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Martin Lercher - Related publications

Affiliations: 
Heinrich Heine University Düsseldorf, Düsseldorf, Nordrhein-Westfalen, Germany 
Website:
https://www.cs.hhu.de/en/research-groups/computational-cell-biology/our-team/team.html
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Safder I, Shao G, Sheng Z, Hu P, Tang S. Genome-wide identification studies - A primer to explore new genes in plant species. Plant Biology (Stuttgart, Germany). PMID 34558163 DOI: 10.1111/plb.13340   
2021 Zeng WQ, Yan HJ, Wu YZ, Wang RR, Xiao XF, Qi ZC, Yan XL. The complete chloroplast genome sequence of Japanese buttercup Thunb. Mitochondrial Dna. Part B, Resources. 6: 3186-3187. PMID 34660897 DOI: 10.1080/23802359.2021.1987166   
2021 Fang Y, Jiang J, Du Q, Luo L, Li X, Xie X. Cytochrome P450 Superfamily: Evolutionary and Functional Divergence in Sorghum () Stress Resistance. Journal of Agricultural and Food Chemistry. PMID 34495670 DOI: 10.1021/acs.jafc.1c03701   
2021 Cui M, Lin L, Guo H, Zhang D, Zhang J, Cheng W, Song X, Xing Z, Long Y. /computational analysis of mevalonate pyrophosphate decarboxylase gene families in . Open Life Sciences. 16: 1022-1036. PMID 34616915 DOI: 10.1515/biol-2021-0103   
2021 Hall RJ, Whelan FJ, Cummins EA, Connor C, McNally A, McInerney JO. Gene-gene relationships in an accessory genome are linked to function and mobility. Microbial Genomics. 7. PMID 34499026 DOI: 10.1099/mgen.0.000650   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Singh S, Chhapekar SS, Ma Y, Rameneni JJ, Oh SH, Kim J, Lim YP, Choi SR. Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in , , and and Their Expression Profiling in in Response to Multiple Hormones and Abiotic Stresses. International Journal of Molecular Sciences. 22. PMID 34638707 DOI: 10.3390/ijms221910367   
2021 Kesawat MS, Kherawat BS, Singh A, Dey P, Kabi M, Debnath D, Saha D, Khandual A, Rout S, Manorama, Ali A, Palem RR, Gupta R, Kadam AA, Kim HU, et al. Genome-Wide Identification and Characterization of the Brassinazole-resistant () Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat ( L.). International Journal of Molecular Sciences. 22. PMID 34445448 DOI: 10.3390/ijms22168743   
2021 Yamamoto T. Genomic Aberrations Associated with the Pathophysiological Mechanisms of Neurodevelopmental Disorders. Cells. 10. PMID 34571966 DOI: 10.3390/cells10092317   
2021 Wakao S, Shih PM, Guan K, Schackwitz W, Ye J, Patel D, Shih RM, Dent RM, Chovatia M, Sharma A, Martin J, Wei CL, Niyogi KK. Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. Plos Genetics. 17: e1009725. PMID 34492001 DOI: 10.1371/journal.pgen.1009725   
2021 Yates TB, Feng K, Zhang J, Singan V, Jawdy SS, Gunter LE, Ranjan P, Abraham PE, Barry K, Lipzen A, Pan C, Schmutz J, Chen JG, Tuskan GA, Muchero W. The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa. Genome Biology and Evolution. PMID 34469536 DOI: 10.1093/gbe/evab198   
2021 Tong YB, Shi MW, Qian SH, Chen YJ, Luo ZH, Tu YX, Xiong YL, Geng YJ, Chen C, Chen ZX. GenOrigin: A comprehensive protein-coding gene origination database on the evolutionary timescale of life. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34538772 DOI: 10.1016/j.jgg.2021.03.018   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Simonsen AK. Environmental stress leads to genome streamlining in a widely distributed species of soil bacteria. The Isme Journal. PMID 34408268 DOI: 10.1038/s41396-021-01082-x   
2021 Rivard EL, Ludwig AG, Patel PH, Grandchamp A, Arnold SE, Berger A, Scott EM, Kelly BJ, Mascha GC, Bornberg-Bauer E, Findlay GD. A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. Plos Genetics. 17: e1009787. PMID 34478447 DOI: 10.1371/journal.pgen.1009787   
2021 Singh A, Schermann G, Reislöhner S, Kellner N, Hurt E, Brunner M. Global Transcriptome Characterization and Assembly of the Thermophilic Ascomycete . Genes. 12. PMID 34680944 DOI: 10.3390/genes12101549   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Zhou P, Wang L, Liu H, Li C, Li Z, Wang J, Tan X. CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. Nucleic Acids Research. PMID 34614159 DOI: 10.1093/nar/gkab891   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Morgenthaler AB, Fritts RK, Copley SD. Amplicon remodeling and genomic mutations drive population dynamics after segmental amplification. Molecular Biology and Evolution. PMID 34581806 DOI: 10.1093/molbev/msab289   
2021 Agarwal G, Choudhary D, Stice SP, Myers BK, Gitaitis RD, Venter SN, Kvitko BH, Dutta B. Pan-Genome-Wide Analysis of Identified Genes Linked to Pathogenicity in Onion. Frontiers in Microbiology. 12: 684756. PMID 34489883 DOI: 10.3389/fmicb.2021.684756   
2021 Tu JL, Bai XY, Xu YL, Li N, Xu JW. Targeted gene insertion and replacement in the basidiomycete by inactivation of non-homologous end joining using CRISPR/Cas9. Applied and Environmental Microbiology. AEM0151021. PMID 34524900 DOI: 10.1128/AEM.01510-21   
2021 Zhang X, He C, Zong D. The complete mitochondrial genome of var. . Mitochondrial Dna. Part B, Resources. 6: 2858-2859. PMID 34514154 DOI: 10.1080/23802359.2021.1972480   
2021 Liu J, Wang J, Wang M, Zhao J, Zheng Y, Zhang T, Xue L, Lei J. Genome-Wide Analysis of the R2R3-MYB Gene Family in × and Its Function Identification During Anthocyanins Biosynthesis in Pink-Flowered Strawberry. Frontiers in Plant Science. 12: 702160. PMID 34527006 DOI: 10.3389/fpls.2021.702160   
2021 Jin DP, Kim JS, Ku YB, Lim CE. The complete chloroplast genome sequence of (Orobanchaceae), an endemic and hemi-parasitic herb in Korea. Mitochondrial Dna. Part B, Resources. 6: 3122-3124. PMID 34651076 DOI: 10.1080/23802359.2021.1984330   
2021 Dong NL, Wang W, Wang Z, Zhang YY, Shao YZ, Sun HZ. Characterization of the complete plastid genome of (Pinaceae) from southwest China. Mitochondrial Dna. Part B, Resources. 6: 2772-2774. PMID 34471700 DOI: 10.1080/23802359.2021.1969699   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Bano N, Fakhrah S, Mohanty CS, Bag SK. Genome-Wide Identification and Evolutionary Analysis of Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress. Frontiers in Plant Science. 12: 667929. PMID 34367198 DOI: 10.3389/fpls.2021.667929   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Ma X, Yan H, Yang J, Liu Y, Li Z, Sheng M, Cao Y, Yu X, Yi X, Xu W, Su Z. PlantGSAD: a comprehensive gene set annotation database for plant species. Nucleic Acids Research. PMID 34534340 DOI: 10.1093/nar/gkab794   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Bian C, Li R, Wen Z, Ge W, Shi Q. Phylogenetic Analysis of Core Melanin Synthesis Genes Provides Novel Insights Into the Molecular Basis of Albinism in Fish. Frontiers in Genetics. 12: 707228. PMID 34422008 DOI: 10.3389/fgene.2021.707228   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Heckel DG. Perspectives on gene copy number variation and pesticide resistance. Pest Management Science. PMID 34480789 DOI: 10.1002/ps.6631   
2021 Gao Y, Yang Q, Yan X, Wu X, Yang F, Li J, Wei J, Ni J, Ahmad M, Bai S, Teng Y. High-quality genome assembly of 'Cuiguan' pear (Pyrus pyrifolia) as a reference genome for identifying regulatory genes and epigenetic modifications responsible for bud dormancy. Horticulture Research. 8: 197. PMID 34465760 DOI: 10.1038/s41438-021-00632-w   
2021 Jiang T, Yin Z, Cai R, Yu H, Lu Q, Zhao S, Tian Y, Yan Y, Chen X, Guo J. Chromosomal-level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). Genome Biology and Evolution. PMID 34623414 DOI: 10.1093/gbe/evab232   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Senthamizhan V, Ravindran B, Raman K. NetGenes: A Database of Essential Genes Predicted Using Features From Interaction Networks. Frontiers in Genetics. 12: 722198. PMID 34630517 DOI: 10.3389/fgene.2021.722198   
2021 Smit SJ, Vivier MA, Young PR. Seeing the Forest through the (Phylogenetic) Trees: Functional Characterisation of Grapevine Terpene Synthase () Paralogues and Orthologues. Plants (Basel, Switzerland). 10. PMID 34451565 DOI: 10.3390/plants10081520   
2021 Koseoglou E, van der Wolf JM, Visser RGF, Bai Y. Susceptibility reversed: modified plant susceptibility genes for resistance to bacteria. Trends in Plant Science. PMID 34400073 DOI: 10.1016/j.tplants.2021.07.018   
2021 Zhou Q, Jiao L, Li W, Hu Z, Li Y, Zhang H, Yang M, Xu L, Yan Y. A Novel Cre/-Based Genetic Tool for Repeated, Targeted and Markerless Gene Integration in . International Journal of Molecular Sciences. 22. PMID 34639080 DOI: 10.3390/ijms221910739   
2021 Liu N, Shi YE, Li J, Zhu M, Zhang T. Identification and genome analysis of strain JLU460ET, a novel steroid-degrading bacterium. 3 Biotech. 11: 404. PMID 34458066 DOI: 10.1007/s13205-021-02949-8   
2021 Gao Y, Yin S, Zhu L. The mitochondrial genome of the yellow-vented flowerpecker, (Dicaeidae) from southwestern China. Mitochondrial Dna. Part B, Resources. 6: 2860-2862. PMID 34514155 DOI: 10.1080/23802359.2021.1972483   
2021 Hao J, Liang Y, Zhu M, Ping J, Feng P, Su Y, Wang T. The complete chloroplast genome of L. (Ophioglossaceae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2730-2731. PMID 34447885 DOI: 10.1080/23802359.2021.1966333   
2021 Kim P, Tan H, Liu J, Yang M, Zhou X. FusionAI: Predicting fusion breakpoint from DNA sequence with deep learning. Iscience. 24: 103164. PMID 34646994 DOI: 10.1016/j.isci.2021.103164   
2021 Zhang Y, Deng C, Yang J, Wang D, Deng G. The complete chloroplast genome of a medicinal plant Burm.f. (Loranthaceae). Mitochondrial Dna. Part B, Resources. 6: 2635-2637. PMID 34435106 DOI: 10.1080/23802359.2021.1962760   
2021 Avsec Ž, Agarwal V, Visentin D, Ledsam JR, Grabska-Barwinska A, Taylor KR, Assael Y, Jumper J, Kohli P, Kelley DR. Effective gene expression prediction from sequence by integrating long-range interactions. Nature Methods. 18: 1196-1203. PMID 34608324 DOI: 10.1038/s41592-021-01252-x