Eoghan Harrington - Publications

Stanford University School of Medicine, Palo Alto, CA, United States 

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Grochowski CM, Bengtsson JD, Du H, Gandhi M, Lun MY, Mehaffey MG, Park K, Höps W, Benito-Garagorri E, Hasenfeld P, Korbel JO, Mahmoud M, Paulin LF, Jhangiani SN, Muzny DM, ... ... Harrington E, et al. Break-induced replication underlies formation of inverted triplications and generates unexpected diversity in haplotype structures. Biorxiv : the Preprint Server For Biology. PMID 37873367 DOI: 10.1101/2023.10.02.560172  0.527
2022 Deshpande AS, Ulahannan N, Pendleton M, Dai X, Ly L, Behr JM, Schwenk S, Liao W, Augello MA, Tyer C, Rughani P, Kudman S, Tian H, Otis HG, Adney E, ... ... Harrington E, et al. Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing. Nature Biotechnology. PMID 35637420 DOI: 10.1038/s41587-022-01289-z  0.328
2020 Beaulaurier J, Luo E, Eppley JM, Den Uyl P, Dai X, Burger A, Turner DJ, Pendleton M, Juul S, Harrington E, DeLong EF. Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities. Genome Research. PMID 32075851 DOI: 10.1101/Gr.251686.119  0.337
2020 Choi JY, Lye ZN, Groen SC, Dai X, Rughani P, Zaaijer S, Harrington ED, Juul S, Purugganan MD. Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. Genome Biology. 21: 21. PMID 32019604 DOI: 10.1186/s13059-020-1938-2  0.313
2019 Carvalho CMB, Coban-Akdemir Z, Hijazi H, Yuan B, Pendleton M, Harrington E, Beaulaurier J, Juul S, Turner DJ, Kanchi RS, Jhangiani SN, Muzny DM, Gibbs RA, Stankiewicz P, et al. Interchromosomal template-switching as a novel molecular mechanism for imprinting perturbations associated with Temple syndrome. Genome Medicine. 11: 25. PMID 31014393 DOI: 10.1186/S13073-019-0633-Y  0.316
2012 Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC. Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Research. 22: 1107-19. PMID 22434425 DOI: 10.1101/Gr.131482.111  0.323
2010 Harrington ED, Arumugam M, Raes J, Bork P, Relman DA. SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics (Oxford, England). 26: 2979-80. PMID 20966005 DOI: 10.1093/Bioinformatics/Btq564  0.739
2010 Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics (Oxford, England). 26: 2977-8. PMID 20959381 DOI: 10.1093/Bioinformatics/Btq536  0.728
2010 Suyama M, Harrington ED, Vinokourova S, von Knebel Doeberitz M, Ohara O, Bork P. A network of conserved co-occurring motifs for the regulation of alternative splicing. Nucleic Acids Research. 38: 7916-26. PMID 20702423 DOI: 10.1093/Nar/Gkq705  0.689
2009 Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boué S, Eyras E, Plass M, Lopez F, et al. ASTD: The Alternative Splicing and Transcript Diversity database. Genomics. 93: 213-20. PMID 19059335 DOI: 10.1016/J.Ygeno.2008.11.003  0.604
2008 Harrington ED, Bork P. Sircah: a tool for the detection and visualization of alternative transcripts. Bioinformatics (Oxford, England). 24: 1959-60. PMID 18635569 DOI: 10.1093/Bioinformatics/Btn361  0.531
2008 Pallejà A, Harrington ED, Bork P. Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? Bmc Genomics. 9: 335. PMID 18627618 DOI: 10.1186/1471-2164-9-335  0.673
2008 Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P. A molecular study of microbe transfer between distant environments. Plos One. 3: e2607. PMID 18612393 DOI: 10.1371/Journal.Pone.0002607  0.741
2008 Harrington ED, Jensen LJ, Bork P. Predicting biological networks from genomic data. Febs Letters. 582: 1251-8. PMID 18294967 DOI: 10.1016/J.Febslet.2008.02.033  0.674
2008 Frishman D, Albrecht M, Blankenburg H, Bork P, Harrington ED, Hermjakob H, Juhl Jensen L, Juan DA, Lengauer T, Pagel P, Schachter V, Valencia A. Protein-protein interactions: Analysis and prediction Modern Genome Annotation: the Biosapiens Network. 353-410. DOI: 10.1007/978-3-211-75123-7_17  0.519
2007 Harrington ED, Singh AH, Doerks T, Letunic I, von Mering C, Jensen LJ, Raes J, Bork P. Quantitative assessment of protein function prediction from metagenomics shotgun sequences. Proceedings of the National Academy of Sciences of the United States of America. 104: 13913-8. PMID 17717083 DOI: 10.1073/Pnas.0702636104  0.705
2007 Raes J, Harrington ED, Singh AH, Bork P. Protein function space: viewing the limits or limited by our view? Current Opinion in Structural Biology. 17: 362-9. PMID 17574832 DOI: 10.1016/J.Sbi.2007.05.010  0.718
2006 Suyama M, Harrington E, Bork P, Torrents D. Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes. Plos Computational Biology. 2: e76. PMID 16846249 DOI: 10.1371/Journal.Pcbi.0020076  0.721
2005 Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P. Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. Nucleic Acids Research. 33: 946-54. PMID 15716312 DOI: 10.1093/Nar/Gki236  0.768
2005 Ciccarelli FD, von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P. Complex genomic rearrangements lead to novel primate gene function. Genome Research. 15: 343-51. PMID 15710750 DOI: 10.1101/Gr.3266405  0.767
2004 Kim H, Klein R, Majewski J, Ott J, Harrington ED, Boue S, Valcarcel J, Reich JG, Bork P. Estimating rates of alternative splicing in mammals and invertebrates (multiple letters) Nature Genetics. 36: 915-917. PMID 15340420 DOI: 10.1038/Ng0904-915  0.472
2004 Harrington ED, Boue S, Valcarcel J, Reich JG, Bork P. Estimating rates of alternative splicing in mammals and invertebrates Nature Genetics. 36: 916-917. DOI: 10.1038/ng0904-916  0.67
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