Miguel A. Andrade-Navarro - Publications

Affiliations: 
2003-2007 Ottawa Hospital Research Institute 
 2007-2014 Max Delbrück Center for Molecular Medicine, Berlin, Berlin, Germany 
 2014- Faculty of Biology Johannes Gutenberg University, Germany 
Website:
http://cbdm.uni-mainz.de/andrade/

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Dallago C, Goldberg T, Andrade-Navarro MA, Alanis-Lobato G, Rost B. Visualizing Human Protein-Protein Interactions and Subcellular Localizations on Cell Images Through CellMap. Current Protocols in Bioinformatics. 69: e97. PMID 32150354 DOI: 10.1002/Cpbi.97  0.435
2019 El Amrani K, Alanis-Lobato G, Mah N, Kurtz A, Andrade-Navarro MA. Detection of condition-specific marker genes from RNA-seq data with MGFR. Peerj. 7: e6970. PMID 31179178 DOI: 10.7717/peerj.6970  0.314
2017 Dallago C, Goldberg T, Andrade-Navarro MA, Alanis-Lobato G, Rost B. CellMap visualizes protein-protein interactions and subcellular localization. F1000research. 6: 1824. PMID 29497493 DOI: 10.12688/F1000Research.12707.2  0.444
2017 Ibn-Salem J, Muro EM, Andrade-Navarro MA. Co-regulation of paralog genes in the three-dimensional chromatin architecture. Nucleic Acids Research. 45: 81-91. PMID 27634932 DOI: 10.1093/nar/gkw813  0.319
2015 El Amrani K, Stachelscheid H, Lekschas F, Kurtz A, Andrade-Navarro MA. MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data. Bmc Genomics. 16: 645. PMID 26314578 DOI: 10.1186/s12864-015-1785-9  0.337
2015 Andrade-Navarro M, Perez-Iratxeta C. Text mining of biomedical literature: doing well, but we could be doing better. Methods (San Diego, Calif.). 74: 1-2. PMID 25703199 DOI: 10.1016/j.ymeth.2015.01.014  0.591
2015 Fontaine JF, Priller J, Spruth E, Perez-Iratxeta C, Andrade-Navarro MA. Assessment of curated phenotype mining in neuropsychiatric disorder literature. Methods (San Diego, Calif.). 74: 90-6. PMID 25484337 DOI: 10.1016/j.ymeth.2014.11.022  0.624
2013 Fournier D, Palidwor GA, Shcherbinin S, Szengel A, Schaefer MH, Perez-Iratxeta C, Andrade-Navarro MA. Functional and genomic analyses of alpha-solenoid proteins. Plos One. 8: e79894. PMID 24278209 DOI: 10.1371/journal.pone.0079894  0.606
2013 Andrade-Navarro MA, Kanji F, Palii CG, Brand M, Atkins H, Perez-Iratxeta C. A method for cell type marker discovery by high-throughput gene expression analysis of mixed cell populations. Bmc Biotechnology. 13: 80. PMID 24090206 DOI: 10.1186/1472-6750-13-80  0.655
2013 Schaefer MH, Lopes TJ, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro MA. Adding protein context to the human protein-protein interaction network to reveal meaningful interactions. Plos Computational Biology. 9: e1002860. PMID 23300433 DOI: 10.1371/Journal.Pcbi.1002860  0.661
2012 Andrade-Navarro MA, Palidwor GA, Perez-Iratxeta C. Peer2ref: a peer-reviewer finding web tool that uses author disambiguation. Biodata Mining. 5: 14. PMID 22958760 DOI: 10.1186/1756-0381-5-14  0.607
2012 McNeill B, Perez-Iratxeta C, Mazerolle C, Furimsky M, Mishina Y, Andrade-Navarro MA, Wallace VA. Comparative genomics identification of a novel set of temporally regulated hedgehog target genes in the retina. Molecular and Cellular Neurosciences. 49: 333-40. PMID 22281533 DOI: 10.1016/J.Mcn.2011.12.008  0.652
2012 Louis-Jeune C, Andrade-Navarro MA, Perez-Iratxeta C. Prediction of protein secondary structure from circular dichroism using theoretically derived spectra. Proteins. 80: 374-81. PMID 22095872 DOI: 10.1002/prot.23188  0.612
2011 Donnard E, Barbosa-Silva A, Guedes RL, Fernandes GR, Velloso H, Kohn MJ, Andrade-Navarro MA, Ortega JM. Preimplantation development regulatory pathway construction through a text-mining approach. Bmc Genomics. 12: S3. PMID 22369103 DOI: 10.1186/1471-2164-12-S4-S3  0.533
2011 Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, ... ... Andrade-Navarro MA, et al. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. Bmc Bioinformatics. 12: S3. PMID 22151929 DOI: 10.1186/1471-2105-12-S8-S3  0.42
2010 Mah N, Perez-Iratxeta C, Andrade-Navarro MA. Outer membrane pore protein prediction in mycobacteria using genomic comparison. Microbiology (Reading, England). 156: 2506-15. PMID 20466765 DOI: 10.1099/mic.0.040089-0  0.624
2010 Barbosa-Silva A, Soldatos TG, Magalhães IL, Pavlopoulos GA, Fontaine JF, Andrade-Navarro MA, Schneider R, Ortega JM. LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships. Bmc Bioinformatics. 11: 70. PMID 20122157 DOI: 10.1186/1471-2105-11-70  0.505
2009 Tiffin N, Andrade-Navarro MA, Perez-Iratxeta C. Linking genes to diseases: it's all in the data. Genome Medicine. 1: 77. PMID 19678910 DOI: 10.1186/gm77  0.694
2009 Sandie R, Palidwor GA, Huska MR, Porter CJ, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. Bmc Research Notes. 2: 39. PMID 19284540 DOI: 10.1186/1756-0500-2-39  0.682
2008 Tremblay K, Lemire M, Potvin C, Tremblay A, Hunninghake GM, Raby BA, Hudson TJ, Perez-Iratxeta C, Andrade-Navarro MA, Laprise C. Genes to diseases (G2D) computational method to identify asthma candidate genes. Plos One. 3: e2907. PMID 18682798 DOI: 10.1371/Journal.Pone.0002907  0.65
2008 Tiffin N, Okpechi I, Perez-Iratxeta C, Andrade-Navarro MA, Ramesar R. Prioritization of candidate disease genes for metabolic syndrome by computational analysis of its defining phenotypes. Physiological Genomics. 35: 55-64. PMID 18612082 DOI: 10.1152/physiolgenomics.90247.2008  0.663
2008 Perez-Iratxeta C, Andrade-Navarro MA. K2D2: estimation of protein secondary structure from circular dichroism spectra. Bmc Structural Biology. 8: 25. PMID 18477405 DOI: 10.1186/1472-6807-8-25  0.612
2008 Krzyzanowski PM, Andrade-Navarro MA. Identification of novel stem cell markers using gap analysis of gene expression data. Genome Biology. 8: R193. PMID 17875203 DOI: 10.1186/gb-2007-8-9-r193  0.316
2007 Porter CJ, Palidwor GA, Sandie R, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. StemBase: a resource for the analysis of stem cell gene expression data. Methods in Molecular Biology (Clifton, N.J.). 407: 137-48. PMID 18453254 DOI: 10.1007/978-1-59745-536-7_11  0.671
2007 Perez-Iratxeta C, Palidwor G, Andrade-Navarro MA. Towards completion of the Earth's proteome. Embo Reports. 8: 1135-41. PMID 18059312 DOI: 10.1038/Sj.Embor.7401117  0.623
2007 Grenier G, Scimè A, Le Grand F, Asakura A, Perez-Iratxeta C, Andrade-Navarro MA, Labosky PA, Rudnicki MA. Resident endothelial precursors in muscle, adipose, and dermis contribute to postnatal vasculogenesis. Stem Cells (Dayton, Ohio). 25: 3101-10. PMID 17823241 DOI: 10.1634/Stemcells.2006-0795  0.592
2007 Campbell PA, Perez-Iratxeta C, Andrade-Navarro MA, Rudnicki MA. Oct4 targets regulatory nodes to modulate stem cell function. Plos One. 2: e553. PMID 17579724 DOI: 10.1371/Journal.Pone.0000553  0.661
2007 Perez-Iratxeta C, Bork P, Andrade-Navarro MA. Update of the G2D tool for prioritization of gene candidates to inherited diseases. Nucleic Acids Research. 35: W212-6. PMID 17478516 DOI: 10.1093/nar/gkm223  0.715
2007 Hailesellasse Sene K, Porter CJ, Palidwor G, Perez-Iratxeta C, Muro EM, Campbell PA, Rudnicki MA, Andrade-Navarro MA. Gene function in early mouse embryonic stem cell differentiation. Bmc Genomics. 8: 85. PMID 17394647 DOI: 10.1186/1471-2164-8-85  0.69
2007 Perez-Iratxeta C, Andrade-Navarro MA, Wren JD. Evolving research trends in bioinformatics. Briefings in Bioinformatics. 8: 88-95. PMID 17077138 DOI: 10.1093/Bib/Bbl035  0.621
2006 Tiffin N, Adie E, Turner F, Brunner HG, van Driel MA, Oti M, Lopez-Bigas N, Ouzounis C, Perez-Iratxeta C, Andrade-Navarro MA, Adeyemo A, Patti ME, Semple CA, Hide W. Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes. Nucleic Acids Research. 34: 3067-81. PMID 16757574 DOI: 10.1093/Nar/Gkl381  0.678
2006 Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Amplification of the Gene Ontology annotation of Affymetrix probe sets. Bmc Bioinformatics. 7: 159. PMID 16549014 DOI: 10.1186/1471-2105-7-159  0.666
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