| Year |
Citation |
Score |
| 2023 |
Saini JS, Manni M, Hassler C, Cable RN, Duhaime MB, Zdobnov EM. Genomic insights into the coupling of a Chlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno. The Isme Journal. PMID 37031343 DOI: 10.1038/s41396-023-01396-y |
0.433 |
|
| 2022 |
Kuznetsov D, Tegenfeldt F, Manni M, Seppey M, Berkeley M, Kriventseva EV, Zdobnov EM. OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity. Nucleic Acids Research. PMID 36350662 DOI: 10.1093/nar/gkac998 |
0.502 |
|
| 2022 |
Kieser S, Zdobnov EM, Trajkovski M. Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart. Plos Computational Biology. 18: e1009947. PMID 35259160 DOI: 10.1371/journal.pcbi.1009947 |
0.386 |
|
| 2021 |
Manni M, Berkeley MR, Seppey M, Zdobnov EM. BUSCO: Assessing Genomic Data Quality and Beyond. Current Protocols. 1: e323. PMID 34936221 DOI: 10.1002/cpz1.323 |
0.452 |
|
| 2021 |
Manni M, Berkeley MR, Seppey M, Simão FA, Zdobnov EM. BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Molecular Biology and Evolution. PMID 34320186 DOI: 10.1093/molbev/msab199 |
0.503 |
|
| 2021 |
Rüeger S, Hammer C, Loetscher A, McLaren PJ, Lawless D, Naret O, Depledge DP, Morfopoulou S, Breuer J, Zdobnov E, Fellay J. The influence of human genetic variation on Epstein-Barr virus sequence diversity. Scientific Reports. 11: 4586. PMID 33633271 DOI: 10.1038/s41598-021-84070-7 |
0.385 |
|
| 2020 |
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, ... ... Zdobnov EM, et al. Correction to: Genome-enabled insights into the biology of thrips as crop pests. Bmc Biology. 18: 169. PMID 33198778 DOI: 10.1186/s12915-020-00915-z |
0.367 |
|
| 2020 |
Zdobnov EM, Kuznetsov D, Tegenfeldt F, Manni M, Berkeley M, Kriventseva EV. OrthoDB in 2020: evolutionary and functional annotations of orthologs. Nucleic Acids Research. PMID 33196836 DOI: 10.1093/nar/gkaa1009 |
0.34 |
|
| 2020 |
Manni M, Zdobnov EM. A Novel Anphevirus in Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway. Viruses. 12. PMID 33172032 DOI: 10.3390/v12111264 |
0.337 |
|
| 2020 |
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, ... ... Zdobnov EM, et al. Genome-enabled insights into the biology of thrips as crop pests. Bmc Biology. 18: 142. PMID 33070780 DOI: 10.1186/s12915-020-00862-9 |
0.332 |
|
| 2020 |
Kieser S, Brown J, Zdobnov EM, Trajkovski M, McCue LA. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. Bmc Bioinformatics. 21: 257. PMID 32571209 DOI: 10.1186/s12859-020-03585-4 |
0.508 |
|
| 2020 |
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, ... ... Zdobnov EM, et al. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biology and Evolution. PMID 32442304 DOI: 10.1093/Gbe/Evaa106 |
0.484 |
|
| 2020 |
Starikova EV, Tikhonova PO, Prianichnikov NA, Rands CM, Zdobnov EM, Ilina EN, Govorun VM. Phigaro: high throughput prophage sequence annotation. Bioinformatics (Oxford, England). PMID 32311023 DOI: 10.1093/bioinformatics/btaa250 |
0.41 |
|
| 2020 |
Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, ... ... Zdobnov EM, et al. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. Bmc Genomics. 21: 227. PMID 32171258 DOI: 10.1186/S12864-020-6510-7 |
0.303 |
|
| 2020 |
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Zdobnov EM, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7 |
0.492 |
|
| 2020 |
Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, ... ... Zdobnov E, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6 |
0.597 |
|
| 2019 |
L'Huillier AG, Brito F, Wagner N, Cordey S, Zdobnov E, Posfay-Barbe KM, Kaiser L. Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease. Frontiers in Pediatrics. 7: 524. PMID 31921732 DOI: 10.3389/Fped.2019.00524 |
0.315 |
|
| 2019 |
Manni M, Simao FA, Robertson HM, Gabaglio MA, Waterhouse RM, Misof B, Niehuis O, Szucsich NU, Zdobnov EM. The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations. Genome Biology and Evolution. PMID 31778187 DOI: 10.1093/Gbe/Evz260 |
0.506 |
|
| 2019 |
Rands CM, Brüssow H, Zdobnov EM. Comparative genomics groups phages of Negativicutes and classical Firmicutes despite different Gram-staining properties. Environmental Microbiology. PMID 31314945 DOI: 10.1111/1462-2920.14746 |
0.404 |
|
| 2019 |
Seppey M, Manni M, Zdobnov EM. BUSCO: Assessing Genome Assembly and Annotation Completeness. Methods in Molecular Biology (Clifton, N.J.). 1962: 227-245. PMID 31020564 DOI: 10.1007/978-1-4939-9173-0_14 |
0.486 |
|
| 2019 |
Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, ... ... Zdobnov EM, et al. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology. 20: 64. PMID 30935422 DOI: 10.1186/S13059-019-1660-0 |
0.418 |
|
| 2019 |
Waterhouse RM, Seppey M, Simão FA, Zdobnov EM. Using BUSCO to Assess Insect Genomic Resources. Methods in Molecular Biology (Clifton, N.J.). 1858: 59-74. PMID 30414111 DOI: 10.1007/978-1-4939-8775-7_6 |
0.487 |
|
| 2018 |
Kriventseva EV, Kuznetsov D, Tegenfeldt F, Manni M, Dias R, Simão FA, Zdobnov EM. OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs. Nucleic Acids Research. PMID 30395283 DOI: 10.1093/nar/gky1053 |
0.511 |
|
| 2018 |
Guzina J, Chen WH, Stankovic T, Djordjevic M, Zdobnov E, Djordjevic M. Analysis Suggests Common Appearance of scaRNAs in Type II Systems and Their Association With Bacterial Virulence. Frontiers in Genetics. 9: 474. PMID 30386377 DOI: 10.3389/Fgene.2018.00474 |
0.572 |
|
| 2018 |
Starikova EV, Prianichnikov NA, Zdobnov E, Govorun VM. Bioinformatics Analysis of Antimicrobial Resistance Genes and Prophages Colocalized in Human Gut Metagenomes Biochemistry (Moscow), Supplement Series B: Biomedical Chemistry. 12: 114-118. DOI: 10.18097/Pbmc20176306508 |
0.346 |
|
| 2017 |
Waterhouse RM, Seppey M, Simão FA, Manni M, Ioannidis P, Klioutchnikov G, Kriventseva EV, Zdobnov EM. BUSCO applications from quality assessments to gene prediction and phylogenomics. Molecular Biology and Evolution. PMID 29220515 DOI: 10.1093/molbev/msx319 |
0.48 |
|
| 2017 |
Djordjevic M, Djordjevic M, Zdobnov E. Scoring Targets of Transcription in Bacteria Rather than Focusing on Individual Binding Sites. Frontiers in Microbiology. 8: 2314. PMID 29213263 DOI: 10.3389/Fmicb.2017.02314 |
0.31 |
|
| 2017 |
Ioannidis P, Simao FA, Waterhouse RM, Manni M, Seppey M, Robertson HM, Misof B, Niehuis O, Zdobnov EM. Genomic features of the damselfly Calopteryx splendens representing a sister clade to most insect orders. Genome Biology and Evolution. PMID 28137743 DOI: 10.1093/Gbe/Evx006 |
0.56 |
|
| 2016 |
Zdobnov EM, Tegenfeldt F, Kuznetsov D, Waterhouse RM, Simão FA, Ioannidis P, Seppey M, Loetscher A, Kriventseva EV. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. Nucleic Acids Research. PMID 27899580 DOI: 10.1093/nar/gkw1119 |
0.398 |
|
| 2016 |
McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, ... ... Zdobnov EM, et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology. 17: 227. PMID 27832824 DOI: 10.1186/S13059-016-1088-8 |
0.427 |
|
| 2016 |
Hoy MA, Waterhouse RM, Wu K, Estep AS, Ioannidis P, Palmer WJ, Pomerantz AF, Simão FA, Thomas J, Jiggins FM, Murphy TD, Pritham EJ, Robertson HM, Zdobnov EM, Gibbs RA, et al. Genome sequencing of the phytoseiid predatory mite Metaseiulus occidentalis reveals completely atomised Hox genes and super-dynamic intron evolution. Genome Biology and Evolution. PMID 26951779 DOI: 10.1093/Gbe/Evw048 |
0.582 |
|
| 2016 |
Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, ... ... Zdobnov EM, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507 |
0.44 |
|
| 2016 |
Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, ... ... Zdobnov EM, et al. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications. 7: 10165. PMID 26836814 DOI: 10.1038/Ncomms10165 |
0.504 |
|
| 2015 |
Dousse A, Junier T, Zdobnov EM. CEGA-a catalog of conserved elements from genomic alignments. Nucleic Acids Research. PMID 26527719 DOI: 10.1093/nar/gkv1163 |
0.515 |
|
| 2015 |
Anstead CA, Korhonen PK, Young ND, Hall RS, Jex AR, Murali SC, Hughes DS, Lee SF, Perry T, Stroehlein AJ, Ansell BR, Breugelmans B, Hofmann A, Qu J, Dugan S, ... ... Zdobnov EM, et al. Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions. Nature Communications. 6: 7344. PMID 26108605 DOI: 10.1038/Ncomms8344 |
0.434 |
|
| 2015 |
Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics (Oxford, England). PMID 26059717 DOI: 10.1093/bioinformatics/btv351 |
0.408 |
|
| 2015 |
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, ... ... Zdobnov EM, et al. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science (New York, N.Y.). 348: 1139-43. PMID 25977371 DOI: 10.1126/Science.Aaa4788 |
0.339 |
|
| 2015 |
Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, ... ... Zdobnov EM, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3 |
0.314 |
|
| 2015 |
Zhao C, Escalante LN, Chen H, Benatti TR, Qu J, Chellapilla S, Waterhouse RM, Wheeler D, Andersson MN, Bao R, Batterton M, Behura SK, Blankenburg KP, Caragea D, Carolan JC, ... ... Zdobnov EM, et al. A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor. Current Biology : Cb. 25: 613-20. PMID 25660540 DOI: 10.1016/J.Cub.2014.12.057 |
0.368 |
|
| 2015 |
Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, ... ... Zdobnov EM, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522 |
0.553 |
|
| 2015 |
Kriventseva EV, Tegenfeldt F, Petty TJ, Waterhouse RM, Simão FA, Pozdnyakov IA, Ioannidis P, Zdobnov EM. OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. Nucleic Acids Research. 43: D250-6. PMID 25428351 DOI: 10.1093/Nar/Gku1220 |
0.504 |
|
| 2014 |
Popadin KY, Gutierrez-Arcelus M, Lappalainen T, Buil A, Steinberg J, Nikolaev SI, Lukowski SW, Bazykin GA, Seplyarskiy VB, Ioannidis P, Zdobnov EM, Dermitzakis ET, Antonarakis SE. Gene age predicts the strength of purifying selection acting on gene expression variation in humans. American Journal of Human Genetics. 95: 660-74. PMID 25480033 DOI: 10.1016/j.ajhg.2014.11.003 |
0.334 |
|
| 2014 |
Petty TJ, Cordey S, Padioleau I, Docquier M, Turin L, Preynat-Seauve O, Zdobnov EM, Kaiser L. Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study. Journal of Clinical Microbiology. 52: 3351-61. PMID 25009045 DOI: 10.1128/Jcm.01389-14 |
0.39 |
|
| 2014 |
Stockinger H, Altenhoff AM, Arnold K, Bairoch A, Bastian F, Bergmann S, Bougueleret L, Bucher P, Delorenzi M, Lane L, Le Mercier P, Lisacek F, Michielin O, Palagi PM, Rougemont J, ... ... Zdobnov EM, et al. Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Research. 42: W436-41. PMID 24792157 DOI: 10.1093/Nar/Gku380 |
0.52 |
|
| 2014 |
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, ... ... Zdobnov EM, et al. Finding the missing honey bee genes: lessons learned from a genome upgrade. Bmc Genomics. 15: 86. PMID 24479613 DOI: 10.1186/1471-2164-15-86 |
0.565 |
|
| 2013 |
Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, ... ... Zdobnov E, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050 |
0.477 |
|
| 2013 |
Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, ... ... Zdobnov EM, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113 |
0.509 |
|
| 2013 |
Waterhouse RM, Tegenfeldt F, Li J, Zdobnov EM, Kriventseva EV. OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. Nucleic Acids Research. 41: D358-65. PMID 23180791 DOI: 10.1093/nar/gks1116 |
0.494 |
|
| 2012 |
Cordey S, Petty TJ, Schibler M, Martinez Y, Gerlach D, van Belle S, Turin L, Zdobnov E, Kaiser L, Tapparel C. Identification of site-specific adaptations conferring increased neural cell tropism during human enterovirus 71 infection. Plos Pathogens. 8: e1002826. PMID 22910880 DOI: 10.1371/Journal.Ppat.1002826 |
0.388 |
|
| 2011 |
Li J, Waterhouse RM, Zdobnov EM. A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits. Bmc Evolutionary Biology. 11: 337. PMID 22098672 DOI: 10.1186/1471-2148-11-337 |
0.416 |
|
| 2011 |
Tapparel C, Cordey S, Junier T, Farinelli L, Van Belle S, Soccal PM, Aubert JD, Zdobnov E, Kaiser L. Rhinovirus genome variation during chronic upper and lower respiratory tract infections. Plos One. 6: e21163. PMID 21713005 DOI: 10.1371/Journal.Pone.0021163 |
0.354 |
|
| 2011 |
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, ... ... Zdobnov EM, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/Science.1197761 |
0.745 |
|
| 2011 |
Waterhouse RM, Zdobnov EM, Kriventseva EV. Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi. Genome Biology and Evolution. 3: 75-86. PMID 21148284 DOI: 10.1093/gbe/evq083 |
0.513 |
|
| 2011 |
Waterhouse RM, Zdobnov EM, Tegenfeldt F, Li J, Kriventseva EV. OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. Nucleic Acids Research. 39: D283-8. PMID 20972218 DOI: 10.1093/nar/gkq930 |
0.476 |
|
| 2010 |
Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, ... ... Zdobnov EM, et al. Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science (New York, N.Y.). 330: 86-8. PMID 20929810 DOI: 10.1126/Science.1191864 |
0.442 |
|
| 2010 |
Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, ... ... Zdobnov EM, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/Pnas.1003379107 |
0.494 |
|
| 2010 |
Cordey S, Junier T, Gerlach D, Gobbini F, Farinelli L, Zdobnov EM, Winther B, Tapparel C, Kaiser L. Rhinovirus genome evolution during experimental human infection. Plos One. 5: e10588. PMID 20485673 DOI: 10.1371/Journal.Pone.0010588 |
0.393 |
|
| 2010 |
Kim J, Cunningham R, James B, Wyder S, Gibson JD, Niehuis O, Zdobnov EM, Robertson HM, Robinson GE, Werren JH, Sinha S. Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances. Plos Computational Biology. 6: e1000652. PMID 20126523 DOI: 10.1371/Journal.Pcbi.1000652 |
0.461 |
|
| 2010 |
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, ... ... Zdobnov EM, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028 |
0.74 |
|
| 2009 |
Lemay DG, Lynn DJ, Martin WF, Neville MC, Casey TM, Rincon G, Kriventseva EV, Barris WC, Hinrichs AS, Molenaar AJ, Pollard KS, Maqbool NJ, Singh K, Murney R, Zdobnov EM, et al. The bovine lactation genome: insights into the evolution of mammalian milk. Genome Biology. 10: R43. PMID 19393040 DOI: 10.1186/Gb-2009-10-4-R43 |
0.564 |
|
| 2009 |
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Zdobnov EM, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588 |
0.583 |
|
| 2009 |
Matsui T, Yamamoto T, Wyder S, Zdobnov EM, Kadowaki T. Expression profiles of urbilaterian genes uniquely shared between honey bee and vertebrates. Bmc Genomics. 10: 17. PMID 19138430 DOI: 10.1186/1471-2164-10-17 |
0.414 |
|
| 2009 |
Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM. miROrtho: computational survey of microRNA genes. Nucleic Acids Research. 37: D111-7. PMID 18927110 DOI: 10.1093/Nar/Gkn707 |
0.473 |
|
| 2009 |
Kafatos F, Waterhouse R, Zdobnov E, Christophides G. Comparative genomics of insect immunity Insect Infection and Immunity: Evolution, Ecology, and Mechanisms. DOI: 10.1093/acprof:oso/9780199551354.003.0006 |
0.359 |
|
| 2008 |
Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... ... Zdobnov EM, ... ... Zdobnov EM, ... ... Zdobnov EM, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784 |
0.761 |
|
| 2008 |
Waterhouse RM, Wyder S, Zdobnov EM. The Aedes aegypti genome: a comparative perspective. Insect Molecular Biology. 17: 1-8. PMID 18237279 DOI: 10.1111/J.1365-2583.2008.00772.X |
0.64 |
|
| 2008 |
Kriventseva EV, Rahman N, Espinosa O, Zdobnov EM. OrthoDB: the hierarchical catalog of eukaryotic orthologs. Nucleic Acids Research. 36: D271-5. PMID 17947323 DOI: 10.1093/nar/gkm845 |
0.473 |
|
| 2007 |
Wyder S, Kriventseva EV, Schröder R, Kadowaki T, Zdobnov EM. Quantification of ortholog losses in insects and vertebrates. Genome Biology. 8: R242. PMID 18021399 DOI: 10.1186/gb-2007-8-11-r242 |
0.489 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Zdobnov E, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.612 |
|
| 2007 |
Tapparel C, Junier T, Gerlach D, Cordey S, Van Belle S, Perrin L, Zdobnov EM, Kaiser L. New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features. Bmc Genomics. 8: 224. PMID 17623054 DOI: 10.1186/1471-2164-8-224 |
0.456 |
|
| 2007 |
Koutsos AC, Blass C, Meister S, Schmidt S, MacCallum RM, Soares MB, Collins FH, Benes V, Zdobnov E, Kafatos FC, Christophides GK. Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 104: 11304-9. PMID 17563388 DOI: 10.1073/Pnas.0703988104 |
0.487 |
|
| 2007 |
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science (New York, N.Y.). 316: 1718-23. PMID 17510324 DOI: 10.1126/Science.1138878 |
0.541 |
|
| 2007 |
Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Emmert D, Hammond M, Hill CA, Kennedy RC, Lobo NF, ... ... Zdobnov EM, et al. VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Research. 35: D503-5. PMID 17145709 DOI: 10.1093/Nar/Gkl960 |
0.302 |
|
| 2007 |
Zdobnov EM, Bork P. Quantification of insect genome divergence. Trends in Genetics : Tig. 23: 16-20. PMID 17097187 DOI: 10.1016/J.Tig.2006.10.004 |
0.665 |
|
| 2005 |
Zdobnov EM, von Mering C, Letunic I, Bork P. Consistency of genome-based methods in measuring Metazoan evolution. Febs Letters. 579: 3355-61. PMID 15943981 DOI: 10.1016/J.Febslet.2005.04.006 |
0.779 |
|
| 2005 |
Kriventseva EV, Koutsos AC, Blass C, Kafatos FC, Christophides GK, Zdobnov EM. AnoEST: toward A. gambiae functional genomics. Genome Research. 15: 893-9. PMID 15899967 DOI: 10.1101/gr.3756405 |
0.462 |
|
| 2005 |
Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P. Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. Nucleic Acids Research. 33: 946-54. PMID 15716312 DOI: 10.1093/Nar/Gki236 |
0.797 |
|
| 2005 |
Bourque G, Zdobnov EM, Bork P, Pevzner PA, Tesler G. Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Research. 15: 98-110. PMID 15590940 DOI: 10.1101/Gr.3002305 |
0.655 |
|
| 2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Zdobnov E, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.809 |
|
| 2003 |
von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P. Genome evolution reveals biochemical networks and functional modules. Proceedings of the National Academy of Sciences of the United States of America. 100: 15428-33. PMID 14673105 DOI: 10.1073/Pnas.2136809100 |
0.804 |
|
| 2003 |
Torrents D, Suyama M, Zdobnov E, Bork P. A genome-wide survey of human pseudogenes. Genome Research. 13: 2559-67. PMID 14656963 DOI: 10.1101/Gr.1455503 |
0.729 |
|
| 2003 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, ... ... Zdobnov EM, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046 |
0.728 |
|
| 2002 |
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Zdobnov EM, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262 |
0.81 |
|
| 2002 |
Christophides GK, Zdobnov E, Barillas-Mury C, Birney E, Blandin S, Blass C, Brey PT, Collins FH, Danielli A, Dimopoulos G, Hetru C, Hoa NT, Hoffmann JA, Kanzok SM, Letunic I, et al. Immunity-related genes and gene families in Anopheles gambiae. Science (New York, N.Y.). 298: 159-65. PMID 12364793 DOI: 10.1126/Science.1077136 |
0.749 |
|
| 2002 |
Zdobnov EM, von Mering C, Letunic I, Torrents D, Suyama M, Copley RR, Christophides GK, Thomasova D, Holt RA, Subramanian GM, Mueller HM, Dimopoulos G, Law JH, Wells MA, Birney E, et al. Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (New York, N.Y.). 298: 149-59. PMID 12364792 DOI: 10.1126/Science.1077061 |
0.793 |
|
| 2002 |
Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, ... ... Zdobnov EM, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181 |
0.765 |
|
| 2002 |
Thomasova D, Ton LQ, Copley RR, Zdobnov EM, Wang X, Hong YS, Sim C, Bork P, Kafatos FC, Collins FH. Comparative genomic analysis in the region of a major Plasmodium-refractoriness locus of Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 8179-84. PMID 12060762 DOI: 10.1073/Pnas.082235599 |
0.744 |
|
| 2002 |
Kanapin A, Apweiler R, Biswas M, Fleischmann W, Karavidopoulou Y, Kersey P, Kriventseva EV, Mittard V, Mulder N, Oinn T, Phan I, Servant F, Zdobnov E. Interactive InterPro-based comparisons of proteins in whole genomes. Bioinformatics (Oxford, England). 18: 374-5. PMID 11847096 DOI: 10.1093/Bioinformatics/18.2.374 |
0.384 |
|
| 2001 |
Apweiler R, Biswas M, Fleischmann W, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva EV, Mittard V, Mulder N, Phan I, Zdobnov E. Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. Nucleic Acids Research. 29: 44-8. PMID 11125045 DOI: 10.1093/Nar/29.1.44 |
0.452 |
|
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