Frank Eisenhaber - Publications

Bioinformatics Institute Singapore, Singapore, Singapore 

186 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Niska-Blakie J, Gopinathan L, Low KN, Kien YL, Goh CMF, Caldez MJ, Pfeiffenberger E, Jones OS, Ong CB, Kurochkin IV, Coppola V, Tessarollo L, Choi H, Kanagasundaram Y, Eisenhaber F, et al. Knockout of the non-essential gene SUGCT creates diet-linked, age-related microbiome disbalance with a diabetes-like metabolic syndrome phenotype. Cellular and Molecular Life Sciences : Cmls. PMID 31722069 DOI: 10.1007/s00018-019-03359-z  0.64
2019 Sinha S, Nge CE, Leong CY, Ng V, Crasta S, Alfatah M, Goh F, Low KN, Zhang H, Arumugam P, Lezhava A, Chen SL, Kanagasundaram Y, Ng SB, Eisenhaber F, et al. Genomics-driven discovery of a biosynthetic gene cluster required for the synthesis of BII-Rafflesfungin from the fungus Phoma sp. F3723. Bmc Genomics. 20: 374. PMID 31088369 DOI: 10.1186/s12864-019-5762-6  1
2019 Toh YK, Shin J, Balakrishna AM, Neelagandan K, Grüber A, Eisenhaber F, Eisenhaber B, Grüber G. Effect of the additional cysteine 503 of vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F (AhpF) and the mechanism of AhpF and subunit C assembling. Free Radical Biology & Medicine. PMID 31047989 DOI: 10.1016/j.freeradbiomed.2019.04.036  1
2019 Maurer-Stroh S, Krutz NL, Kern PS, Gunalan V, Nguyen MN, Limviphuvadh V, Eisenhaber F, Gerberick GF. AllerCatPro - Prediction of protein allergenicity potential from the protein sequence. Bioinformatics (Oxford, England). PMID 30657872 DOI: 10.1093/bioinformatics/btz029  0.64
2018 Berger KA, Pigott DM, Tomlinson F, Godding D, Maurer-Stroh S, Taye B, Sirota FL, Han A, Lee RTC, Gunalan V, Eisenhaber F, Hay SI, Russell CA. The Geographic Variation of Surveillance and Zoonotic Spillover Potential of Influenza Viruses in Domestic Poultry and Swine. Open Forum Infectious Diseases. 5: ofy318. PMID 30619908 DOI: 10.1093/ofid/ofy318  0.64
2018 Sinha S, Eisenhaber B, Jensen LJ, Kalbuaji B, Eisenhaber F. Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000. Proteomics. e1800093. PMID 30265449 DOI: 10.1002/pmic.201800093  1
2018 Kamariah N, Eisenhaber B, Eisenhaber F, Grüber G. Molecular mechanism of the Escherichia coli AhpC in the function of a chaperone under heat-shock conditions. Scientific Reports. 8: 14151. PMID 30237544 DOI: 10.1038/s41598-018-32527-7  1
2018 Ng SB, Kanagasundaram Y, Fan H, Arumugam P, Eisenhaber B, Eisenhaber F. The 160K Natural Organism Library, a unique resource for natural products research. Nature Biotechnology. 36: 570-573. PMID 29979661 DOI: 10.1038/nbt.4187  1
2018 Sirota FL, Goh F, Low KN, Yang LK, Crasta SC, Eisenhaber B, Eisenhaber F, Kanagasundaram Y, Ng SB. Isolation and Identification of an Anthracimycin Analogue from , a Halophile from a Saltern, by Genomic Mining Strategy. Journal of Genomics. 6: 63-73. PMID 29805716 DOI: 10.7150/jgen.24368  1
2018 Eisenhaber B, Sinha S, Wong WC, Eisenhaber F. Function of a membrane-embedded domain evolutionarily multiplied in the GPI lipid anchor pathway proteins PIG-B, PIG-M, PIG-U, PIG-W, PIG-V, and PIG-Z. Cell Cycle (Georgetown, Tex.). 1-7. PMID 29764287 DOI: 10.1080/15384101.2018.1456294  1
2018 Limviphuvadh V, Tan CS, Konishi F, Jenjaroenpun P, Xiang JS, Kremenska Y, Mu YS, Syn N, Lee SC, Soo RA, Eisenhaber F, Maurer-Stroh S, Yong WP. Discovering novel SNPs that are correlated with patient outcome in a Singaporean cancer patient cohort treated with gemcitabine-based chemotherapy. Bmc Cancer. 18: 555. PMID 29751792 DOI: 10.1186/s12885-018-4471-x  0.64
2018 Kamariah N, Eisenhaber B, Eisenhaber F, Grüber G. Active site C-loop dynamics modulate substrate binding, catalysis, oligomerization, stability, over-oxidation and recycling of 2-Cys Peroxiredoxins. Free Radical Biology & Medicine. PMID 29474868 DOI: 10.1016/j.freeradbiomed.2018.02.027  1
2018 Wong WC, Ng HK, Tantoso E, Soong R, Eisenhaber F. Finite-size effects in transcript sequencing count distribution: its power-law correction necessarily precedes downstream normalization and comparative analysis. Biology Direct. 13: 2. PMID 29433547 DOI: 10.1186/s13062-018-0204-y  0.52
2017 Toh YK, Balakrishna AM, Manimekalai MSS, Chionh BB, Seetharaman RRC, Eisenhaber F, Eisenhaber B, Grüber G. Novel insights into the vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F. Biochimica Et Biophysica Acta. PMID 28935609 DOI: 10.1016/j.bbagen.2017.09.011  1
2017 Marakasova ES, Eisenhaber B, Maurer-Stroh S, Eisenhaber F, Baranova A. Prenylation of viral proteins by enzymes of the host: Virus-driven rationale for therapy with statins and FT/GGT1 inhibitors. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28885709 DOI: 10.1002/bies.201700014  1
2017 Baker JA, Wong WC, Eisenhaber B, Warwicker J, Eisenhaber F. Erratum to: Charged residues next to transmembrane regions revisited: "Positive-inside rule" is complemented by the "negative inside depletion/outside enrichment rule". Bmc Biology. 15: 72. PMID 28821249 DOI: 10.1186/s12915-017-0410-6  1
2017 Baker JA, Wong WC, Eisenhaber B, Warwicker J, Eisenhaber F. Charged residues next to transmembrane regions revisited: "Positive-inside rule" is complemented by the "negative inside depletion/outside enrichment rule". Bmc Biology. 15: 66. PMID 28738801 DOI: 10.1186/s12915-017-0404-4  1
2017 Taye B, Vaz C, Tanavde V, Kuznetsov VA, Eisenhaber F, Sugrue RJ, Maurer-Stroh S. Benchmarking selected computational gene network growing tools in context of virus-host interactions. Scientific Reports. 7: 5805. PMID 28724991 DOI: 10.1038/s41598-017-06020-6  0.64
2017 Kamariah N, Eisenhaber B, Eisenhaber F, Gruber G. Essential role of the flexible linker on the conformational equilibrium of bacterial peroxiredoxin reductase for effective regeneration of peroxiredoxin. The Journal of Biological Chemistry. PMID 28270505 DOI: 10.1074/jbc.M117.775858  1
2017 Lua WH, Ling WL, Su CT, Yeo JY, Verma CS, Eisenhaber B, Eisenhaber F, Gan SK. Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: a story of bad signal peptides and good ones that nevertheless do not make it. Cell Cycle (Georgetown, Tex.). 0. PMID 28103138 DOI: 10.1080/15384101.2017.1281480  1
2016 Kurochkin IV, Guarnera E, Wong JH, Eisenhaber F, Berezovsky IN. Toward Allosterically Increased Catalytic Activity of Insulin-Degrading Enzyme against Amyloid Peptides. Biochemistry. PMID 27982586 DOI: 10.1021/acs.biochem.6b00783  0.48
2016 Yap CK, Eisenhaber B, Eisenhaber F, Wong WC. xHMMER3x2: Utilizing HMMER3's speed and HMMER2's sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation. Biology Direct. 11: 63. PMID 27894340 DOI: 10.1186/s13062-016-0163-0  1
2016 Kamariah N, Sek MF, Eisenhaber B, Eisenhaber F, Grüber G. Transition steps in peroxide reduction and a molecular switch for peroxide robustness of prokaryotic peroxiredoxins. Scientific Reports. 6: 37610. PMID 27892488 DOI: 10.1038/srep37610  1
2016 Berezovsky IN, Guarnera E, Zheng Z, Eisenhaber B, Eisenhaber F. Protein function machinery: from basic structural units to modulation of activity. Current Opinion in Structural Biology. 42: 67-74. PMID 27865209 DOI: 10.1016/  1
2016 Kulemzina I, Ang K, Zhao X, Teh JT, Verma V, Suranthran S, Chavda AP, Huber RG, Eisenhaber B, Eisenhaber F, Yan J, Ivanov D. A Reversible Association between Smc Coiled Coils Is Regulated by Lysine Acetylation and Is Required for Cohesin Association with the DNA. Molecular Cell. PMID 27618487 DOI: 10.1016/j.molcel.2016.08.008  1
2016 Eisenhaber B, Kuchibhatla D, Sherman W, Sirota FL, Berezovsky IN, Wong WC, Eisenhaber F. The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment. Methods in Molecular Biology (Clifton, N.J.). 1415: 477-506. PMID 27115649 DOI: 10.1007/978-1-4939-3572-7_25  1
2015 Kamariah N, Nartey W, Eisenhaber B, Eisenhaber F, Grüber G. Low resolution solution structure of an enzymatic active AhpC10:AhpF2 ensemble of the Escherichia coli Alkyl hydroperoxide Reductase. Journal of Structural Biology. PMID 26584540 DOI: 10.1016/j.jsb.2015.11.004  1
2015 Sherman WA, Kuchibhatla DB, Limviphuvadh V, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes. Journal of Bioinformatics and Computational Biology. 13: 1550028. PMID 26503432 DOI: 10.1142/S0219720015500286  1
2015 Nartey W, Basak S, Kamariah N, Manimekalai MS, Robson S, Wagner G, Eisenhaber B, Eisenhaber F, Grüber G. NMR studies reveal a novel grab and release mechanism for efficient catalysis of the bacterial 2-Cys peroxiredoxin machinery. The Febs Journal. PMID 26402142 DOI: 10.1111/febs.13522  1
2015 Wong WC, Yap CK, Eisenhaber B, Eisenhaber F. dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity. Biology Direct. 10: 39. PMID 26228544 DOI: 10.1186/s13062-015-0068-3  1
2015 Kamariah N, Manimekalai MS, Nartey W, Eisenhaber F, Eisenhaber B, Grüber G. Crystallographic and solution studies of NAD(+)- and NADH-bond alkylhydroperoxide reductase subunit F (AhpF) from Escherichia coli provide insight into sequential enzymatic steps. Biochimica Et Biophysica Acta. PMID 26092085 DOI: 10.1016/j.bbabio.2015.06.011  1
2015 Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Single-residue posttranslational modification sites at the N-terminus, C-terminus or in-between: To be or not to be exposed for enzyme access. Proteomics. PMID 26038108 DOI: 10.1002/pmic.201400633  1
2015 Wong WC, Yap CK, Eisenhaber B, Eisenhaber F. dissectHMMER: A HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity Biology Direct. 10. DOI: 10.1186/s13062-015-0068-3  1
2014 Eisenhaber F, Sung WK, Wong L. Guest Editorial for the International Conference on Genome Informatics (GIW 2013). Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 5-6. PMID 26605388 DOI: 10.1109/TCBB.2014.2299751  1
2014 Mah TL, Yap XN, Limviphuvadh V, Li N, Sridharan S, Kuralmani V, Feng M, Liem N, Adhikari S, Yong WP, Soo RA, Maurer-Stroh S, Eisenhaber F, Tong JC. Novel SNP improves differential survivability and mortality in non-small cell lung cancer patients. Bmc Genomics. 15: S20. PMID 25521664 DOI: 10.1186/1471-2164-15-S9-S20  1
2014 Dip PV, Kamariah N, Subramanian Manimekalai MS, Nartey W, Balakrishna AM, Eisenhaber F, Eisenhaber B, Grüber G. Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli. Acta Crystallographica. Section D, Biological Crystallography. 70: 2848-62. PMID 25372677 DOI: 10.1107/S1399004714019233  1
2014 Dip PV, Kamariah N, Nartey W, Beushausen C, Kostyuchenko VA, Ng TS, Lok SM, Saw WG, Eisenhaber F, Eisenhaber B, Grüber G. Key roles of the Escherichia coli AhpC C-terminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress. Biochimica Et Biophysica Acta. 1837: 1932-43. PMID 25193562 DOI: 10.1016/j.bbabio.2014.08.007  1
2014 Maurer-Stroh S, Li Y, Bastien N, Gunalan V, Lee RT, Eisenhaber F, Booth TF. Potential human adaptation mutation of influenza A(H5N1) virus, Canada. Emerging Infectious Diseases. 20: 1580-2. PMID 25153690 DOI: 10.3201/eid2009.140240  1
2014 Eisenhaber F. Unix interfaces, Kleisli, bucandin structure, etc. -- the heroic beginning of bioinformatics in Singapore. Journal of Bioinformatics and Computational Biology. 12: 1471002. PMID 24969753 DOI: 10.1142/S0219720014710024  1
2014 Eisenhaber F, Sherman WA. 10 years for the Journal of Bioinformatics and Computational Biology (2003-2013) -- a retrospective. Journal of Bioinformatics and Computational Biology. 12: 1471001. PMID 24969752 DOI: 10.1142/S0219720014710012  1
2014 Wong WC, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. Bmc Bioinformatics. 15: 166. PMID 24890864 DOI: 10.1186/1471-2105-15-166  1
2014 Eisenhaber B, Eisenhaber S, Kwang TY, Grüber G, Eisenhaber F. Transamidase subunit GAA1/GPAA1 is a M28 family metallo-peptide-synthetase that catalyzes the peptide bond formation between the substrate protein's omega-site and the GPI lipid anchor's phosphoethanolamine. Cell Cycle (Georgetown, Tex.). 13: 1912-7. PMID 24743167 DOI: 10.4161/cc.28761  1
2014 Singh P, Maurer-Stroh S, Kurochkin I, Eisenhaber B, Eisenhaber F. Understanding the functions of peroxisomal proteins: The peroxisomal proteome, peroxisomal import, proteases and other protein families and their network organization: What has computational biology contributed? Molecular Machines Involved in Peroxisome Biogenesis and Maintenance. 187-232. DOI: 10.1007/978-3-7091-1788-0_9  1
2013 Kuznetsov V, Lee HK, Maurer-Stroh S, Molnár MJ, Pongor S, Eisenhaber B, Eisenhaber F. How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. Health Information Science and Systems. 1: 2. PMID 25825654 DOI: 10.1186/2047-2501-1-2  1
2013 Marakasova ES, Akhmatova NK, Amaya M, Eisenhaber B, Eisenhaber F, van Hoek ML, Baranova AV. [Prenylation: from bacteria to eukaryotes]. Molekuliarnaia Biologiia. 47: 717-30. PMID 25509344  1
2013 Eisenhaber F, Sung WK, Wong L. International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions. Bmc Systems Biology. 7: I1. PMID 24625351 DOI: 10.1186/1752-0509-7-S6-I1  1
2013 Ma J, Eisenhaber F, Maurer-Stroh S. Automatic phylogenetic classification of bacterial beta-lactamase sequences including structural and antibiotic substrate preference information. Journal of Bioinformatics and Computational Biology. 11: 1343011. PMID 24372040 DOI: 10.1142/S0219720013430117  1
2013 Maurer-Stroh S, Gunalan V, Wong WC, Eisenhaber F. A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads. Journal of Bioinformatics and Computational Biology. 11: 1343005. PMID 24372034 DOI: 10.1142/S0219720013430051  1
2013 Lee RT, Gunalan V, Van TD, Le LT, Eisenhaber F, Maurer-Stroh S. A new piece in the puzzle of the novel avian-origin influenza A (H7N9) virus. Biology Direct. 8: 26. PMID 24160334 DOI: 10.1186/1745-6150-8-26  1
2013 Goncearenco A, Mitternacht S, Yong T, Eisenhaber B, Eisenhaber F, Berezovsky IN. SPACER: Server for predicting allosteric communication and effects of regulation. Nucleic Acids Research. 41: W266-72. PMID 23737445 DOI: 10.1093/nar/gkt460  1
2013 Maurer-Stroh S, Lee RT, Gunalan V, Eisenhaber F. The highly pathogenic H7N3 avian influenza strain from July 2012 in Mexico acquired an extended cleavage site through recombination with host 28S rRNA. Virology Journal. 10: 139. PMID 23635025 DOI: 10.1186/1743-422X-10-139  1
2013 Saw WG, Eisenhaber B, Eisenhaber F, Grüber G. Low-resolution structure of the soluble domain GPAA1 (yGPAA170-247) of the glycosylphosphatidylinositol transamidase subunit GPAA1 from Saccharomyces cerevisiae. Bioscience Reports. 33: e00033. PMID 23458223 DOI: 10.1042/BSR20120107  1
2013 Maurer-Stroh S, Gao H, Han H, Baeten L, Schymkowitz J, Rousseau F, Zhang L, Eisenhaber F. Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding ("Huf-Zinc") motif. Journal of Bioinformatics and Computational Biology. 11: 1340008. PMID 23427990 DOI: 10.1142/S0219720013400088  1
2013 Eisenhaber F, Sung WK, Wong L. The 24th international conference on genome informatics, GIW2013, in Singapore Journal of Bioinformatics and Computational Biology. 11. DOI: 10.1142/S0219720013020034  1
2013 Marakasova ES, Akhmatova NK, Amaya M, Eisenhaber B, Eisenhaber F, van Hoek ML, Baranova AV. Prenylation: From bacteria to eukaryotes Molecular Biology. 47: 622-633. DOI: 10.1134/S0026893313050130  1
2012 Sirota FL, Batagov A, Schneider G, Eisenhaber B, Eisenhaber F, Maurer-Stroh S. Beware of moving targets: reference proteome content fluctuates substantially over the years. Journal of Bioinformatics and Computational Biology. 10: 1250020. PMID 22867629 DOI: 10.1142/S0219720012500205  1
2012 Eisenhaber F. A decade after the first full human genome sequencing: when will we understand our own genome? Journal of Bioinformatics and Computational Biology. 10: 1271001. PMID 22849370 DOI: 10.1142/S0219720012710011  1
2012 Wong WC, Maurer-Stroh S, Schneider G, Eisenhaber F. Transmembrane helix: simple or complex. Nucleic Acids Research. 40: W370-5. PMID 22564899 DOI: 10.1093/nar/gks379  1
2012 Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S. Tachyon search speeds up retrieval of similar sequences by several orders of magnitude. Bioinformatics (Oxford, England). 28: 1645-6. PMID 22531216 DOI: 10.1093/bioinformatics/bts197  1
2012 Schneider G, Sherman W, Kuchibhatla D, Ooi HS, Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Protein sequence-structure-function-network links discovered with the ANNOTATOR software suite: Application to ELYS/Mel-28 Computational Medicine: Tools and Challenges. 2147483647: 111-143. DOI: 10.1007/978-3-7091-0947-2_7  1
2011 Eisenhaber B, Sammer M, Lua WH, Benetka W, Liew LL, Yu W, Lee HK, Koranda M, Eisenhaber F, Adhikari S. Nuclear import of a lipid-modified transcription factor: mobilization of NFAT5 isoform a by osmotic stress. Cell Cycle (Georgetown, Tex.). 10: 3897-911. PMID 22071693 DOI: 10.4161/cc.10.22.18043  1
2011 Kunze M, Neuberger G, Maurer-Stroh S, Ma J, Eck T, Braverman N, Schmid JA, Eisenhaber F, Berger J. Structural requirements for interaction of peroxisomal targeting signal 2 and its receptor PEX7. The Journal of Biological Chemistry. 286: 45048-62. PMID 22057399 DOI: 10.1074/jbc.M111.301853  1
2011 Wong WC, Maurer-Stroh S, Eisenhaber F. Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins. Biology Direct. 6: 57. PMID 22024092 DOI: 10.1186/1745-6150-6-57  1
2011 Kamariah N, Eisenhaber F, Adhikari S, Eisenhaber B, Grüber G. Purification and crystallization of yeast glycosylphosphatidylinositol transamidase subunit PIG-S (PIG-S(71-467)). Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 67: 896-9. PMID 21821889 DOI: 10.1107/S1744309111024080  1
2011 Dellago H, Löscher M, Ajuh P, Ryder U, Kaisermayer C, Grillari-Voglauer R, Fortschegger K, Gross S, Gstraunthaler A, Borth N, Eisenhaber F, Lamond AI, Grillari J. Exo70, a subunit of the exocyst complex, interacts with SNEV(hPrp19/hPso4) and is involved in pre-mRNA splicing. The Biochemical Journal. 438: 81-91. PMID 21639856 DOI: 10.1042/BJ20110183  1
2011 Wong WC, Maurer-Stroh S, Eisenhaber F. The Janus-faced E-values of HMMER2: extreme value distribution or logistic function? Journal of Bioinformatics and Computational Biology. 9: 179-206. PMID 21328712 DOI: 10.1142/S0219720011005264  1
2011 Prokesch A, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C, Walenta E, Krogsdam A, Scheideler M, Papak C, Wong WC, Vinson C, Eisenhaber F, Trajanoski Z. Arxes: retrotransposed genes required for adipogenesis. Nucleic Acids Research. 39: 3224-39. PMID 21177646 DOI: 10.1093/nar/gkq1289  1
2011 Toh YK, Kamariah N, Maurer-Stroh S, Roessle M, Eisenhaber F, Adhikari S, Eisenhaber B, Grüber G. Structural insight into the glycosylphosphatidylinositol transamidase subunits PIG-K and PIG-S from yeast. Journal of Structural Biology. 173: 271-81. PMID 21134462 DOI: 10.1016/j.jsb.2010.11.026  1
2011 Lee VJ, Yap J, Maurer-Stroh S, Lee RT, Eisenhaber F, Tay JK, Ting PJ, Loh JP, Wong CW, Tan BH, Koay ES, Kelly PM, Hibberd ML. Investigation of causes of oseltamivir chemoprophylaxis failures during influenza A (H1N1-2009) outbreaks. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 50: 104-8. PMID 21094080 DOI: 10.1016/j.jcv.2010.10.004  1
2010 Lee RT, Santos CL, de Paiva TM, Cui L, Sirota FL, Eisenhaber F, Maurer-Stroh S. All that glitters is not gold--founder effects complicate associations of flu mutations to disease severity. Virology Journal. 7: 297. PMID 21040570 DOI: 10.1186/1743-422X-7-297  1
2010 Maurer-Stroh S, Paing SS, Lee RT, Eisenhaber F. Sporadic human cases of swine-origin influenza before 2009 share the Sa epitope. Cell Cycle (Georgetown, Tex.). 9: 3826-8. PMID 20930526 DOI: 10.4161/cc.9.18.13166  1
2010 Dhir S, Pacurar M, Franklin D, Gáspári Z, Kertész-Farkas A, Kocsor A, Eisenhaber F, Pongor S. Detecting atypical examples of known domain types by sequence similarity searching: the SBASE domain library approach. Current Protein & Peptide Science. 11: 538-49. PMID 20887262 DOI: 10.2174/138920310794109148  1
2010 Limviphuvadh V, Chua LL, Rahim RA, Eisenhaber F, Maurer-Stroh S, Adhikari S. Similarity of molecular phenotype between known epilepsy gene LGI1 and disease candidate gene LGI2. Bmc Biochemistry. 11: 39. PMID 20863412 DOI: 10.1186/1471-2091-11-39  1
2010 Wong WC, Maurer-Stroh S, Eisenhaber F. More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology. Plos Computational Biology. 6: e1000867. PMID 20686689 DOI: 10.1371/journal.pcbi.1000867  1
2010 Bogner-Strauss JG, Prokesch A, Sanchez-Cabo F, Rieder D, Hackl H, Duszka K, Krogsdam A, Di Camillo B, Walenta E, Klatzer A, Lass A, Pinent M, Wong WC, Eisenhaber F, Trajanoski Z. Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ. Cellular and Molecular Life Sciences : Cmls. 67: 4049-64. PMID 20552250 DOI: 10.1007/s00018-010-0424-5  1
2010 Van Damme P, Maurer-Stroh S, Hao H, Colaert N, Timmerman E, Eisenhaber F, Vandekerckhove J, Gevaert K. The substrate specificity profile of human granzyme A. Biological Chemistry. 391: 983-97. PMID 20536382 DOI: 10.1515/BC.2010.096  1
2010 Maurer-Stroh S, Lee RT, Eisenhaber F, Cui L, Phuah SP, Lin RT. A new common mutation in the hemagglutinin of the 2009 (H1N1) influenza A virus. Plos Currents. 2: RRN1162. PMID 20535229 DOI: 10.1371/currents.RRN1162  1
2010 Eisenhaber B, Eisenhaber F. Prediction of posttranslational modification of proteins from their amino acid sequence. Methods in Molecular Biology (Clifton, N.J.). 609: 365-84. PMID 20221930 DOI: 10.1007/978-1-60327-241-4_21  1
2010 Schneider G, Wildpaner M, Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment. Methods in Molecular Biology (Clifton, N.J.). 609: 257-67. PMID 20221924 DOI: 10.1007/978-1-60327-241-4_15  1
2010 Ooi HS, Schneider G, Chan YL, Lim TT, Eisenhaber B, Eisenhaber F. Databases of protein-protein interactions and complexes. Methods in Molecular Biology (Clifton, N.J.). 609: 145-59. PMID 20221918 DOI: 10.1007/978-1-60327-241-4_9  1
2010 Ooi HS, Schneider G, Lim TT, Chan YL, Eisenhaber B, Eisenhaber F. Biomolecular pathway databases. Methods in Molecular Biology (Clifton, N.J.). 609: 129-44. PMID 20221917 DOI: 10.1007/978-1-60327-241-4_8  1
2010 Limviphuvadh V, Chua LL, Eisenhaber F, Adhikari S, Maurer-Stroh S. Is LGI2 the candidate gene for partial epilepsy with pericentral spikes? Journal of Bioinformatics and Computational Biology. 8: 117-27. PMID 20183877 DOI: 10.1142/S0219720010004550  1
2010 Sirota FL, Ooi HS, Gattermayer T, Schneider G, Eisenhaber F, Maurer-Stroh S. Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset. Bmc Genomics. 11: S15. PMID 20158872 DOI: 10.1186/1471-2164-11-S1-S15  1
2010 Mujezinovic N, Schneider G, Wildpaner M, Mechtler K, Eisenhaber F. Reducing the haystack to find the needle: improved protein identification after fast elimination of non-interpretable peptide MS/MS spectra and noise reduction. Bmc Genomics. 11: S13. PMID 20158870 DOI: 10.1186/1471-2164-11-S1-S13  1
2010 Kawase-Koga Y, Low R, Otaegi G, Pollock A, Deng H, Eisenhaber F, Maurer-Stroh S, Sun T. RNAase-III enzyme Dicer maintains signaling pathways for differentiation and survival in mouse cortical neural stem cells. Journal of Cell Science. 123: 586-94. PMID 20103535 DOI: 10.1242/jcs.059659  1
2009 Tse WK, Eisenhaber B, Ho SH, Ng Q, Eisenhaber F, Jiang YJ. Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development. Bmc Genomics. 10: 637. PMID 20040115 DOI: 10.1186/1471-2164-10-637  1
2009 Ranganathan S, Eisenhaber F, Tong JC, Tan TW. Extending Asia Pacific bioinformatics into new realms in the "-omics" era. Bmc Genomics. 10: S1. PMID 19958472 DOI: 10.1186/1471-2164-10-S3-S1  1
2009 Eisenhaber F, Kwoh CK, Ng SK, Sung WK, Sung WK, Wong L. Brief overview of bioinformatics activities in Singapore. Plos Computational Biology. 5: e1000508. PMID 19779544 DOI: 10.1371/journal.pcbi.1000508  1
2009 Grillari J, Löscher M, Denegri M, Lee K, Fortschegger K, Eisenhaber F, Ajuh P, Lamond AI, Katinger H, Grillari-Voglauer R. Blom7alpha is a novel heterogeneous nuclear ribonucleoprotein K homology domain protein involved in pre-mRNA splicing that interacts with SNEVPrp19-Pso4. The Journal of Biological Chemistry. 284: 29193-204. PMID 19641227 DOI: 10.1074/jbc.M109.036632  1
2009 Maurer-Stroh S, Ma J, Lee RT, Sirota FL, Eisenhaber F. Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites. Biology Direct. 4: 18; discussion 18. PMID 19457254 DOI: 10.1186/1745-6150-4-18  1
2009 Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G. ANNIE: integrated de novo protein sequence annotation. Nucleic Acids Research. 37: W435-40. PMID 19389726 DOI: 10.1093/nar/gkp254  1
2009 Dhar PK, Thwin CS, Tun K, Tsumoto Y, Maurer-Stroh S, Eisenhaber F, Surana U. Synthesizing non-natural parts from natural genomic template. Journal of Biological Engineering. 3: 2. PMID 19187561 DOI: 10.1186/1754-1611-3-2  1
2009 Benetka W, Mehlmer N, Maurer-Stroh S, Sammer M, Koranda M, Neumüller R, Betschinger J, Knoblich JA, Teige M, Eisenhaber F. Experimental testing of predicted myristoylation targets involved in asymmetric cell division and calcium-dependent signalling (Cell Cycle (2008) 7, (3709-3719)) Cell Cycle. 8: 508-509.  1
2008 Benetka W, Mehlmer N, Maurer-Stroh S, Sammer M, Koranda M, Neumüller R, Betschinger J, Knoblich JA, Teige M, Eisenhaber F. Experimental testing of predicted myristoylation targets involved in asymmetric cell division and calcium-dependent signalling. Cell Cycle (Georgetown, Tex.). 7: 3709-19. PMID 19029837  1
2008 Wong WC, Loh M, Eisenhaber F. On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation. Biology Direct. 3: 23. PMID 18522715 DOI: 10.1186/1745-6150-3-23  1
2007 Eisenhaber B, Eisenhaber F. Posttranslational modifications and subcellular localization signals: indicators of sequence regions without inherent 3D structure? Current Protein & Peptide Science. 8: 197-203. PMID 17430201 DOI: 10.2174/138920307780363424  1
2007 Maurer-Stroh S, Koranda M, Benetka W, Schneider G, Sirota FL, Eisenhaber F. Towards complete sets of farnesylated and geranylgeranylated proteins. Plos Computational Biology. 3: e66. PMID 17411337 DOI: 10.1371/journal.pcbi.0030066  1
2007 Eisenhaber B, Chumak N, Eisenhaber F, Hauser MT. The ring between ring fingers (RBR) protein family. Genome Biology. 8: 209. PMID 17367545 DOI: 10.1186/gb-2007-8-3-209  1
2007 Neuberger G, Schneider G, Eisenhaber F. pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model. Biology Direct. 2: 1. PMID 17222345 DOI: 10.1186/1745-6150-2-1  1
2006 Mujezinovic N, Raidl G, Hutchins JR, Peters JM, Mechtler K, Eisenhaber F. Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise. Proteomics. 6: 5117-31. PMID 16955515 DOI: 10.1002/pmic.200500928  1
2006 Novatchkova M, Schneider G, Fritz R, Eisenhaber F, Schleiffer A. DOUTfinder--identification of distant domain outliers using subsignificant sequence similarity. Nucleic Acids Research. 34: W214-8. PMID 16844996 DOI: 10.1093/nar/gkl332  1
2006 Watrin E, Schleiffer A, Tanaka K, Eisenhaber F, Nasmyth K, Peters JM. Human Scc4 is required for cohesin binding to chromatin, sister-chromatid cohesion, and mitotic progression. Current Biology : Cb. 16: 863-74. PMID 16682347 DOI: 10.1016/j.cub.2006.03.049  1
2006 Schneider G, Neuberger G, Wildpaner M, Tian S, Berezovsky I, Eisenhaber F. Application of a sensitive collection heuristic for very large protein families: evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. Bmc Bioinformatics. 7: 164. PMID 16551354 DOI: 10.1186/1471-2105-7-164  1
2006 Benetka W, Koranda M, Maurer-Stroh S, Pittner F, Eisenhaber F. Farnesylation or geranylgeranylation? Efficient assays for testing protein prenylation in vitro and in vivo. Bmc Biochemistry. 7: 6. PMID 16507103 DOI: 10.1186/1471-2091-7-6  1
2006 Benetka W, Koranda M, Eisenhaber F. Protein prenylation: An (almost) comprehensive overview on discovery history, enzymology, and significance in physiology and disease Monatshefte Fur Chemie. 137: 1241-1281. DOI: 10.1007/s00706-006-0534-9  1
2005 Hackl H, Burkard TR, Sturn A, Rubio R, Schleiffer A, Tian S, Quackenbush J, Eisenhaber F, Trajanoski Z. Molecular processes during fat cell development revealed by gene expression profiling and functional annotation. Genome Biology. 6: R108. PMID 16420668 DOI: 10.1186/gb-2005-6-13-r108  1
2005 Grillari J, Ajuh P, Stadler G, Löscher M, Voglauer R, Ernst W, Chusainow J, Eisenhaber F, Pokar M, Fortschegger K, Grey M, Lamond AI, Katinger H. SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly. Nucleic Acids Research. 33: 6868-83. PMID 16332694 DOI: 10.1093/nar/gki986  1
2005 Novatchkova M, Wildpaner M, Schweizer D, Eisenhaber F. PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. Nucleic Acids Research. 33: W121-5. PMID 15980439 DOI: 10.1093/nar/gki373  1
2005 Maurer-Stroh S, Eisenhaber F. Refinement and prediction of protein prenylation motifs. Genome Biology. 6: R55. PMID 15960807 DOI: 10.1186/gb-2005-6-6-r55  1
2005 Kraft C, Vodermaier HC, Maurer-Stroh S, Eisenhaber F, Peters JM. The WD40 propeller domain of Cdh1 functions as a destruction box receptor for APC/C substrates. Molecular Cell. 18: 543-53. PMID 15916961 DOI: 10.1016/j.molcel.2005.04.023  1
2005 Novatchkova M, Bachmair A, Eisenhaber B, Eisenhaber F. Proteins with two SUMO-like domains in chromatin-associated complexes: the RENi (Rad60-Esc2-NIP45) family. Bmc Bioinformatics. 6: 22. PMID 15698469 DOI: 10.1186/1471-2105-6-22  1
2005 Betschinger J, Eisenhaber F, Knoblich JA. Phosphorylation-induced autoinhibition regulates the cytoskeletal protein Lethal (2) giant larvae. Current Biology : Cb. 15: 276-82. PMID 15694314 DOI: 10.1016/j.cub.2005.01.012  1
2004 Neuberger G, Kunze M, Eisenhaber F, Berger J, Hartig A, Brocard C. Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins. Genome Biology. 5: R97. PMID 15575971 DOI: 10.1186/gb-2004-5-12-r97  1
2004 Zimmermann R, Strauss JG, Haemmerle G, Schoiswohl G, Birner-Gruenberger R, Riederer M, Lass A, Neuberger G, Eisenhaber F, Hermetter A, Zechner R. Fat mobilization in adipose tissue is promoted by adipose triglyceride lipase. Science (New York, N.Y.). 306: 1383-6. PMID 15550674 DOI: 10.1126/science.1100747  1
2004 Novatchkova M, Budhiraja R, Coupland G, Eisenhaber F, Bachmair A. SUMO conjugation in plants. Planta. 220: 1-8. PMID 15449058 DOI: 10.1007/s00425-004-1370-y  1
2004 Silverman J, Takai H, Buonomo SB, Eisenhaber F, de Lange T. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes & Development. 18: 2108-19. PMID 15342490 DOI: 10.1101/gad.1216004  1
2004 Kurzbauer R, Teis D, de Araujo ME, Maurer-Stroh S, Eisenhaber F, Bourenkov GP, Bartunik HD, Hekman M, Rapp UR, Huber LA, Clausen T. Crystal structure of the p14/MP1 scaffolding complex: how a twin couple attaches mitogen-activated protein kinase signaling to late endosomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 10984-9. PMID 15263099 DOI: 10.1073/pnas.0403435101  1
2004 Lorenz A, Wells JL, Pryce DW, Novatchkova M, Eisenhaber F, McFarlane RJ, Loidl J. S. pombe meiotic linear elements contain proteins related to synaptonemal complex components. Journal of Cell Science. 117: 3343-51. PMID 15226405 DOI: 10.1242/jcs.01203  1
2004 Eisenhaber B, Eisenhaber F, Maurer-Stroh S, Neuberger G. Prediction of sequence signals for lipid post-translational modifications: insights from case studies. Proteomics. 4: 1614-25. PMID 15174131 DOI: 10.1002/pmic.200300781  1
2004 Maurer-Stroh S, Eisenhaber F. Myristoylation of viral and bacterial proteins. Trends in Microbiology. 12: 178-85. PMID 15051068 DOI: 10.1016/j.tim.2004.02.006  1
2004 Eisenhaber B, Schneider G, Wildpaner M, Eisenhaber F. A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. Journal of Molecular Biology. 337: 243-53. PMID 15003443 DOI: 10.1016/j.jmb.2004.01.025  1
2004 Maurer-Stroh S, Gouda M, Novatchkova M, Schleiffer A, Schneider G, Sirota FL, Wildpaner M, Hayashi N, Eisenhaber F. MYRbase: analysis of genome-wide glycine myristoylation enlarges the functional spectrum of eukaryotic myristoylated proteins. Genome Biology. 5: R21. PMID 15003124 DOI: 10.1186/gb-2004-5-3-r21  1
2004 Rabitsch KP, Gregan J, Schleiffer A, Javerzat JP, Eisenhaber F, Nasmyth K. Two fission yeast homologs of Drosophila Mei-S332 are required for chromosome segregation during meiosis I and II. Current Biology : Cb. 14: 287-301. PMID 14972679 DOI: 10.1016/j.cub.2004.01.051  1
2004 Novatchkova M, Eisenhaber F. Linking transcriptional mediators via the GACKIX domain super family. Current Biology : Cb. 14: R54-5. PMID 14738747 DOI: 10.1016/j.cub.2003.12.042  1
2004 Cserzo M, Eisenhaber F, Eisenhaber B, Simon I. TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter. Bioinformatics (Oxford, England). 20: 136-7. PMID 14693825 DOI: 10.1093/bioinformatics/btg394  1
2003 Eisenhaber B, Wildpaner M, Schultz CJ, Borner GH, Dupree P, Eisenhaber F. Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice. Plant Physiology. 133: 1691-701. PMID 14681532 DOI: 10.1104/pp.103.023580  1
2003 Washietl S, Eisenhaber F. Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses. Bmc Bioinformatics. 4: 55. PMID 14604445 DOI: 10.1186/1471-2105-4-55  1
2003 Vodermaier HC, Gieffers C, Maurer-Stroh S, Eisenhaber F, Peters JM. TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1. Current Biology : Cb. 13: 1459-68. PMID 12956947 DOI: 10.1016/S0960-9822(03)00581-5  1
2003 Maurer-Stroh S, Washietl S, Eisenhaber F. Protein prenyltransferases: anchor size, pseudogenes and parasites. Biological Chemistry. 384: 977-89. PMID 12956414 DOI: 10.1515/BC.2003.110  1
2003 Eisenhaber F, Eisenhaber B, Kubina W, Maurer-Stroh S, Neuberger G, Schneider G, Wildpaner M. Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Pi, NMT and PTS1. Nucleic Acids Research. 31: 3631-4. PMID 12824382 DOI: 10.1093/nar/gkg537  1
2003 Novatchkova M, Leibbrandt A, Werzowa J, Neubüser A, Eisenhaber F. The STIR-domain superfamily in signal transduction, development and immunity. Trends in Biochemical Sciences. 28: 226-9. PMID 12765832 DOI: 10.1016/S0968-0004(03)00067-7  1
2003 Wick N, Luedemann S, Vietor I, Cotten M, Wildpaner M, Schneider G, Eisenhaber F, Huber LA. Induction of short interspersed nuclear repeat-containing transcripts in epithelial cells upon infection with a chicken adenovirus. Journal of Molecular Biology. 328: 779-90. PMID 12729754 DOI: 10.1016/S0022-2836(03)00363-2  1
2003 Neuberger G, Maurer-Stroh S, Eisenhaber B, Hartig A, Eisenhaber F. Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence. Journal of Molecular Biology. 328: 581-92. PMID 12706718 DOI: 10.1016/S0022-2836(03)00319-X  1
2003 Neuberger G, Maurer-Stroh S, Eisenhaber B, Hartig A, Eisenhaber F. Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences. Journal of Molecular Biology. 328: 567-79. PMID 12706717 DOI: 10.1016/S0022-2836(03)00318-8  1
2003 Maurer-Stroh S, Washietl S, Eisenhaber F. Protein prenyltransferases. Genome Biology. 4: 212. PMID 12702202 DOI: 10.1186/gb-2003-4-4-212  1
2003 Schleiffer A, Kaitna S, Maurer-Stroh S, Glotzer M, Nasmyth K, Eisenhaber F. Kleisins: a superfamily of bacterial and eukaryotic SMC protein partners. Molecular Cell. 11: 571-5. PMID 12667442 DOI: 10.1016/S1097-2765(03)00108-4  1
2003 Eisenhaber B, Maurer-Stroh S, Novatchkova M, Schneider G, Eisenhaber F. Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post-translational transfer to proteins. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 367-85. PMID 12655644 DOI: 10.1002/bies.10254  1
2003 Maurer-Stroh S, Dickens NJ, Hughes-Davies L, Kouzarides T, Eisenhaber F, Ponting CP. The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains. Trends in Biochemical Sciences. 28: 69-74. PMID 12575993 DOI: 10.1016/S0968-0004(03)00004-5  1
2003 Eisenhaber F. Biological discoveries with biomolecular sequence analysis. Case studies: Posttranslational modifications of proteins and complexes for chromatin organization Apbme 2003 - Ieee Embs Asian-Pacific Conference On Biomedical Engineering 2003. 20-21. DOI: 10.1109/APBME.2003.1302563  1
2002 Cserzö M, Eisenhaber F, Eisenhaber B, Simon I. On filtering false positive transmembrane protein predictions. Protein Engineering. 15: 745-52. PMID 12456873  1
2002 Novatchkova M, Eisenhaber F. A CH domain-containing N terminus in NuMA? Protein Science. 11: 2281-2284. PMID 12237450 DOI: 10.1110/ps.0221002  1
2002 Maurer-Stroh S, Eisenhaber B, Eisenhaber F. N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence. Journal of Molecular Biology. 317: 541-57. PMID 11955008 DOI: 10.1006/jmbi.2002.5426  1
2002 Maurer-Stroh S, Eisenhaber B, Eisenhaber F. N-terminal N-myristoylation of proteins: refinement of the sequence motif and its taxon-specific differences. Journal of Molecular Biology. 317: 523-40. PMID 11955007 DOI: 10.1006/jmbi.2002.5425  1
2002 Ivanov D, Schleiffer A, Eisenhaber F, Mechtler K, Haering CH, Nasmyth K. Eco1 is a novel acetyltransferase that can acetylate proteins involved in cohesion. Current Biology : Cb. 12: 323-8. PMID 11864574 DOI: 10.1016/S0960-9822(02)00681-4  1
2002 Wildpaner M, Schneider G, Schleiffer A, Eisenhaber F. Taxonomy workbench Bioinformatics. 17: 1179-1182. PMID 11751226  1
2001 Novatchkova M, Eisenhaber F. Can molecular mechanisms of biological processes be extracted from expression profiles? Case study: Endothelial contribution to tumor-induced angiogenesis Bioessays. 23: 1159-1175. PMID 11746235 DOI: 10.1002/bies.10013  1
2001 Bachmair A, Novatchkova M, Potuschak T, Eisenhaber F. Ubiquitylation in plants: A post-genomic look at a post-translational modification Trends in Plant Science. 6: 463-470. PMID 11590065 DOI: 10.1016/S1360-1385(01)02080-5  1
2001 Christian S, Ahorn H, Novatchkoval M, Garin-Chesa P, Park JE, Weber G, Eisenhaber F, Rettig WJ, Lenter MC. Molecular Cloning and Characterization of EndoGlyx-1, an EMILIN-like Multisubunit Glycoprotein of Vascular Endothelium Journal of Biological Chemistry. 276: 48588-48595. PMID 11559704  1
2001 Eisenhaber F, Wechselberger C, Kreil G. The Brix domain protein family - A key to the ribosomal biogenesis pathway? Trends in Biochemical Sciences. 26: 345-347. PMID 11406393 DOI: 10.1016/S0968-0004(01)01851-5  1
2001 Eisenhaber B, Bork P, Eisenhaber F. Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes. Protein Engineering. 14: 17-25. PMID 11287675  1
2001 Christian S, Ahorn H, Koehler A, Eisenhaber F, Rodi HP, Garin-Chesa P, Park JE, Rettig WJ, Lenter MC. Molecular Cloning and Characterization of Endosialin, a C-type Lectin-like Cell Surface Receptor of Tumor Endothelium Journal of Biological Chemistry. 276: 7408-7414. PMID 11084048 DOI: 10.1074/jbc.M009604200  1
2000 Panizza S, Tanaka T, Hochwagen A, Eisenhaber F, Nasmyth K. Pds5 cooperates with cohesin in maintaining sister chromatid cohesion. Current Biology : Cb. 10: 1557-64. PMID 11137006 DOI: 10.1016/S0960-9822(00)00854-X  1
2000 Rea S, Eisenhaber F, O'Carroll D, Strahl BD, Sun ZW, Schmid M, Opravil S, Mechtier K, Ponting CP, Allis CD, Jenuwein T. Regulation of chromatin structure by site-specific histone H3 methyltransferases Nature. 406: 593-599. PMID 10949293 DOI: 10.1038/35020506  1
2000 Eisenhaber B, Bork P, Yuan Y, Löffler G, Eisenhaber F. Automated annotation of GPI anchor sites: case study C. elegans. Trends in Biochemical Sciences. 25: 340-1. PMID 10871885  1
2000 Senti K, Keleman K, Eisenhaber F, Dickson BJ. brakeless is required for lamina targeting of R1-R6 axons in the Drosophila visual system. Development (Cambridge, England). 127: 2291-301. PMID 10804172  1
1999 Eisenhaber B, Bork P, Eisenhaber F. Prediction of potential GPI-modification sites in proprotein sequences. Journal of Molecular Biology. 292: 741-58. PMID 10497036 DOI: 10.1006/jmbi.1999.3069  1
1999 Eisenhaber F, Bork P. Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. Bioinformatics (Oxford, England). 15: 528-35. PMID 10487860  1
1999 Sunyaev SR, Eisenhaber F, Rodchenkov IV, Eisenhaber B, Tumanyan VG, Kuznetsov EN. PSIC: profile extraction from sequence alignments with position-specific counts of independent observations. Protein Engineering. 12: 387-94. PMID 10360979  1
1999 Eisenhaber F. Hydrophobic regions on protein surfaces Perspectives in Drug Discovery and Design. 17: 27-42. DOI: 10.1023/A:1008766422140  1
1999 Sunyaev SR, Eisenhaber F, Tumanyan VG. An approach to the inverse folding problem based on the multiple structural alignment Biofizika. 44: 623.  1
1998 Eisenhaber B, Bork P, Eisenhaber F. Sequence properties of GPI-anchored proteins near the omega-site: constraints for the polypeptide binding site of the putative transamidase. Protein Engineering. 11: 1155-61. PMID 9930665  1
1998 Bork P, Dandekar T, Diaz-Lazcoz Y, Eisenhaber F, Huynen M, Yuan Y. Predicting function: from genes to genomes and back. Journal of Molecular Biology. 283: 707-25. PMID 9790834 DOI: 10.1006/jmbi.1998.2144  1
1998 Eisenhaber F, Bork P. Wanted: subcellular localization of proteins based on sequence. Trends in Cell Biology. 8: 169-70. PMID 9695832 DOI: 10.1016/S0962-8924(98)01226-4  1
1998 Huynen M, Doerks T, Eisenhaber F, Orengo C, Sunyaev S, Yuan Y, Bork P. Homology-based fold predictions for Mycoplasma genitalium proteins. Journal of Molecular Biology. 280: 323-6. PMID 9665839 DOI: 10.1006/jmbi.1998.1884  1
1998 Sunyaev SR, Eisenhaber F, Argos P, Kuznetsov EN, Tumanyan VG. Are knowledge-based potentials derived from protein structure sets discriminative with respect to amino acid types? Proteins. 31: 225-46. PMID 9593195 DOI: 10.1002/(SICI)1097-0134(19980515)31:3<225::AID-PROT1>3.0.CO;2-I  1
1998 Bork P, Dandekar T, Eisenhaber F, Huynen M. Characterization of targeting domains by sequence analysis: glycogen-binding domains in protein phosphatases. Journal of Molecular Medicine (Berlin, Germany). 76: 77-9. PMID 9500672 DOI: 10.1007/s001090050194  1
1997 Carugo O, Eisenhaber F. Probabilistic evaluation of similarity between pairs of three-dimensional protein structures utilizing temperature factors Journal of Applied Crystallography. 30: 547-549.  1
1996 Eisenhaber F, Argos P. Hydrophobic regions on protein surfaces: Definition based on hydration shell structure and a quick method for their computation Protein Engineering. 9: 1121-1133. PMID 9010925  1
1996 Eisenhaber F. Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures Protein Science. 5: 1676-1686. PMID 8844856  1
1996 Eisenhaber F, Frömmel C, Argos P. Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class Proteins: Structure, Function and Genetics. 25: 169-179. PMID 8811733 DOI: 10.1002/(SICI)1097-0134(199606)25:2<169::AID-PROT3>3.0.CO;2-D  1
1996 Eisenhaber F, Imperiale F, Argos P, Frömmel C. Prediction of secondary structural content of proteins from their amino acid composition alone. I. New analytic vector decomposition methods Proteins: Structure, Function and Genetics. 25: 157-168. PMID 8811732 DOI: 10.1002/(SICI)1097-0134(199606)25:2<157::AID-PROT2>3.0.CO;2-F  1
1996 Walther D, Eisenhaber F, Argos P. Principles of helix-helix packing in proteins: The helical lattice superposition model Journal of Molecular Biology. 255: 536-553. PMID 8568896 DOI: 10.1006/jmbi.1996.0044  1
1995 Juffer AH, Eisenhaber F, Hubbard SJ, Walther D, Argos P. Comparison of atomic solvation parametric sets: Applicability and limitations in protein folding and binding Protein Science. 4: 2499-2509. PMID 8580840  1
1995 Eisenhaber F, Persson B, Argos P. Protein structure prediction: Recognition of primary, secondary, and tertiary structural features from amino acid sequence Critical Reviews in Biochemistry and Molecular Biology. 30: 1-94. PMID 7587278 DOI: 10.3109/10409239509085139  1
1993 Schrauber H, Eisenhaber F, Argos P. Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins Journal of Molecular Biology. 230: 592-612. PMID 8464066  1
1993 Yesipova NG, Lazarev YA, Tiktopulo YI, Eisenhaber F. Experimental evidence in favour of a new interpretation of the role of the imino acids in the thermodynamics of proteins of the collagen type Biophysics. 38: 199-201.  1
1993 Eisenhaber F, Argos P. Improved strategy in analytic surface calculation for molecular systems: Handling of singularities and computational efficiency Journal of Computational Chemistry. 14: 1272-1280.  1
1992 Eisenhaber F, Schulz W. Monte Carlo simulation of the hydration shell of double-helical amylose: A left-handed antiparallel double helix fits best into liquid water structure Biopolymers. 32: 1643-1664. DOI: 10.1002/bip.360321207  1
1992 Tumanyan VG, Bogulenkova VN, Yesipova NG, Eisenhaber F. Conformation of the triple helix of collagen as a function of its primary structure Biophysics. 37: 1-4.  1
1992 Yesipova NG, Eisenhaber F, Eisenmenger FA, Tumanyan VG. New interpretation of the thermodynamic role of the imino acids in collagen. Resolution of the thermodynamic paradox Biophysics. 37: 56-60.  1
1992 Eisenhaber F, Adzhubei AA, Eisenmenger FA, Yesipova NG. Hydration of the left helix of the poly-l-proline II type. Investigation by the Monte Carlo method Biophysics. 37: 51-55.  1
1990 Eisenhaber F, Mannik JH, Tumanyan VG. Structural principles of B-DNA grooves hydration in fibers as revealed by Monte Carlo simulations and X-ray diffraction Biopolymers. 29: 1453-1464. PMID 2361155 DOI: 10.1002/bip.360291012  1
1990 Eisenhaber F, Tumanyan VG, Abagyan RA. Structure of the hydration shells of oligo (dA-dT)·oligo(dA-dT) and oligo(dA)·oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations Biopolymers. 30: 563-581. PMID 2265229  1
1989 Eisenhaber F, Tumanyan VG, Eisenmenger F, Gunia W. Hydration of B-DNA: Comparison between the water network around poly(dG) · poly(dC) and poly(dG-dC) · poly(dG-dC) on the basis of Monte Carlo computations Biopolymers. 28: 741-761. PMID 2706312  1
1988 Eisenhaber F, Tumanian VG. Structure of the hydration envelope of the B-form of polydeoxyribonucleotides poly(dA-dC).poly(dG-dT) and poly(dA-dG).poly(dTs-dT) from the data of Monte-Carlo simulation | Struktura gidratnoǐ obolochki polidezoksiribonukleotidov v B-forme poli(dA-dTs).poli(dG-dT) i poli(dA-dG).(poli(dTs-dT) soglasno rezul'tatam simuliatsii metodom Monte-Karlo Biofizika. 33: 422-429. PMID 3167107  1
1988 Eisenhaber F, Tumanyan BG. Structure of the hydrate sheath of polydesoxyribonucleotides in the B-form poly(dA-dC)·poly(dG-dT) and poly(dA-dG)·poly(dC-dT) from the results of simulation by the Monte Carlo method Biophysics. 33: 453-462.  1
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