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Parantu Shah - Publications

Biostatistics and Computational Biology Harvard School of Public Health, Boston, MA, United States 

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ling X, Liu Y, Huang Z, Shah PK, Li C. A graphical article-level metric for intuitive comparison of large-scale literatures Scientometrics. 106: 41-50. DOI: 10.1007/s11192-015-1782-4  1
2015 Alagarasu K, Bachal RV, Damle I, Shah PS, Cecilia D. Association of FCGR2A p.R131H and CCL2 c.-2518 A>G gene variants with thrombocytopenia in patients with dengue virus infection. Human Immunology. 76: 819-22. PMID 26429304 DOI: 10.1016/j.humimm.2015.09.042  0.48
2015 Alagarasu K, Bachal RV, Shah PS, Cecilia D. Profile of killer cell immunoglobulin-like receptor and its human leucocyte antigen ligands in dengue-infected patients from Western India. International Journal of Immunogenetics. PMID 26385514 DOI: 10.1111/iji.12231  0.48
2015 Bachal R, Alagarasu K, Singh A, Salunke A, Shah P, Cecilia D. Higher levels of dengue-virus-specific IgG and IgA during pre-defervescence associated with primary dengue hemorrhagic fever. Archives of Virology. PMID 26175069 DOI: 10.1007/s00705-015-2519-7  0.48
2015 Vangamudi B, Paul TA, Shah PK, Kost-Alimova M, Nottebaum L, Shi X, Zhan Y, Leo E, Mahadeshwar HS, Protopopov A, Futreal A, Tieu TN, Peoples M, Heffernan TP, Marszalek JR, et al. The SMARCA2/4 ATPase domain surpasses the bromodomain as a drug target in SWI/SNF mutant cancers: Insights from cDNA rescue and PFI-3 inhibitor studies. Cancer Research. PMID 26139243 DOI: 10.1158/0008-5472.CAN-14-3798  1
2015 Alagarasu K, Bachal RV, Tillu H, Mulay AP, Kakade MB, Shah PS, Cecilia D. Association of combinations of interleukin-10 and pro-inflammatory cytokine gene polymorphisms with dengue hemorrhagic fever. Cytokine. 74: 130-6. PMID 25890879 DOI: 10.1016/j.cyto.2015.03.021  0.48
2015 Alagarasu K, Memane RS, Shah PS. Polymorphisms in the retinoic acid-1 like-receptor family of genes and their association with clinical outcome of dengue virus infection. Archives of Virology. 160: 1555-60. PMID 25850761 DOI: 10.1007/s00705-015-2417-z  0.48
2015 Pettazzoni P, Viale A, Shah P, Carugo A, Ying H, Wang H, Genovese G, Seth S, Minelli R, Green T, Huang-Hobbs E, Corti D, Sanchez N, Nezi L, Marchesini M, et al. Genetic events that limit the efficacy of MEK and RTK inhibitor therapies in a mouse model of KRAS-driven pancreatic cancer. Cancer Research. 75: 1091-101. PMID 25736685 DOI: 10.1158/0008-5472.CAN-14-1854  1
2015 Pathiraja TN, Thakkar KN, Jiang S, Stratton S, Liu Z, Gagea M, Shi X, Shah PK, Phan L, Lee MH, Andersen J, Stampfer M, Barton MC. TRIM24 links glucose metabolism with transformation of human mammary epithelial cells. Oncogene. 34: 2836-45. PMID 25065590 DOI: 10.1038/onc.2014.220  1
2014 Li L, Chang W, Yang G, Ren C, Park S, Karantanos T, Karanika S, Wang J, Yin J, Shah PK, Takahiro H, Dobashi M, Zhang W, Efstathiou E, Maity SN, et al. Targeting poly(ADP-ribose) polymerase and the c-Myb-regulated DNA damage response pathway in castration-resistant prostate cancer. Science Signaling. 7: ra47. PMID 24847116 DOI: 10.1126/scisignal.2005070  1
2014 Wang X, Yan Z, Fulciniti M, Li Y, Gkotzamanidou M, Amin SB, Shah PK, Zhang Y, Munshi NC, Li C. Transcription factor-pathway coexpression analysis reveals cooperation between SP1 and ESR1 on dysregulating cell cycle arrest in non-hyperdiploid multiple myeloma Leukemia. 28: 894-903. PMID 23925045 DOI: 10.1038/leu.2013.233  1
2013 Samur MK, Shah PK, Wang X, Minvielle S, Magrangeas F, Avet-Loiseau H, Munshi NC, Li C. The shaping and functional consequences of the dosage effect landscape in multiple myeloma Bmc Genomics. 14. PMID 24088394 DOI: 10.1186/1471-2164-14-672  1
2013 Li Y, Wang X, Zheng H, Wang C, Minvielle S, Magrangeas F, Avet-Loiseau H, Shah PK, Zhang Y, Munshi NC, Li C. Classify Hyperdiploidy Status of Multiple Myeloma Patients Using Gene Expression Profiles Plos One. 8. PMID 23554930 DOI: 10.1371/journal.pone.0058809  1
2013 Samur MK, Yan Z, Wang X, Cao Q, Munshi NC, Li C, Shah PK. canEvolve: A Web Portal for Integrative Oncogenomics Plos One. 8. PMID 23418540 DOI: 10.1371/journal.pone.0056228  1
2012 Chauhan D, Tian Z, Nicholson B, Kumar KG, Zhou B, Carrasco R, McDermott JL, Leach CA, Fulcinniti M, Kodrasov MP, Weinstock J, Kingsbury WD, Hideshima T, Shah PK, Minvielle S, et al. A small molecule inhibitor of ubiquitin-specific protease-7 induces apoptosis in multiple myeloma cells and overcomes bortezomib resistance. Cancer Cell. 22: 345-58. PMID 22975377 DOI: 10.1016/j.ccr.2012.08.007  1
2012 Yan Z, Shah PK, Amin SB, Samur MK, Huang N, Wang X, Misra V, Ji H, Gabuzda D, Li C. Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers. Nucleic Acids Research. 40: e135. PMID 22645320 DOI: 10.1093/nar/gks395  1
2012 Huang N, Shah PK, Li C. Lessons from a decade of integrating cancer copy number alterations with gene expression profiles Briefings in Bioinformatics. 13: 305-316. PMID 21949216 DOI: 10.1093/bib/bbr056  1
2012 Baniwal SK, Shah PK, Shi Y, Haduong JH, DeClerck YA, Gabet Y, Frenkel B. Runx2 promotes both osteoblastogenesis and novel osteoclastogenic signals in ST2 mesenchymal progenitor cells Osteoporosis International. 23: 1399-1413. PMID 21881969 DOI: 10.1007/s00198-011-1728-5  1
2011 Ganter GK, Panaitiu AE, Desilets JB, Davis-Heim JA, Fisher EA, Tan LC, Heinrich R, Buchanan EB, Brooks KM, Kenney MT, Verde MG, Downey J, Adams AM, Grenier JS, Maddula S, ... Shah P, et al. Drosophila male courtship behavior is modulated by ecdysteroids. Journal of Insect Physiology. 57: 1179-84. PMID 21704633 DOI: 10.1016/j.jinsphys.2011.05.007  1
2011 Wang Y, Wu W, Negre NN, White KP, Li C, Shah PK. Determinants of antigenicity and specificity in immune response for protein sequences. Bmc Bioinformatics. 12: 251. PMID 21693021 DOI: 10.1186/1471-2105-12-251  1
2011 Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, ... ... Shah PK, et al. A cis-regulatory map of the Drosophila genome. Nature. 471: 527-31. PMID 21430782 DOI: 10.1038/nature09990  1
2011 Amin SB, Shah PK, Yan A, Adamia S, Minvielle S, Avet-Loiseau H, Munshi NC, Li C. The dChip survival analysis module for microarray data. Bmc Bioinformatics. 12: 72. PMID 21388547 DOI: 10.1186/1471-2105-12-72  1
2010 Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/journal.pgen.1000814  1
2009 Tian F, Shah PK, Liu X, Negre N, Chen J, Karpenko O, White KP, Grossman RL. Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. Bioinformatics (Oxford, England). 25: 3001-4. PMID 19656951 DOI: 10.1093/bioinformatics/btp469  1
2008 Hua S, Kallen CB, Dhar R, Baquero MT, Mason CE, Russell BA, Shah PK, Liu J, Khramtsov A, Tretiakova MS, Krausz TN, Olopade OI, Rimm DL, White KP. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Molecular Systems Biology. 4: 188. PMID 18414489 DOI: 10.1038/msb.2008.25  1
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/j.gene.2007.10.012  1
2007 Rodriguez AA, Bompada T, Syed M, Shah PK, Maltsev N. Evolutionary analysis of enzymes using Chisel. Bioinformatics (Oxford, England). 23: 2961-8. PMID 17855417 DOI: 10.1093/bioinformatics/btm421  1
2006 Campillos M, Doerks T, Shah PK, Bork P. Computational characterization of multiple Gag-like human proteins. Trends in Genetics : Tig. 22: 585-9. PMID 16979784 DOI: 10.1016/j.tig.2006.09.006  1
2006 Shah PK, Bork P. LSAT: learning about alternative transcripts in MEDLINE. Bioinformatics (Oxford, England). 22: 857-65. PMID 16410322 DOI: 10.1093/bioinformatics/btk044  1
2006 Müller A, Schackert HK, Lange B, Rüschoff J, Füzesi L, Willert J, Burfeind P, Shah P, Becker H, Epplen JT, Stemmler S. A novel MSH2 germline mutation in homozygous state in two brothers with colorectal cancers diagnosed at the age of 11 and 12 years. American Journal of Medical Genetics. Part A. 140: 195-9. PMID 16372347 DOI: 10.1002/ajmg.a.31070  1
2005 Shah PK, Jensen LJ, Boué S, Bork P. Extraction of transcript diversity from scientific literature. Plos Computational Biology. 1: e10. PMID 16103899 DOI: 10.1371/journal.pcbi.0010010  1
2005 Shah PK, Aloy P, Bork P, Russell RB. Structural similarity to bridge sequence space: finding new families on the bridges. Protein Science : a Publication of the Protein Society. 14: 1305-14. PMID 15840833 DOI: 10.1110/ps.041187405  1
2004 Wattarujeekrit T, Shah PK, Collier N. PASBio: predicate-argument structures for event extraction in molecular biology. Bmc Bioinformatics. 5: 155. PMID 15494078 DOI: 10.1186/1471-2105-5-155  1
2003 Shah PK, Perez-Iratxeta C, Bork P, Andrade MA. Information extraction from full text scientific articles: where are the keywords? Bmc Bioinformatics. 4: 20. PMID 12775220 DOI: 10.1186/1471-2105-4-20  1
2001 Shah PK, Buslje CM, Sowdhamini R. Structural determinants of binding and specificity in transforming growth factor-receptor interactions Proteins: Structure, Function and Genetics. 45: 408-420. PMID 11746688 DOI: 10.1002/prot.10010  1
2001 Shah PK, Sowdhamini R. Structural understanding of the transmembrane domains of inositol triphosphate receptors and ryanodine receptors towards calcium channeling Protein Engineering. 14: 867-874. PMID 11742105  1
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