeline. Microbiome. 2: 30. PMID 27367037 DOI: 10.1186/2049-2618-2-30  0.698
2014 Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, ... ... Raes J, et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nature Biotechnology. 32: 822-8. PMID 24997787 DOI: 10.1038/Nbt.2939  0.803
2014 Kubica M, Hildebrand F, Brinkman BM, Goossens D, Del Favero J, Vercammen K, Cornelis P, Schröder JM, Vandenabeele P, Raes J, Declercq W. The skin microbiome of caspase-14-deficient mice shows mild dysbiosis. Experimental Dermatology. 23: 561-7. PMID 24863253 DOI: 10.1111/Exd.12458  0.53
2014 Ye L, Matthijs S, Bodilis J, Hildebrand F, Raes J, Cornelis P. Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. 27: 633-44. PMID 24756978 DOI: 10.1007/S10534-014-9734-7  0.52
2014 Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, et al. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environmental Microbiology. 16: 2659-71. PMID 24102695 DOI: 10.1111/1462-2920.12250  0.6
2014 Faust K, Raes J. Comparative analysis of biome-specific microbial association networks F1000research. 5. DOI: 10.7490/F1000Research.1094770.1  0.545
2014 Raes J. The gut microbiome - a new target for understanding, diagnosing and treating disease Archives of Public Health. 72. DOI: 10.1186/2049-3258-72-S1-K3  0.431
2014 Hildebrand F, Tito RY, Voigt AY, Bork P, Raes J. Correction to: LotuS: An efficient and user-friendly OTU processing pipeline [Microbiome, 2, (2014), 30] Microbiome. 2. DOI: 10.1186/2049-2618-2-37  0.631
2014 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto J, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Addendum: Enterotypes of the human gut microbiome Nature. 506: 516-516. DOI: 10.1038/Nature13075  0.785
2014 Hildebrand F, Tadeo R, Voigt AY, Bork P, Raes J. LotuS: An efficient and user-friendly OTU processing pipeline Microbiome. 2.  0.593
2013 Brinkman BM, Becker A, Ayiseh RB, Hildebrand F, Raes J, Huys G, Vandenabeele P. Gut microbiota affects sensitivity to acute DSS-induced colitis independently of host genotype. Inflammatory Bowel Diseases. 19: 2560-7. PMID 24105395 DOI: 10.1097/Mib.0B013E3182A8759A  0.526
2013 Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, ... ... Raes J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 500: 541-6. PMID 23985870 DOI: 10.1038/Nature12506  0.794
2013 Ye L, Ballet S, Hildebrand F, Laus G, Guillemyn K, Raes J, Matthijs S, Martins J, Cornelis P. A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. 26: 561-75. PMID 23877277 DOI: 10.1007/S10534-013-9653-Z  0.51
2013 Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, ... ... Raes J, et al. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The Isme Journal. 7: 1678-95. PMID 23575371 DOI: 10.1038/Ismej.2013.59  0.719
2013 Hildebrand F, Nguyen TL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, Liston A, Raes J. Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biology. 14: R4. PMID 23347395 DOI: 10.1186/Gb-2013-14-1-R4  0.574
2013 Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G. The chemical interactome space between the human host and the genetically defined gut metabotypes. The Isme Journal. 7: 730-42. PMID 23178670 DOI: 10.1038/Ismej.2012.141  0.623
2013 Lepage P, Leclerc MC, Joossens M, Mondot S, Blottière HM, Raes J, Ehrlich D, Doré J. A metagenomic insight into our gut's microbiome. Gut. 62: 146-58. PMID 22525886 DOI: 10.1136/Gutjnl-2011-301805  0.417
2012 Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK. Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. Plos One. 7: e49138. PMID 23209564 DOI: 10.1371/Journal.Pone.0049138  0.366
2012 Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, ... ... Raes J, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 490: 55-60. PMID 23023125 DOI: 10.1038/Nature11450  0.654
2012 Hildebrand F, Ebersbach T, Nielsen HB, Li X, Sonne SB, Bertalan M, Dimitrov P, Madsen L, Qin J, Wang J, Raes J, Kristiansen K, Licht TR. A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens). Bmc Genomics. 13: 514. PMID 23020652 DOI: 10.1186/1471-2164-13-514  0.601
2012 Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C. Microbial co-occurrence relationships in the human microbiome. Plos Computational Biology. 8: e1002606. PMID 22807668 DOI: 10.1371/Journal.Pcbi.1002606  0.748
2012 Faust K, Raes J. Microbial interactions: from networks to models. Nature Reviews. Microbiology. 10: 538-50. PMID 22796884 DOI: 10.1038/Nrmicro2832  0.572
2012 Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/Gr.138198.112  0.648
2012 Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P. Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours. Molecular Systems Biology. 8: 581. PMID 22569339 DOI: 10.1038/Msb.2012.13  0.74
2012 Mende DR, Waller AS, Sunagawa S, Järvelin AI, Chan MM, Arumugam M, Raes J, Bork P. Assessment of metagenomic assembly using simulated next generation sequencing data. Plos One. 7: e31386. PMID 22384016 DOI: 10.1371/Journal.Pone.0031386  0.793
2012 Zoetendal EG, Raes J, van den Bogert B, Arumugam M, Booijink CC, Troost FJ, Bork P, Wels M, de Vos WM, Kleerebezem M. The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. The Isme Journal. 6: 1415-26. PMID 22258098 DOI: 10.1038/Ismej.2011.212  0.724
2012 Vermeire S, Joossens M, Verbeke K, Hildebrand F, Machiels K, Van den Broeck K, Van Assche G, Rutgeerts PJ, Raes J. Sa1922 Pilot Study on the Safety and Efficacy of Faecal Microbiota Transplantation in Refractory Crohn's Disease Gastroenterology. 142: S-360. DOI: 10.1016/S0016-5085(12)61356-0  0.5
2011 Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, et al. A holistic approach to marine eco-systems biology. Plos Biology. 9: e1001177. PMID 22028628 DOI: 10.1371/Journal.Pbio.1001177  0.557
2011 Brinkman BM, Hildebrand F, Kubica M, Goosens D, Del Favero J, Declercq W, Raes J, Vandenabeele P. Caspase deficiency alters the murine gut microbiome. Cell Death & Disease. 2: e220. PMID 22012254 DOI: 10.1038/Cddis.2011.101  0.544
2011 Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P. Universally distributed single-copy genes indicate a constant rate of horizontal transfer. Plos One. 6: e22099. PMID 21850220 DOI: 10.1371/Journal.Pone.0022099  0.781
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Raes J, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  0.759
2011 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/Nature09944  0.81
2011 Raes J, Letunic I, Yamada T, Jensen LJ, Bork P. Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data. Molecular Systems Biology. 7: 473. PMID 21407210 DOI: 10.1038/Msb.2011.6  0.8
2011 Arumugam M, Raes J, Pelletier E, Paslier DL, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Erratum: Enterotypes of the human gut microbiome (Nature (2011) 473 (174-180)) Nature. 474: 666-666. DOI: 10.1038/Nature10187  0.774
2010 Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, ... ... Raes J, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550  0.322
2010 Harrington ED, Arumugam M, Raes J, Bork P, Relman DA. SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics (Oxford, England). 26: 2979-80. PMID 20966005 DOI: 10.1093/Bioinformatics/Btq564  0.745
2010 Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics (Oxford, England). 26: 2977-8. PMID 20959381 DOI: 10.1093/Bioinformatics/Btq536  0.755
2010 Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 464: 59-65. PMID 20203603 DOI: 10.1038/Nature08821  0.813
2010 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Raes J, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1  0.576
2009 Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, Letunic I, Yamada T, Paccanaro A, Jensen LJ, Snyder M, Bork P, Gerstein MB. Quantifying environmental adaptation of metabolic pathways in metagenomics. Proceedings of the National Academy of Sciences of the United States of America. 106: 1374-9. PMID 19164758 DOI: 10.1073/Pnas.0808022106  0.797
2009 Singh AH, Doerks T, Letunic I, Raes J, Bork P. Discovering functional novelty in metagenomes: examples from light-mediated processes. Journal of Bacteriology. 191: 32-41. PMID 18849420 DOI: 10.1128/Jb.01084-08  0.783
2008 Foerstner KU, Doerks T, Muller J, Raes J, Bork P. A nitrile hydratase in the eukaryote Monosiga brevicollis. Plos One. 3: e3976. PMID 19096720 DOI: 10.1371/Journal.Pone.0003976  0.787
2008 Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P. A molecular study of microbe transfer between distant environments. Plos One. 3: e2607. PMID 18612393 DOI: 10.1371/Journal.Pone.0002607  0.793
2008 Raes J, Bork P. Molecular eco-systems biology: towards an understanding of community function. Nature Reviews. Microbiology. 6: 693-9. PMID 18587409 DOI: 10.1038/Nrmicro1935  0.601
2008 Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, von Mering C, Bebout BM, Pace NR, Bork P, Hugenholtz P. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Molecular Systems Biology. 4: 198. PMID 18523433 DOI: 10.1038/Msb.2008.35  0.699
2007 Raes J, Foerstner KU, Bork P. Get the most out of your metagenome: computational analysis of environmental sequence data. Current Opinion in Microbiology. 10: 490-8. PMID 17936679 DOI: 10.1016/J.Mib.2007.09.001  0.613
2007 Harrington ED, Singh AH, Doerks T, Letunic I, von Mering C, Jensen LJ, Raes J, Bork P. Quantitative assessment of protein function prediction from metagenomics shotgun sequences. Proceedings of the National Academy of Sciences of the United States of America. 104: 13913-8. PMID 17717083 DOI: 10.1073/Pnas.0702636104  0.788
2007 Raes J, Harrington ED, Singh AH, Bork P. Protein function space: viewing the limits or limited by our view? Current Opinion in Structural Biology. 17: 362-9. PMID 17574832 DOI: 10.1016/J.Sbi.2007.05.010  0.73
2007 von Mering C, Hugenholtz P, Raes J, Tringe SG, Doerks T, Jensen LJ, Ward N, Bork P. Quantitative phylogenetic assessment of microbial communities in diverse environments. Science (New York, N.Y.). 315: 1126-30. PMID 17272687 DOI: 10.1126/Science.1133420  0.803
2007 Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P. Prediction of effective genome size in metagenomic samples. Genome Biology. 8: R10. PMID 17224063 DOI: 10.1186/Gb-2007-8-1-R10  0.768
2006 Rehwinkel J, Raes J, Izaurralde E. Nonsense-mediated mRNA decay: Target genes and functional diversification of effectors. Trends in Biochemical Sciences. 31: 639-46. PMID 17010613 DOI: 10.1016/J.Tibs.2006.09.005  0.324
2006 Baele G, Raes J, Van de Peer Y, Vansteelandt S. An improved statistical method for detecting heterotachy in nucleotide sequences. Molecular Biology and Evolution. 23: 1397-405. PMID 16672284 DOI: 10.1093/Molbev/Msl006  0.58
2006 Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biology. 7: R13. PMID 16507168 DOI: 10.1186/Gb-2006-7-2-R13  0.605
2005 Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. Rna (New York, N.Y.). 11: 1530-44. PMID 16199763 DOI: 10.1261/Rna.2160905  0.717
2005 Beysen D, Raes J, Leroy BP, Lucassen A, Yates JR, Clayton-Smith J, Ilyina H, Brooks SS, Christin-Maitre S, Fellous M, Fryns JP, Kim JR, Lapunzina P, Lemyre E, Meire F, et al. Deletions involving long-range conserved nongenic sequences upstream and downstream of FOXL2 as a novel disease-causing mechanism in blepharophimosis syndrome. American Journal of Human Genetics. 77: 205-18. PMID 15962237 DOI: 10.1086/432083  0.613
2005 Raes J, Van de Peer Y. Functional divergence of proteins through frameshift mutations. Trends in Genetics : Tig. 21: 428-31. PMID 15951050 DOI: 10.1016/J.Tig.2005.05.013  0.582
2005 Maere S, De Bodt S, Raes J, Casneuf T, Van Montagu M, Kuiper M, Van de Peer Y. Modeling gene and genome duplications in eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 102: 5454-9. PMID 15800040 DOI: 10.1073/Pnas.0501102102  0.621
2005 Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, ... ... Raes J, et al. GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Research. 33: D641-6. PMID 15608279 DOI: 10.1093/Nar/Gki115  0.31
2004 Taylor JS, Raes J. Duplication and divergence: the evolution of new genes and old ideas. Annual Review of Genetics. 38: 615-43. PMID 15568988 DOI: 10.1146/Annurev.Genet.38.072902.092831  0.319
2003 Raes J, Van de Peer Y. Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico. Applied Bioinformatics. 2: 91-101. PMID 15130825  0.569
2003 Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W. Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiology. 133: 1051-71. PMID 14612585 DOI: 10.1104/Pp.103.026484  0.626
2003 De Bodt S, Raes J, Van de Peer Y, Theissen G. And then there were many: MADS goes genomic. Trends in Plant Science. 8: 475-83. PMID 14557044 DOI: 10.1016/J.Tplants.2003.09.006  0.615
2003 Raes J, Vandepoele K, Simillion C, Saeys Y, Van de Peer Y. Investigating ancient duplication events in the Arabidopsis genome. Journal of Structural and Functional Genomics. 3: 117-29. PMID 12836691 DOI: 10.1007/978-94-010-0263-9_12  0.712
2003 De Bodt S, Raes J, Florquin K, Rombauts S, Rouzé P, Theissen G, Van de Peer Y. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. Journal of Molecular Evolution. 56: 573-86. PMID 12698294 DOI: 10.1007/S00239-002-2426-X  0.595
2002 Vandepoele K, Saeys Y, Simillion C, Raes J, Van De Peer Y. The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice. Genome Research. 12: 1792-801. PMID 12421767 DOI: 10.1101/Gr.400202  0.717
2002 Breyne P, Dreesen R, Vandepoele K, De Veylder L, Van Breusegem F, Callewaert L, Rombauts S, Raes J, Cannoot B, Engler G, Inzé D, Zabeau M. Transcriptome analysis during cell division in plants. Proceedings of the National Academy of Sciences of the United States of America. 99: 14825-30. PMID 12393816 DOI: 10.1073/Pnas.222561199  0.554
2002 Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D. Genome-wide analysis of core cell cycle genes in Arabidopsis. The Plant Cell. 14: 903-16. PMID 11971144 DOI: 10.1105/Tpc.010445  0.58
Low-probability matches (unlikely to be authored by this person)
2019 Ejtahed HS, Tabatabaei-Malazy O, Soroush AR, Hasani-Ranjbar S, Siadat SD, Raes J, Larijani B. Worldwide trends in scientific publications on association of gut microbiota with obesity. Iranian Journal of Basic Medical Sciences. 22: 65-71. PMID 30944710 DOI: 10.22038/Ijbms.2018.30203.7281  0.299
2017 Malan-Muller S, Valles-Colomer M, Raes J, Lowry CA, Seedat S, Hemmings SMJ. The Gut Microbiome and Mental Health: Implications for Anxiety- and Trauma-Related Disorders. Omics : a Journal of Integrative Biology. PMID 28767318 DOI: 10.1089/Omi.2017.0077  0.298
2020 Caenepeel C, Vieira-Silva S, Verstockt B, Machiels K, Davani NA, Sabino J, Ferrante M, Raes J, Vermeire S. Su1199 THE IMPACT OF BIOLOGICAL TREATMENT AND INFLAMMATORY BURDEN IN INFLAMMATORY BOWEL DISEASE ON THE GUT MICROBIOTA Gastroenterology. 158. DOI: 10.1016/S0016-5085(20)32047-3  0.295
2020 Caenepeel C, Viera-Silva S, Verstockt B, Machiels K, Davani NA, Sabino J, Ferrante M, Raes J, Vermeire S. OP20 The gut microbiota during biological therapy for inflammatory bowel disease Journal of Crohns & Colitis. 14. DOI: 10.1093/Ecco-Jcc/Jjz203.019  0.293
2019 Caenepeel C, Vieira-Silva S, Vázquez-Castellanos JF, Verstockt B, Ferrante M, Raes J, Vermeire S. Tu1789 – Treatment Response to Ustekinumab and Vedolizumab in Inflammatory Bowel Disease: the Predictive Role of Gut Microbiota Gastroenterology. 156: S-1124. DOI: 10.1016/S0016-5085(19)39775-6  0.291
2017 Conceição-Neto N, Deboutte W, Dierckx T, Machiels K, Wang J, Yinda KC, Maes P, Van Ranst M, Joossens M, Raes J, Vermeire S, Matthijnssens J. Low eukaryotic viral richness is associated with faecal microbiota transplantation success in patients with UC. Gut. PMID 29066574 DOI: 10.1136/Gutjnl-2017-315281  0.289
2019 Caenepeel C, Vieira-Silva S, Verstockt B, Ferrante M, Raes J, Vermeire S. P836 The predictive role of gut microbiota in treatment response to vedolizumab and ustekinumab in inflammatory bowel disease Journal of Crohn's and Colitis. 13: S542-S542. DOI: 10.1093/Ecco-Jcc/Jjy222.960  0.286
2016 Raes J. Microbiome-based companion diagnostics: no longer science fiction? Gut. 65: 896-7. PMID 26801884 DOI: 10.1136/Gutjnl-2015-311015  0.284
2014 Almouzni G, Altucci L, Amati B, Ashley N, Baulcombe D, Beaujean N, Bock C, Bongcam-Rudloff E, Bousquet J, Braun S, Bressac-de Paillerets B, Bussemakers M, Clarke L, Conesa A, Estivill X, ... ... Raes J, et al. Relationship between genome and epigenome--challenges and requirements for future research. Bmc Genomics. 15: 487. PMID 24942464 DOI: 10.1186/1471-2164-15-487  0.284
2015 Van Praet JT, Donovan E, Vanassche I, Drennan MB, Windels F, Dendooven A, Allais L, Cuvelier CA, van de Loo F, Norris PS, Kruglov AA, Nedospasov SA, Rabot S, Tito R, Raes J, et al. Commensal microbiota influence systemic autoimmune responses. The Embo Journal. 34: 466-74. PMID 25599993 DOI: 10.15252/Embj.201489966  0.284
2013 Brown J, de Vos WM, DiStefano PS, Doré J, Huttenhower C, Knight R, Lawley TD, Raes J, Turnbaugh P. Translating the human microbiome. Nature Biotechnology. 31: 304-8. PMID 23563424 DOI: 10.1038/Nbt.2543  0.281
2013 Jiao Y, Darzi Y, Tawaratsumida K, Marchesan JT, Hasegawa M, Moon H, Chen GY, Núñez G, Giannobile WV, Raes J, Inohara N. Induction of bone loss by pathobiont-mediated Nod1 signaling in the oral cavity. Cell Host & Microbe. 13: 595-601. PMID 23684310 DOI: 10.1016/J.Chom.2013.04.005  0.279
2018 Ejtahed HS, Tito RY, Siadat SD, Hasani-Ranjbar S, Hoseini-Tavassol Z, Rymenans L, Verbeke K, Soroush AR, Raes J, Larijani B. Metformin induces weight loss associated with gut microbiota alteration in non-diabetic obese women: a randomized double-blind clinical trial. European Journal of Endocrinology. PMID 30540558 DOI: 10.1530/Eje-18-0826  0.275
2012 Parizot B, Roberts I, Raes J, Beeckman T, De Smet I. In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 1479-88. PMID 22527390 DOI: 10.1098/Rstb.2011.0227  0.273
2014 Vereecke L, Vieira-Silva S, Billiet T, van Es JH, Mc Guire C, Slowicka K, Sze M, van den Born M, De Hertogh G, Clevers H, Raes J, Rutgeerts P, Vermeire S, Beyaert R, van Loo G. A20 controls intestinal homeostasis through cell-specific activities. Nature Communications. 5: 5103. PMID 25267258 DOI: 10.1038/Ncomms6103  0.268
2017 Conceição-Neto N, Deboutte W, Dierckx T, Machiels K, Wang J, Yinda C, Maes P, Van Ranst M, Joossens M, Raes J, Vermeire S, Matthijnssens J. DOP080 Low viral richness at baseline in ulcerative ulcerative colitis associated with faecal microbiota transplantation success Journal of Crohn's and Colitis. 11: S73-S74. DOI: 10.1093/Ecco-Jcc/Jjx002.117  0.268
2020 Holvoet T, Joossens M, Vázquez-Castellanos JF, Christiaens E, Heyerick L, Boelens J, Verhasselt B, van Vlierberghe H, De Vos M, Raes J, De Looze D. Fecal Microbiota Transplantation Reduces Symptoms in Some Patients With Irritable Bowel Syndrome with Predominant Abdominal Bloating: Short- and Long-Term Results from a Placebo-Controlled Randomized Trial. Gastroenterology. PMID 32681922 DOI: 10.1053/J.Gastro.2020.07.013  0.265
2022 Krukowski H, Valkenburg S, Madella AM, Garssen J, van Bergenhenegouwen J, Overbeek SA, Huys GRB, Raes J, Glorieux G. Gut microbiome studies in CKD: opportunities, pitfalls and therapeutic potential. Nature Reviews. Nephrology. PMID 36357577 DOI: 10.1038/s41581-022-00647-z  0.261
2017 de Bruyn M, Sabino J, Vandeputte D, Vermeire S, Raes J, Opdenakker G. Matrix Metalloproteinase/MMP-9 Gene Knockout does not Influence Changes in Gut Microbiota in a Model of Acute Dextran Sodium Sulphate/DSS-Induced Colitis Gastroenterology. 152: S623. DOI: 10.1016/S0016-5085(17)32214-X  0.261
2004 Torres Acosta JA, de Almeida Engler J, Raes J, Magyar Z, De Groodt R, Inzé D, De Veylder L. Molecular characterization of Arabidopsis PHO80-like proteins, a novel class of CDKA;1-interacting cyclins. Cellular and Molecular Life Sciences : Cmls. 61: 1485-97. PMID 15197472 DOI: 10.1007/S00018-004-4057-4  0.261
2018 He Y, Wu W, Zheng HM, Li P, McDonald D, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, ... ... Raes J, et al. Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models. Nature Medicine. PMID 30250144 DOI: 10.1038/S41591-018-0219-Z  0.259
2018 Christensen R, Heitmann BL, Andersen KW, Nielsen OH, Sørensen SB, Jawhara M, Bygum A, Hvid L, Grauslund J, Wied J, Glerup H, Fredberg U, Villadsen JA, Kjær SG, Fallingborg J, ... ... Raes J, et al. Impact of red and processed meat and fibre intake on treatment outcomes among patients with chronic inflammatory diseases: protocol for a prospective cohort study of prognostic factors and personalised medicine. Bmj Open. 8: e018166. PMID 29439003 DOI: 10.1136/Bmjopen-2017-018166  0.258
2020 Reynders T, Devolder L, Valles-Colomer M, Van Remoortel A, Joossens M, De Keyser J, Nagels G, D'hooghe M, Raes J. Gut microbiome variation is associated to Multiple Sclerosis phenotypic subtypes. Annals of Clinical and Translational Neurology. PMID 32162850 DOI: 10.1002/Acn3.51004  0.253
2015 Holvoet T, Boelens J, Joossens M, Raes J, De Vos M, De Looze D. Tu2025 Fecal Microbiota Transplantation in Irritable Bowel Syndrome With Bloating: Results From a Prospective Pilot Study Gastroenterology. 148: S-963-S-964. DOI: 10.1016/S0016-5085(15)33291-1  0.251
2006 Cnops G, Neyt P, Raes J, Petrarulo M, Nelissen H, Malenica N, Luschnig C, Tietz O, Ditengou F, Palme K, Azmi A, Prinsen E, Van Lijsebettens M. The TORNADO1 and TORNADO2 genes function in several patterning processes during early leaf development in Arabidopsis thaliana. The Plant Cell. 18: 852-66. PMID 16531491 DOI: 10.1105/Tpc.105.040568  0.25
2015 Mysara M, Leys N, Raes J, Monsieurs P. NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads. Bmc Bioinformatics. 16: 88. PMID 25888405 DOI: 10.1186/S12859-015-0520-5  0.25
2020 Beirinckx S, Viaene T, Haegeman A, Debode J, Amery F, Vandenabeele S, Nelissen H, Inzé D, Tito R, Raes J, De Tender C, Goormachtig S. Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions. Microbiome. 8: 54. PMID 32305066 DOI: 10.1186/S40168-020-00833-W  0.249
2022 Lloréns-Rico V, Simcock JA, Huys GRB, Raes J. Single-cell approaches in human microbiome research. Cell. 185: 2725-2738. PMID 35868276 DOI: 10.1016/j.cell.2022.06.040  0.24
2018 Holvoet T, Joossens M, Jerina B, Christiaens E, Heyerick L, Verhasselt B, De Vos M, Hindryckx P, Raes J, De Looze D. 617 - Fecal Microbiota Transplantation in Irritable Bowel Syndrome with Predominant Abdominal Bloating: Results from a Double Blind, Placebo-Controlled Clinical Trial Gastroenterology. 154: S-130. DOI: 10.1016/S0016-5085(18)30860-6  0.238
2018 Raes J. Editorial overview: It's the ecology, stupid: microbiome research in the post-stamp collecting age. Current Opinion in Microbiology. PMID 30145038 DOI: 10.1016/J.Mib.2018.07.008  0.235
2023 Minnebo Y, De Paepe K, Raes J, Van de Wiele T. Eating patterns contribute to shaping the gut microbiota in the mucosal simulator of the human intestinal microbial ecosystem. Fems Microbiology Ecology. 99. PMID 37974054 DOI: 10.1093/femsec/fiad149  0.234
2017 de Bruyn M, Sabino J, Vandeputte D, Vermeire S, Raes J, Opdenakker G. P078 Gut microbiome profiling of MMP-9 deficient mice and their wild-type littermates in a model of acute DSS-induced colitis Journal of Crohn's and Colitis. 11: S116-S117. DOI: 10.1093/Ecco-Jcc/Jjx002.204  0.234
2022 Si J, Choi Y, Raes J, Ko G, You HJ. Sputum Bacterial Metacommunities in Distinguishing Heterogeneity in Respiratory Health and Disease. Frontiers in Microbiology. 13: 719541. PMID 35432240 DOI: 10.3389/fmicb.2022.719541  0.233
2020 Carmen S, Valles-Colomer M, Arolt V, Müller N, Raes J, Wijkhuijs A, Claes S, Drexhage H, Elske V. Depression and suicidality: A link to premature T helper cell aging and increased Th17 cells. Brain, Behavior, and Immunity. PMID 32061905 DOI: 10.1016/J.Bbi.2020.02.005  0.228
2023 Hatcher C, Richenberg G, Waterson S, Nguyen LH, Joshi AD, Carreras-Torres R, Moreno V, Chan AT, Gunter M, Lin Y, Qu C, Song M, Casey G, Figueiredo JC, Gruber SB, ... ... Raes J, et al. Application of Mendelian randomization to explore the causal role of the human gut microbiome in colorectal cancer. Scientific Reports. 13: 5968. PMID 37045850 DOI: 10.1038/s41598-023-31840-0  0.228
2021 Deleu S, Machiels K, Raes J, Verbeke K, Vermeire S. Short chain fatty acids and its producing organisms: An overlooked therapy for IBD? Ebiomedicine. 66: 103293. PMID 33813134 DOI: 10.1016/j.ebiom.2021.103293  0.221
2020 Pasciuto E, Burton OT, Roca CP, Lagou V, Rajan WD, Theys T, Mancuso R, Tito RY, Kouser L, Callaerts-Vegh Z, de la Fuente AG, Prezzemolo T, Mascali LG, Brajic A, Whyte CE, ... ... Raes J, et al. Microglia Require CD4 T Cells to Complete the Fetal-to-Adult Transition. Cell. PMID 32702313 DOI: 10.1016/J.Cell.2020.06.026  0.218
2019 Knight R, Ley RE, Raes J, Grice EA. Expanding the scope and scale of microbiome research. Genome Biology. 20: 191. PMID 31488207 DOI: 10.1186/S13059-019-1804-2  0.218
2021 Lloréns-Rico V, Gregory AC, Van Weyenbergh J, Jansen S, Van Buyten T, Qian J, Braz M, Menezes SM, Van Mol P, Vanderbeke L, Dooms C, Gunst J, Hermans G, Meersseman P, ... ... Raes J, et al. Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host. Nature Communications. 12: 6243. PMID 34716338 DOI: 10.1038/s41467-021-26500-8  0.218
2018 de Bruyn M, Sabino J, Vandeputte D, Vermeire S, Raes J, Opdenakker G. Comparisons of gut microbiota profiles in wild-type and gelatinase B/matrix metalloproteinase-9-deficient mice in acute DSS-induced colitis. Npj Biofilms and Microbiomes. 4: 18. PMID 30181895 DOI: 10.1038/s41522-018-0059-0  0.216
2021 Minnebo Y, De Paepe K, Raes J, Van de Wiele T. Nutrient load acts as a driver of gut microbiota load, community composition and metabolic functionality in the simulator of the human intestinal microbial ecosystem. Fems Microbiology Ecology. PMID 34320208 DOI: 10.1093/femsec/fiab111  0.214
2020 Hernandez-Sanabria E, Vázquez-Castellanos JF, Raes J. In vitro ecology: a discovery engine for microbiome therapies. Nature Reviews. Gastroenterology & Hepatology. PMID 32934362 DOI: 10.1038/S41575-020-00364-7  0.209
2022 Arnauts K, Sudhakar P, Verstockt S, Lapierre C, Potche S, Caenepeel C, Verstockt B, Raes J, Vermeire S, Sabino J, Verfaillie C, Ferrante M. Microbiota, not host origin drives intestinal epithelial responses. Gut Microbes. 14: 2089003. PMID 35758256 DOI: 10.1080/19490976.2022.2089003  0.209
2017 Mamantopoulos M, Ronchi F, Van Hauwermeiren F, Vieira-Silva S, Yilmaz B, Martens L, Saeys Y, Drexler S, Yazdi A, Raes J, Lamkanfi M, McCoy K, Wullaert A. P776 Dysbiosis in Nlrp6/Asc-deficient mice does not result from inflammasome deficiency Journal of Crohn's and Colitis. 11: S477-S478. DOI: 10.1093/Ecco-Jcc/Jjx002.897  0.193
2020 Miclotte L, De Paepe K, Rymenans L, Callewaert C, Raes J, Rajkovic A, Van Camp J, Van de Wiele T. Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota , Irrespective of Chemical or Natural Emulsifier Origin. Frontiers in Microbiology. 11: 577474. PMID 33250870 DOI: 10.3389/fmicb.2020.577474  0.189
2023 Thielemans K, De Bondt Y, Comer L, Raes J, Everaert N, Sels BF, Courtin CM. Decreasing the Crystallinity and Degree of Polymerization of Cellulose Increases Its Susceptibility to Enzymatic Hydrolysis and Fermentation by Colon Microbiota. Foods (Basel, Switzerland). 12. PMID 36900616 DOI: 10.3390/foods12051100  0.186
2022 Vetrano S, Bouma G, Benschop RJ, Birngruber T, Costanzo A, D'Haens GRAM, Frasca L, Hillenbrand R, Iversen L, Johansen C, Kaser A, Koenen HJPM, Noehammer C, Peyrin-Biroulet L, Raes J, et al. ImmUniverse Consortium: Multi-omics integrative approach in personalized medicine for immune-mediated inflammatory diseases. Frontiers in Immunology. 13: 1002629. PMID 36439150 DOI: 10.3389/fimmu.2022.1002629  0.169
2023 Van Pee T, Hogervorst J, Dockx Y, Witters K, Thijs S, Wang C, Bongaerts E, Van Hamme JD, Vangronsveld J, Ameloot M, Raes J, Nawrot TS. Accumulation of Black Carbon Particles in Placenta, Cord Blood, and Childhood Urine in Association with the Intestinal Microbiome Diversity and Composition in Four- to Six-Year-Old Children in the ENVIRAGE Birth Cohort. Environmental Health Perspectives. 131: 17010. PMID 36719212 DOI: 10.1289/EHP11257  0.169
2021 Si J, Froussart E, Viaene T, Vázquez-Castellanos JF, Hamonts K, Tang L, Beirinckx S, De Keyser A, Deckers T, Amery F, Vandenabeele S, Raes J, Goormachtig S. Interactions between soil compositions and the wheat root microbiome under drought stress: From an to perspective. Computational and Structural Biotechnology Journal. 19: 4235-4247. PMID 34429844 DOI: 10.1016/j.csbj.2021.07.027  0.167
2021 Bonfiglio F, Liu X, Smillie C, Pandit A, Kurilshikov A, Bacigalupe R, Zheng T, Nim H, Garcia-Etxebarria K, Bujanda L, Andreasson A, Agreus L, Walter S, Abecasis G, Eijsbouts C, ... ... Raes J, et al. GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome. Cell Genomics. 1: None. PMID 34957435 DOI: 10.1016/j.xgen.2021.100069  0.165
2021 Belkhou C, Tadeo RT, Bacigalupe R, Valles-Colomer M, Chaffron S, Joossens M, Obregon A, Marín Reyes L, Trujillo O, Huys GRB, Raes J. sp. nov., a commensal spirochaete isolated from human faeces. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34672919 DOI: 10.1099/ijsem.0.005050  0.163
2021 Malan-Muller S, Valles-Colomer M, Foxx CL, Vieira-Silva S, van den Heuvel LL, Raes J, Seedat S, Lowry CA, Hemmings SMJ. Exploring the relationship between the gut microbiome and mental health outcomes in a posttraumatic stress disorder cohort relative to trauma-exposed controls. European Neuropsychopharmacology : the Journal of the European College of Neuropsychopharmacology. 56: 24-38. PMID 34923209 DOI: 10.1016/j.euroneuro.2021.11.009  0.156
2023 Minnebo Y, Delbaere K, Goethals V, Raes J, Van de Wiele T, De Paepe K. Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time. Microbiome. 11: 240. PMID 37926855 DOI: 10.1186/s40168-023-01691-y  0.154
2022 Shi C, Beller L, Wang L, Rosales Rosas A, De Coninck L, Héry L, Mousson L, Pagès N, Raes J, Delang L, Vega-Rúa A, Failloux AB, Matthijnssens J. Bidirectional Interactions between Arboviruses and the Bacterial and Viral Microbiota in Aedes aegypti and Culex quinquefasciatus. Mbio. e0102122. PMID 36069449 DOI: 10.1128/mbio.01021-22  0.146
2023 Quagebeur R, Dalile B, Raes J, Van Oudenhove L, Verbeke K, Vrieze E. The role of short-chain fatty acids (SCFAs) in regulating stress responses, eating behavior, and nutritional state in anorexia nervosa: protocol for a randomized controlled trial. Journal of Eating Disorders. 11: 191. PMID 37884972 DOI: 10.1186/s40337-023-00917-6  0.145
2023 Deleu S, Arnauts K, Deprez L, Machiels K, Ferrante M, Huys GRB, Thevelein JM, Raes J, Vermeire S. High Acetate Concentration Protects Intestinal Barrier and Exerts Anti-Inflammatory Effects in Organoid-Derived Epithelial Monolayer Cultures from Patients with Ulcerative Colitis. International Journal of Molecular Sciences. 24. PMID 36614212 DOI: 10.3390/ijms24010768  0.144
2023 Lapauw L, Dupont J, Amini N, Vercauteren L, Verschueren S, Tournoy J, Raes J, Gielen E. Trial in Elderly with Musculoskeletal Problems due to Underlying Sarcopenia-Faeces to Unravel the Gut and Inflammation Translationally (TEMPUS-FUGIT): protocol of a cross-sequential study to explore the gut-muscle axis in the development and treatment of sarcopenia in community-dwelling older adults. Bmc Geriatrics. 23: 599. PMID 37752426 DOI: 10.1186/s12877-023-04291-5  0.126
2021 Wauters L, Tito RY, Ceulemans M, Lambaerts M, Accarie A, Rymenans L, Verspecht C, Toth J, Mols R, Augustijns P, Tack J, Vanuytsel T, Raes J. Duodenal Dysbiosis and Relation to the Efficacy of Proton Pump Inhibitors in Functional Dyspepsia. International Journal of Molecular Sciences. 22. PMID 34948413 DOI: 10.3390/ijms222413609  0.126
2022 Schaub AC, Schneider E, Vazquez-Castellanos JF, Schweinfurth N, Kettelhack C, Doll JPK, Yamanbaeva G, Mählmann L, Brand S, Beglinger C, Borgwardt S, Raes J, Schmidt A, Lang UE. Clinical, gut microbial and neural effects of a probiotic add-on therapy in depressed patients: a randomized controlled trial. Translational Psychiatry. 12: 227. PMID 35654766 DOI: 10.1038/s41398-022-01977-z  0.124
2023 Hatcher C, Richenberg G, Waterson S, Nguyen LH, Joshi AD, Carreras-Torres R, Moreno V, Chan AT, Gunter M, Lin Y, Qu C, Song M, Casey G, Figueiredo JC, Gruber SB, ... ... Raes J, et al. Author Correction: Application of Mendelian randomization to explore the causal role of the human gut microbiome in colorectal cancer. Scientific Reports. 13: 12131. PMID 37495615 DOI: 10.1038/s41598-023-38170-1  0.121
2024 Gilbert BTP, Tadeo RYT, Lamacchia C, Studer O, Courvoisier D, Raes J, Finckh A. Gut microbiome and intestinal inflammation in preclinical stages of rheumatoid arthritis. Rmd Open. 10. PMID 38296308 DOI: 10.1136/rmdopen-2023-003589  0.12
2021 Deroover L, Vázquez-Castellanos JF, Vandermeulen G, Luypaerts A, Raes J, Courtin CM, Verbeke K. Wheat bran with reduced particle size increases serum SCFAs in obese subjects without improving health parameters compared with a maltodextrin placebo. The American Journal of Clinical Nutrition. PMID 34224554 DOI: 10.1093/ajcn/nqab196  0.112
2022 Martens PJ, Centelles-Lodeiro J, Ellis D, Cook DP, Sassi G, Verlinden L, Verstuyf A, Raes J, Mathieu C, Gysemans C. High Serum Vitamin D Concentrations, Induced Diet, Trigger Immune and Intestinal Microbiota Alterations Leading to Type 1 Diabetes Protection in NOD Mice. Frontiers in Immunology. 13: 902678. PMID 35784365 DOI: 10.3389/fimmu.2022.902678  0.11
2022 Wauters L, Tito RY, Ceulemans M, Outtier A, Rymenans L, Verspecht C, Sabino J, Ferrante M, Vermeire S, Vanuytsel T, Raes J. Microbiome variance of the small bowel in Crohn's disease. Gut. 72: 1626-1628. PMID 37414433 DOI: 10.1136/gutjnl-2022-327313  0.109
2023 Samaey A, Vázquez-Castellanos JF, Caenepeel C, Evenepoel P, Vermeire S, Raes J, Knops N. Effects of fecal microbiota transplantation for recurrent Clostridium difficile infection in children on kidney replacement therapy: a pilot study. Pediatric Nephrology (Berlin, Germany). PMID 37775582 DOI: 10.1007/s00467-023-06168-6  0.103
2021 Aguilera-Lizarraga J, Florens MV, Viola MF, Jain P, Decraecker L, Appeltans I, Cuende-Estevez M, Fabre N, Van Beek K, Perna E, Balemans D, Stakenborg N, Theofanous S, Bosmans G, Mondelaers SU, ... ... Raes J, et al. Local immune response to food antigens drives meal-induced abdominal pain. Nature. PMID 33442055 DOI: 10.1038/s41586-020-03118-2  0.101
2014 Holvoet T, Van De Wiele T, Boelens J, Raes J, Hindryckx P, De Vos M, De Looze D. Fecal transplantation: Overview of the indications | Transplantatie van fecale microbiota: Oude wijn in nieuwe zakken? Tijdschrift Voor Geneeskunde. 70: 289-297. DOI: 10.2143/TVG.70.06.2001574  0.1
2005 Taylor JS, Raes J. Small-Scale Gene Duplications The Evolution of the Genome. 289-327. DOI: 10.1016/B978-012301463-4/50007-3  0.099
2022 Wauters L, Van Oudenhove L, Accarie A, Geboers K, Geysen H, Toth J, Luypaerts A, Verbeke K, Smokvina T, Raes J, Tack J, Vanuytsel T. CNCM I-3690 decreases subjective academic stress in healthy adults: a randomized placebo-controlled trial. Gut Microbes. 14: 2031695. PMID 35130109 DOI: 10.1080/19490976.2022.2031695  0.084
1980 Raes J, Michelsson K, Despontin M. [Spectrographic analysis of the crying of infants with laryngeal disorders]. Acta Oto-Rhino-Laryngologica Belgica. 34: 224-37. PMID 7234362  0.075
1982 Raes J, Michelsson K, Dehaen F, Despontin M. Cry analysis in infants with infectious and congenital disorders of the larynx. International Journal of Pediatric Otorhinolaryngology. 4: 157-69. PMID 7129785 DOI: 10.1016/0165-5876(82)90091-X  0.073
2000 Wuyts FL, De Bodt MS, Molenberghs G, Remacle M, Heylen L, Millet B, Van Lierde K, Raes J, Van de Heyning PH. The dysphonia severity index: an objective measure of vocal quality based on a multiparameter approach. Journal of Speech, Language, and Hearing Research : Jslhr. 43: 796-809. PMID 10877446 DOI: 10.1044/Jslhr.4303.796  0.07
2022 Doll JPK, Vázquez-Castellanos JF, Schaub AC, Schweinfurth N, Kettelhack C, Schneider E, Yamanbaeva G, Mählmann L, Brand S, Beglinger C, Borgwardt S, Raes J, Schmidt A, Lang UE. Fecal Microbiota Transplantation (FMT) as an Adjunctive Therapy for Depression-Case Report. Frontiers in Psychiatry. 13: 815422. PMID 35250668 DOI: 10.3389/fpsyt.2022.815422  0.063
2023 Raes J. Nifty new tools for microbiome treatment design. Nature Reviews. Gastroenterology & Hepatology. 20: 77-78. PMID 36609547 DOI: 10.1038/s41575-022-00735-2  0.058
1994 Van Dongen HR, Paquier PF, Raes J, Creten WL. An analysis of spontaneous conversational speech fluency in children with acquired aphasia. Cortex; a Journal Devoted to the Study of the Nervous System and Behavior. 30: 619-33. PMID 7535214  0.058
1996 Raes JP, Clement PA. Aerodynamic measurements of voice production. Acta Oto-Rhino-Laryngologica Belgica. 50: 293-8. PMID 9001638  0.055
1986 Raes J, Lebrun Y, Clement P. [Videostroboscopy of the larynx]. Acta Oto-Rhino-Laryngologica Belgica. 40: 421-5. PMID 3751535  0.051
1992 Raes JFM. Inside two commercially available statistical expert systems Statistics and Computing. 2: 55-62. DOI: 10.1007/BF01889583  0.05
2021 Junius S, Mavrogiannis AV, Lemaitre P, Gerbaux M, Staels F, Malviya V, Burton O, Gergelits V, Singh K, Tito Tadeo RY, Raes J, Humblet-Baron S, Liston A, Schlenner SM. Unstable regulatory T cells, enriched for naïve and Nrp1 cells, are purged after fate challenge. Science Immunology. 6. PMID 34301799 DOI: 10.1126/sciimmunol.abe4723  0.049
2019 Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J. Early-Career Scientists Shaping the World. Msystems. 4. PMID 31219787 DOI: 10.1128/mSystems.00196-19  0.038
2014 Frederick ZA, Villani SM, Cooley DR, Biggs AR, Raes JJ, Cox KD. Prevalence and stability of qualitative QoI resistance in populations of venturia inaequalis in the northeastern United States Plant Disease. 98: 1122-1130. DOI: 10.1094/PDIS-10-13-1042-RE  0.036
1989 Herzeel R, Van Langenhove L, Neven S, Raes J. [Preventive cryotherapy of the retina and cataract surgery]. Journal FrançAis D'Ophtalmologie. 12: 433-7. PMID 2636239  0.035
1996 De Bodt M, Wuyts FL, Raes J, Qiu J. Research work of the Belgian Study Group on Voice Disorders 1996. Materials and methods. Acta Oto-Rhino-Laryngologica Belgica. 50: 325-9. PMID 9001641  0.035
2015 Villani SM, Biggs AR, Cooley DR, Raes JJ, Cox KD. Prevalence of myclobutanil resistance and difenoconazole insensitivity in populations of venturia inaequalis Plant Disease. 99: 1526-1536. DOI: 10.1094/PDIS-01-15-0002-RE  0.034
2016 De Bodt M, Van den Steen L, Mertens F, Raes J, Van Bel L, Heylen L, Pattyn J, Gordts F, van de Heyning P. Characteristics of a Dysphonic Population Referred for Voice Assessment and/or Voice Therapy Folia Phoniatrica Et Logopaedica. 178-186. DOI: 10.1159/000369339  0.033
1984 Michelsson K, Raes J, Rinne A. Cry score--an aid in infant diagnosis. Folia Phoniatrica. 36: 219-24. PMID 6510846  0.029
1980 Raes J, Michelsson K, Kaiser G. Spectographic analysis of infant cries: An aid to neuropaediatric evaluation and diagnosis | SPEKTOGRAPHISCHE BABYSCHREIANALYSE: EIN HILFSMITTEL ZUR NEUROPADIATRISCHEN EVALUATION UND DIAGNOSE Sprache Stimme Gehor. 4: 138-146.  0.028
1987 Janssens GK, Raes J, Staelens D. An implementation approach for local area networks Computer Networks and Isdn Systems. 14: 365-372. DOI: 10.1016/0169-7552(87)90075-4  0.027
1974 Crepy C, Soubiran JM, Raes J. Treatment of prognathism by sagittal symphyseal resection of the mandible | TRAITEMENT DU PROGNATHISME PAR LA RESECTION SAGITTALE SYMPHYSAIRE DE LA MANDIBULE Rev.Stomatol.. 75: 753-755.  0.022
1996 Raes JP, Clement PA. Comments to the BSGVD: results from aerodynamic measurements. Acta Oto-Rhino-Laryngologica Belgica. 50: 343-4. PMID 9001643  0.017
1991 Godefroy O, Raes J, Vansteenkiste P, Rondepierre P, Leys D. Hemicrania continua. A case with focal symptoms? | HEMICRANIA CONTINUA. EEN GEVAL MET FOCALE SYMPTOMEN? Tijdschrift Voor Geneeskunde. 47: 931-933.  0.01
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