Berend Snel - Publications

Biology Utrecht University, Utrecht, Netherlands 

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 von der Dunk SHA, Hogeweg P, Snel B. Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis. Plos Computational Biology. 20: e1011860. PMID 38335232 DOI: 10.1371/journal.pcbi.1011860  0.545
2023 von der Dunk SHA, Hogeweg P, Snel B. Obligate endosymbiosis enables genome expansion during eukaryogenesis. Communications Biology. 6: 777. PMID 37491455 DOI: 10.1038/s42003-023-05153-x  0.604
2023 Broeils LA, Ruiz-Orera J, Snel B, Hubner N, van Heesch S. Evolution and implications of de novo genes in humans. Nature Ecology & Evolution. PMID 36928843 DOI: 10.1038/s41559-023-02014-y  0.394
2023 Vosseberg J, Stolker D, von der Dunk SHA, Snel B. Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome. Molecular Biology and Evolution. 40. PMID 36631250 DOI: 10.1093/molbev/msad011  0.31
2022 Vosseberg J, Schinkel M, Gremmen S, Snel B. The spread of the first introns in proto-eukaryotic paralogs. Communications Biology. 5: 476. PMID 35589959 DOI: 10.1038/s42003-022-03426-5  0.381
2022 von der Dunk SHA, Snel B, Hogeweg P. Evolution of Complex Regulation for Cell-Cycle Control. Genome Biology and Evolution. 14. PMID 35482058 DOI: 10.1093/gbe/evac056  0.629
2022 Deutekom ES, van Dam TJP, Snel B. Phylogenetic profiling in eukaryotes: The effect of species, orthologous group, and interactome selection on protein interaction prediction. Plos One. 17: e0251833. PMID 35421089 DOI: 10.1371/journal.pone.0251833  0.427
2020 Vosseberg J, van Hooff JJE, Marcet-Houben M, van Vlimmeren A, van Wijk LM, Gabaldón T, Snel B. Timing the origin of eukaryotic cellular complexity with ancient duplications. Nature Ecology & Evolution. PMID 33106602 DOI: 10.1038/s41559-020-01320-z  0.562
2020 Deutekom ES, Snel B, van Dam TJP. Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes. Briefings in Bioinformatics. PMID 32935832 DOI: 10.1093/Bib/Bbaa206  0.515
2020 A von der Dunk SH, Snel B. Recurrent sequence evolution after independent gene duplication. Bmc Evolutionary Biology. 20: 98. PMID 32770961 DOI: 10.1186/S12862-020-01660-1  0.468
2020 Kops GJPL, Snel B, Tromer EC. Evolutionary Dynamics of the Spindle Assembly Checkpoint in Eukaryotes. Current Biology : Cb. 30: R589-R602. PMID 32428500 DOI: 10.1016/J.Cub.2020.02.021  0.372
2019 Deutekom ES, Vosseberg J, van Dam TJP, Snel B. Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences. Plos Computational Biology. 15: e1007301. PMID 31461468 DOI: 10.1371/Journal.Pcbi.1007301  0.534
2019 Tromer EC, van Hooff JJE, Kops GJPL, Snel B. Mosaic origin of the eukaryotic kinetochore. Proceedings of the National Academy of Sciences of the United States of America. PMID 31127038 DOI: 10.1073/Pnas.1821945116  0.399
2019 Antonova SV, Boeren J, Timmers HTM, Snel B. Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID. Genes & Development. PMID 31123066 DOI: 10.1101/Gad.300475.117  0.322
2019 van Hooff JJE, Tromer E, van Dam TJP, Kops GJPL, Snel B. Inferring the Evolutionary History of Your Favorite Protein: A Guide for Molecular Biologists. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 41: e1900006. PMID 31026339 DOI: 10.1002/Bies.201900006  0.449
2018 van der Horst S, Snel B, Hanson J, Smeekens S. Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in . Rna (New York, N.Y.). PMID 30567971 DOI: 10.1261/Rna.067983.118  0.426
2017 Vosseberg J, Snel B. Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery. Biology Direct. 12: 30. PMID 29191215 DOI: 10.1186/S13062-017-0201-6  0.364
2017 van Hooff JJ, Tromer E, van Wijk LM, Snel B, Kops GJ. Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics. Embo Reports. PMID 28642229 DOI: 10.15252/Embr.201744102  0.433
2016 Tromer E, Bade D, Snel B, Kops GJ. Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint. Open Biology. 6. PMID 28003474 DOI: 10.1098/Rsob.160315  0.537
2016 Bai B, Peviani A, van der Horst S, Gamm M, Snel B, Bentsink L, Hanson J. Extensive translational regulation during seed germination revealed by polysomal profiling. The New Phytologist. PMID 27935038 DOI: 10.1111/Nph.14355  0.33
2016 Santuari L, Sanchez-Perez G, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novák O, ... ... Snel B, et al. The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis roots. The Plant Cell. PMID 27920338 DOI: 10.1105/Tpc.16.00656  0.333
2015 Sameith K, Amini S, Groot Koerkamp MJ, van Leenen D, Brok M, Brabers N, Lijnzaad P, van Hooff SR, Benschop JJ, Lenstra TL, Apweiler E, van Wageningen S, Snel B, Holstege FC, Kemmeren P. A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions. Bmc Biology. 13: 112. PMID 26700642 DOI: 10.1186/S12915-015-0222-5  0.379
2015 Tromer E, Snel B, Kops GJ. Widespread Recurrent Patterns of Rapid Repeat Evolution in the Kinetochore Scaffold KNL1. Genome Biology and Evolution. 7: 2383-93. PMID 26254484 DOI: 10.1093/Gbe/Evv140  0.369
2015 Peng M, Aye TT, Snel B, van Breukelen B, Scholten A, Heck AJ. Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution. Journal of Proteome Research. PMID 26066639 DOI: 10.1021/Acs.Jproteome.5B00370  0.323
2015 Koster MJ, Snel B, Timmers HT. Genesis of Chromatin and Transcription Dynamics in the Origin of Species. Cell. 161: 724-736. PMID 25957681 DOI: 10.1016/J.Cell.2015.04.033  0.308
2015 Berke L, Snel B. The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history. Bmc Evolutionary Biology. 15: 44. PMID 25881027 DOI: 10.1186/S12862-015-0319-Z  0.306
2014 Kemmeren P, Sameith K, van de Pasch LA, Benschop JJ, Lenstra TL, Margaritis T, O'Duibhir E, Apweiler E, van Wageningen S, Ko CW, van Heesch S, Kashani MM, Ampatziadis-Michailidis G, Brok MO, Brabers NA, ... ... Snel B, et al. Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors. Cell. 157: 740-52. PMID 24766815 DOI: 10.1016/J.Cell.2014.02.054  0.472
2014 van Hooff JJ, Snel B, Seidl MF. Small homologous blocks in phytophthora genomes do not point to an ancient whole-genome duplication. Genome Biology and Evolution. 6: 1079-85. PMID 24760277 DOI: 10.1093/Gbe/Evu081  0.503
2014 Berke L, Snel B. The histone modification H3K27me3 is retained after gene duplication and correlates with conserved noncoding sequences in Arabidopsis. Genome Biology and Evolution. 6: 572-9. PMID 24567304 DOI: 10.1093/Gbe/Evu040  0.514
2013 Schneider A, Seidl MF, Snel B. Shared protein complex subunits contribute to explaining disrupted co-occurrence. Plos Computational Biology. 9: e1003124. PMID 23874172 DOI: 10.1371/Journal.Pcbi.1003124  0.573
2013 Seidl MF, Schneider A, Govers F, Snel B. A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology. Bmc Genomics. 14: 483. PMID 23865555 DOI: 10.1186/1471-2164-14-483  0.533
2013 Jiang RH, de Bruijn I, Haas BJ, Belmonte R, Löbach L, Christie J, van den Ackerveken G, Bottin A, Bulone V, Díaz-Moreno SM, Dumas B, Fan L, Gaulin E, Govers F, Grenville-Briggs LJ, ... ... Snel B, et al. Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. Plos Genetics. 9: e1003272. PMID 23785293 DOI: 10.1371/Journal.Pgen.1003272  0.463
2013 Wind JJ, Peviani A, Snel B, Hanson J, Smeekens SC. ABI4: versatile activator and repressor. Trends in Plant Science. 18: 125-32. PMID 23182343 DOI: 10.1016/J.Tplants.2012.10.004  0.318
2012 Seidl MF, Wang RP, Van den Ackerveken G, Govers F, Snel B. Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestans. Plos One. 7: e51295. PMID 23251489 DOI: 10.1371/Journal.Pone.0051295  0.475
2012 Berke L, Sanchez-Perez GF, Snel B. Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis. Genome Biology. 13: R94. PMID 23034476 DOI: 10.1186/Gb-2012-13-10-R94  0.469
2012 Vleugel M, Hoogendoorn E, Snel B, Kops GJ. Evolution and function of the mitotic checkpoint. Developmental Cell. 23: 239-50. PMID 22898774 DOI: 10.1016/J.Devcel.2012.06.013  0.318
2012 Fokkens L, Hogeweg P, Snel B. Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age. Bmc Evolutionary Biology. 12: 99. PMID 22732003 DOI: 10.1186/1471-2148-12-99  0.63
2012 Suijkerbuijk SJ, van Dam TJ, Karagöz GE, von Castelmur E, Hubner NC, Duarte AM, Vleugel M, Perrakis A, Rüdiger SG, Snel B, Kops GJ. The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase. Developmental Cell. 22: 1321-9. PMID 22698286 DOI: 10.1016/J.Devcel.2012.03.009  0.326
2012 Stassen JH, Seidl MF, Vergeer PW, Nijman IJ, Snel B, Cuppen E, Van den Ackerveken G. Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing. Molecular Plant Pathology. 13: 719-31. PMID 22293108 DOI: 10.1111/J.1364-3703.2011.00780.X  0.441
2012 Seidl MF, Van den Ackerveken G, Govers F, Snel B. Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene families. Genome Biology and Evolution. 4: 199-211. PMID 22230142 DOI: 10.1093/Gbe/Evs003  0.548
2012 Altelaar AF, Navarro D, Boekhorst J, van Breukelen B, Snel B, Mohammed S, Heck AJ. Database independent proteomics analysis of the ostrich and human proteome. Proceedings of the National Academy of Sciences of the United States of America. 109: 407-12. PMID 22198768 DOI: 10.1073/Pnas.1108399108  0.369
2011 van Dam TJ, Zwartkruis FJ, Bos JL, Snel B. Evolution of the TOR pathway. Journal of Molecular Evolution. 73: 209-20. PMID 22057117 DOI: 10.1007/S00239-011-9469-9  0.322
2011 Boekhorst J, Boersema PJ, Tops BB, van Breukelen B, Heck AJ, Snel B. Evaluating experimental bias and completeness in comparative phosphoproteomics analysis. Plos One. 6: e23276. PMID 21853102 DOI: 10.1371/Journal.Pone.0023276  0.332
2011 Prasad K, Grigg SP, Barkoulas M, Yadav RK, Sanchez-Perez GF, Pinon V, Blilou I, Hofhuis H, Dhonukshe P, Galinha C, Mähönen AP, Muller WH, Raman S, Verkleij AJ, Snel B, et al. Arabidopsis PLETHORA transcription factors control phyllotaxis. Current Biology : Cb. 21: 1123-8. PMID 21700457 DOI: 10.1016/J.Cub.2011.05.009  0.306
2011 van Dam TJ, Bos JL, Snel B. Evolution of the Ras-like small GTPases and their regulators. Small Gtpases. 2: 4-16. PMID 21686276 DOI: 10.4161/Sgtp.2.1.15113  0.327
2011 Seidl MF, Van den Ackerveken G, Govers F, Snel B. A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization. Plant Physiology. 155: 628-44. PMID 21119047 DOI: 10.1104/Pp.110.167841  0.362
2011 Dutilh BE, Huynen MA, Bruno WJ, Snel B. The consistent signal in genome trees revealed by reducing the impact of noise F1000research. 2. DOI: 10.7490/F1000Research.826.1  0.673
2011 Dutilh BE, Noort Vv, Heijden RTvd, Huynen MA, Snel B. A comprehensive comparison of phylogenomics and orthology methods applied to the Fungi F1000research. 2. DOI: 10.7490/F1000Research.813.1  0.636
2010 van Wageningen S, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, de Castro IJ, van Leenen D, Groot Koerkamp MJ, Ko CW, Miles AJ, Brabers N, Brok MO, Lenstra TL, Fiedler D, Fokkens L, ... ... Snel B, et al. Functional overlap and regulatory links shape genetic interactions between signaling pathways. Cell. 143: 991-1004. PMID 21145464 DOI: 10.1016/J.Cell.2010.11.021  0.384
2010 Bennett T, van den Toorn A, Sanchez-Perez GF, Campilho A, Willemsen V, Snel B, Scheres B. SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis. The Plant Cell. 22: 640-54. PMID 20197506 DOI: 10.1105/Tpc.109.072272  0.347
2010 Fokkens L, Botelho SM, Boekhorst J, Snel B. Enrichment of homologs in insignificant BLAST hits by co-complex network alignment. Bmc Bioinformatics. 11: 86. PMID 20152020 DOI: 10.1186/1471-2105-11-86  0.472
2009 Fokkens L, Snel B. Cohesive versus flexible evolution of functional modules in eukaryotes. Plos Computational Biology. 5: e1000276. PMID 19180181 DOI: 10.1371/Journal.Pcbi.1000276  0.408
2008 Szklarczyk R, Huynen MA, Snel B. Complex fate of paralogs. Bmc Evolutionary Biology. 8: 337. PMID 19094234 DOI: 10.1186/1471-2148-8-337  0.723
2008 Boekhorst J, van Breukelen B, Heck A, Snel B. Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes. Genome Biology. 9: R144. PMID 18828897 DOI: 10.1186/Gb-2008-9-10-R144  0.399
2008 van Dam TJ, Snel B. Protein complex evolution does not involve extensive network rewiring. Plos Computational Biology. 4: e1000132. PMID 18711636 DOI: 10.1371/Journal.Pcbi.1000132  0.439
2008 Dutilh BE, Snel B, Ettema TJ, Huynen MA. Signature genes as a phylogenomic tool. Molecular Biology and Evolution. 25: 1659-67. PMID 18492663 DOI: 10.1093/Molbev/Msn115  0.774
2008 Cordero OX, Snel B, Hogeweg P. Coevolution of gene families in prokaryotes. Genome Research. 18: 462-8. PMID 18230804 DOI: 10.1101/Gr.6815508  0.654
2007 Boekhorst J, Snel B. Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties. Bmc Bioinformatics. 8: 356. PMID 17888146 DOI: 10.1186/1471-2105-8-356  0.566
2007 van Noort V, Snel B, Huynen MA. Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions. Genome Biology. 8: R197. PMID 17880677 DOI: 10.1186/Gb-2007-8-9-R197  0.788
2007 van der Heijden RT, Snel B, van Noort V, Huynen MA. Orthology prediction at scalable resolution by phylogenetic tree analysis. Bmc Bioinformatics. 8: 83. PMID 17346331 DOI: 10.1186/1471-2105-8-83  0.807
2007 Dutilh BE, van Noort V, van der Heijden RT, Boekhout T, Snel B, Huynen MA. Assessment of phylogenomic and orthology approaches for phylogenetic inference. Bioinformatics (Oxford, England). 23: 815-24. PMID 17237036 DOI: 10.1093/Bioinformatics/Btm015  0.825
2007 von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Krüger B, Snel B, Bork P. STRING 7--recent developments in the integration and prediction of protein interactions. Nucleic Acids Research. 35: D358-62. PMID 17098935 DOI: 10.1093/Nar/Gkl825  0.814
2006 Kuramae EE, Robert V, Snel B, Weiss M, Boekhout T. Phylogenomics reveal a robust fungal tree of life. Fems Yeast Research. 6: 1213-20. PMID 17156018 DOI: 10.1111/J.1567-1364.2006.00119.X  0.513
2006 Kuramae EE, Robert V, Snel B, Boekhout T. Conflicting phylogenetic position of Schizosaccharomyces pombe. Genomics. 88: 387-93. PMID 16904286 DOI: 10.1016/J.Ygeno.2006.07.001  0.433
2006 Oti M, Snel B, Huynen MA, Brunner HG. Predicting disease genes using protein-protein interactions. Journal of Medical Genetics. 43: 691-8. PMID 16611749 DOI: 10.1136/Jmg.2006.041376  0.729
2006 Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, ... ... Snel B, et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature. 440: 790-4. PMID 16598256 DOI: 10.1038/Nature04647  0.727
2006 Gabaldón T, Snel B, van Zimmeren F, Hemrika W, Tabak H, Huynen MA. Origin and evolution of the peroxisomal proteome. Biology Direct. 1: 8. PMID 16556314 DOI: 10.1186/1745-6150-1-8  0.761
2006 Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P. Toward automatic reconstruction of a highly resolved tree of life. Science (New York, N.Y.). 311: 1283-7. PMID 16513982 DOI: 10.1126/Science.1123061  0.793
2006 Dutilh BE, Huynen MA, Snel B. A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation. Bmc Genomics. 7: 10. PMID 16423292 DOI: 10.1186/1471-2164-7-10  0.733
2005 Notebaart RA, Huynen MA, Teusink B, Siezen RJ, Snel B. Correlation between sequence conservation and the genomic context after gene duplication. Nucleic Acids Research. 33: 6164-71. PMID 16257980 DOI: 10.1093/Nar/Gki913  0.792
2005 Snel B, Huynen MA, Dutilh BE. Genome trees and the nature of genome evolution. Annual Review of Microbiology. 59: 191-209. PMID 16153168 DOI: 10.1146/Annurev.Micro.59.030804.121233  0.765
2005 Huynen MA, Gabaldón T, Snel B. Variation and evolution of biomolecular systems: searching for functional relevance. Febs Letters. 579: 1839-45. PMID 15763561 DOI: 10.1016/J.Febslet.2005.02.004  0.772
2005 Huynen MA, Spronk CA, Gabaldón T, Snel B. Combining data from genomes, Y2H and 3D structure indicates that BolA is a reductase interacting with a glutaredoxin. Febs Letters. 579: 591-6. PMID 15670813 DOI: 10.1016/J.Febslet.2004.11.111  0.787
2005 von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, Jouffre N, Huynen MA, Bork P. STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Research. 33: D433-7. PMID 15608232 DOI: 10.1093/Nar/Gki005  0.79
2004 Snel B, van Noort V, Huynen MA. Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes. Nucleic Acids Research. 32: 4725-31. PMID 15353560 DOI: 10.1093/Nar/Gkh815  0.831
2004 Huynen MA, Snel B, van Noort V. Comparative genomics for reliable protein-function prediction from genomic data. Trends in Genetics : Tig. 20: 340-4. PMID 15262404 DOI: 10.1016/J.Tig.2004.06.003  0.816
2004 Dutilh BE, Huynen MA, Bruno WJ, Snel B. The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise. Journal of Molecular Evolution. 58: 527-39. PMID 15170256 DOI: 10.1007/S00239-003-2575-6  0.751
2004 Snel B, Huynen MA. Quantifying modularity in the evolution of biomolecular systems. Genome Research. 14: 391-7. PMID 14993205 DOI: 10.1101/Gr.1969504  0.718
2004 van Noort V, Snel B, Huynen MA. The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model. Embo Reports. 5: 280-4. PMID 14968131 DOI: 10.1038/Sj.Embor.7400090  0.78
2003 Morett E, Korbel JO, Rajan E, Saab-Rincon G, Olvera L, Olvera M, Schmidt S, Snel B, Bork P. Systematic discovery of analogous enzymes in thiamin biosynthesis. Nature Biotechnology. 21: 790-5. PMID 12794638 DOI: 10.1038/Nbt834  0.748
2003 van Noort V, Snel B, Huynen MA. Predicting gene function by conserved co-expression. Trends in Genetics : Tig. 19: 238-42. PMID 12711213 DOI: 10.1016/S0168-9525(03)00056-8  0.822
2003 Huynen MA, Snel B, von Mering C, Bork P. Function prediction and protein networks. Current Opinion in Cell Biology. 15: 191-8. PMID 12648675 DOI: 10.1016/S0955-0674(03)00009-7  0.822
2003 von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B. STRING: a database of predicted functional associations between proteins. Nucleic Acids Research. 31: 258-61. PMID 12519996 DOI: 10.1093/Nar/Gkg034  0.856
2002 Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proceedings of the National Academy of Sciences of the United States of America. 99: 14422-7. PMID 12381787 DOI: 10.1073/Pnas.212527599  0.692
2002 von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature. 417: 399-403. PMID 12000970 DOI: 10.1038/Nature750  0.73
2002 Snel B, Bork P, Huynen MA. The identification of functional modules from the genomic association of genes. Proceedings of the National Academy of Sciences of the United States of America. 99: 5890-5. PMID 11983890 DOI: 10.1073/Pnas.092632599  0.801
2002 Korbel JO, Snel B, Huynen MA, Bork P. SHOT: a web server for the construction of genome phylogenies. Trends in Genetics : Tig. 18: 158-62. PMID 11858840 DOI: 10.1016/S0168-9525(01)02597-5  0.844
2002 Snel B, Bork P, Huynen MA. Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Research. 12: 17-25. PMID 11779827 DOI: 10.1101/Gr.176501  0.813
2002 Morett E, Korbel JO, Rajan E, Saab-Rincon G, Olveral L, Olveral M, Schmidt S, Snel B, Bork P. Discovery of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation Genome Informatics. 13: 365-366. DOI: 10.11234/Gi1990.13.365  0.797
2002 Snel B, Bork P, Huynen MA. Conservation of gene co-regulation in prokaryotes and eukaryotes Trends in Biotechnology. 20: 410. DOI: 10.1016/S0167-7799(02)02040-1  0.771
2001 Huynen MA, Snel B, Bork P, Gibson TJ. The phylogenetic distribution of frataxin indicates a role in iron-sulfur cluster protein assembly. Human Molecular Genetics. 10: 2463-8. PMID 11689493 DOI: 10.1093/Hmg/10.21.2463  0.805
2001 Huynen MA, Snel B, Bork P. Inversions and the dynamics of eukaryotic gene order. Trends in Genetics : Tig. 17: 304-6. PMID 11377779 DOI: 10.1016/S0168-9525(01)02302-2  0.825
2000 Lathe WC, Snel B, Bork P. Gene context conservation of a higher order than operons. Trends in Biochemical Sciences. 25: 474-9. PMID 11050428 DOI: 10.1016/S0968-0004(00)01663-7  0.843
2000 Snel B, Lehmann G, Bork P, Huynen MA. STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Research. 28: 3442-4. PMID 10982861 DOI: 10.1093/Nar/28.18.3442  0.824
2000 Huynen M, Snel B, Lathe W, Bork P. Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Research. 10: 1204-10. PMID 10958638 DOI: 10.1101/Gr.10.8.1204  0.85
2000 Dandekar T, Huynen M, Regula JT, Ueberle B, Zimmermann CU, Andrade MA, Doerks T, Sánchez-Pulido L, Snel B, Suyama M, Yuan YP, Herrmann R, Bork P. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames. Nucleic Acids Research. 28: 3278-88. PMID 10954595 DOI: 10.1093/Nar/28.17.3278  0.823
2000 Huynen M, Snel B, Lathe W, Bork P. Exploitation of gene context. Current Opinion in Structural Biology. 10: 366-70. PMID 10851194 DOI: 10.1016/S0959-440X(00)00098-1  0.837
2000 Huynen MA, Snel B. Gene and context: integrative approaches to genome analysis. Advances in Protein Chemistry. 54: 345-79. PMID 10829232 DOI: 10.1016/S0065-3233(00)54010-8  0.749
2000 Snel B, Bork P, Huynen M. Genome evolution. Gene fusion versus gene fission. Trends in Genetics : Tig. 16: 9-11. PMID 10637623 DOI: 10.1016/S0168-9525(99)01924-1  0.815
1999 Dandekar T, Schuster S, Snel B, Huynen M, Bork P. Pathway alignment: application to the comparative analysis of glycolytic enzymes. The Biochemical Journal. 343: 115-24. PMID 10493919 DOI: 10.1042/Bj3430115  0.793
1999 Bork P, Doerks T, Springer TA, Snel B. Domains in plexins: links to integrins and transcription factors. Trends in Biochemical Sciences. 24: 261-3. PMID 10390613 DOI: 10.1016/S0968-0004(99)01416-4  0.696
1999 Snel B, Bork P, Huynen MA. Genome phylogeny based on gene content. Nature Genetics. 21: 108-10. PMID 9916801 DOI: 10.1038/5052  0.83
1998 Dandekar T, Snel B, Huynen M, Bork P. Conservation of gene order: a fingerprint of proteins that physically interact. Trends in Biochemical Sciences. 23: 324-8. PMID 9787636 DOI: 10.1016/S0968-0004(98)01274-2  0.836
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