| Year |
Citation |
Score |
| 2021 |
Andrade A, Hernández-Eligio A, Tirado AL, Vega-Alvarado L, Olvera M, Morett E, Juárez K. Specialization of the Reiterated Copies of the Heterodimeric Integration Host Factor Genes in . Frontiers in Microbiology. 12: 626443. PMID 33737919 DOI: 10.3389/fmicb.2021.626443 |
0.389 |
|
| 2016 |
González G, Labastida A, Jímenez-Jacinto V, Vega-Alvarado L, Olvera M, Morett E, Juárez K. Global transcriptional start site mapping in Geobacter sulfurreducens during growth with two different electron acceptors. Fems Microbiology Letters. PMID 27488344 DOI: 10.1093/Femsle/Fnw175 |
0.412 |
|
| 2016 |
Hernández-Eligio A, Andrade Á, Soto L, Morett E, Juárez K. The unphosphorylated form of the PilR two-component system regulates pilA gene expression in Geobacter sulfurreducens. Environmental Science and Pollution Research International. PMID 26888530 DOI: 10.1007/S11356-016-6192-5 |
0.478 |
|
| 2014 |
Meysman P, Collado-Vides J, Morett E, Viola R, Engelen K, Laukens K. Structural properties of prokaryotic promoter regions correlate with functional features. Plos One. 9: e88717. PMID 24516674 DOI: 10.1371/Journal.Pone.0088717 |
0.412 |
|
| 2014 |
Gallarato LA, Sánchez DG, Olvera L, Primo ED, Garrido MN, Beassoni PR, Morett E, Lisa AT. Exopolyphosphatase of Pseudomonas aeruginosa is essential for the production of virulence factors, and its expression is controlled by NtrC and PhoB acting at two interspaced promoters. Microbiology (Reading, England). 160: 406-17. PMID 24275100 DOI: 10.1099/Mic.0.074773-0 |
0.356 |
|
| 2013 |
Balderas-Martínez YI, Savageau M, Salgado H, Pérez-Rueda E, Morett E, Collado-Vides J. Transcription factors in Escherichia coli prefer the holo conformation. Plos One. 8: e65723. PMID 23776535 DOI: 10.1371/Journal.Pone.0065723 |
0.434 |
|
| 2013 |
Weiss V, Medina-Rivera A, Huerta AM, Santos-Zavaleta A, Salgado H, Morett E, Collado-Vides J. Evidence classification of high-throughput protocols and confidence integration in RegulonDB. Database : the Journal of Biological Databases and Curation. 2013: bas059. PMID 23327937 DOI: 10.1093/Database/Bas059 |
0.348 |
|
| 2013 |
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, ... ... Morett E, et al. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research. 41: D203-13. PMID 23203884 DOI: 10.1093/Nar/Gks1201 |
0.334 |
|
| 2012 |
Aguilar C, Escalante A, Flores N, de Anda R, Riveros-McKay F, Gosset G, Morett E, BolÃvar F. Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport system. Bmc Genomics. 13: 385. PMID 22884033 DOI: 10.1186/1471-2164-13-385 |
0.356 |
|
| 2012 |
Flores H, Lin S, Contreras-Ferrat G, Cronan JE, Morett E. Evolution of a new function in an esterase: simple amino acid substitutions enable the activity present in the larger paralog, BioH. Protein Engineering, Design & Selection : Peds. 25: 387-95. PMID 22691705 DOI: 10.1093/Protein/Gzs035 |
0.385 |
|
| 2012 |
Gallego-Hernández AL, Hernández-Lucas I, De la Cruz MA, Olvera L, Morett E, Medina-Aparicio L, Ramírez-Trujillo JA, Vázquez A, Fernández-Mora M, Calva E. Transcriptional regulation of the assT-dsbL-dsbI gene cluster in Salmonella enterica serovar Typhi IMSS-1 depends on LeuO, H-NS, and specific growth conditions. Journal of Bacteriology. 194: 2254-64. PMID 22343301 DOI: 10.1128/Jb.06164-11 |
0.421 |
|
| 2012 |
Saab-Rincón G, Olvera L, Olvera M, Rudiño-Piñera E, Benites E, Soberón X, Morett E. Evolutionary walk between (β/α)(8) barrels: catalytic migration from triosephosphate isomerase to thiamin phosphate synthase. Journal of Molecular Biology. 416: 255-70. PMID 22226942 DOI: 10.1016/J.Jmb.2011.12.042 |
0.385 |
|
| 2011 |
Gama-Castro S, Salgado H, Peralta-Gil M, Santos-Zavaleta A, Muñiz-Rascado L, Solano-Lira H, Jimenez-Jacinto V, Weiss V, García-Sotelo JS, López-Fuentes A, Porrón-Sotelo L, Alquicira-Hernández S, Medina-Rivera A, Martínez-Flores I, Alquicira-Hernández K, ... ... Morett E, et al. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Research. 39: D98-105. PMID 21051347 DOI: 10.1093/Nar/Gkq1110 |
0.411 |
|
| 2011 |
Massimelli MJ, Sánchez DG, Buchieri MV, Olvera L, Beassoni PR, Schweizer HP, Morett E, Lisa AT. Choline catabolism, σ⁵⁴ factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene. Microbiological Research. 166: 380-90. PMID 20869215 DOI: 10.1016/J.Micres.2010.07.004 |
0.458 |
|
| 2009 |
Mendoza-Vargas A, Olvera L, Olvera M, Grande R, Vega-Alvarado L, Taboada B, Jimenez-Jacinto V, Salgado H, Juárez K, Contreras-Moreira B, Huerta AM, Collado-Vides J, Morett E. Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli. Plos One. 4: e7526. PMID 19838305 DOI: 10.1371/Journal.Pone.0007526 |
0.464 |
|
| 2009 |
Olvera L, Mendoza-Vargas A, Flores N, Olvera M, Sigala JC, Gosset G, Morett E, Bolívar F. Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation. Plos One. 4: e7466. PMID 19838295 DOI: 10.1371/Journal.Pone.0007466 |
0.447 |
|
| 2009 |
Collado-Vides J, Salgado H, Morett E, Gama-Castro S, Jiménez-Jacinto V, Martínez-Flores I, Medina-Rivera A, Muñiz-Rascado L, Peralta-Gil M, Santos-Zavaleta A. Bioinformatics resources for the study of gene regulation in bacteria. Journal of Bacteriology. 191: 23-31. PMID 18978060 DOI: 10.1128/Jb.01017-08 |
0.439 |
|
| 2008 |
Watanabe RL, Morett E, Vallejo EE. Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. Bmc Bioinformatics. 9: 285. PMID 18559112 DOI: 10.1186/1471-2105-9-285 |
0.317 |
|
| 2008 |
Morett E, Saab-Rincón G, Olvera L, Olvera M, Flores H, Grande R. Sensitive genome-wide screen for low secondary enzymatic activities: the YjbQ family shows thiamin phosphate synthase activity. Journal of Molecular Biology. 376: 839-53. PMID 18178222 DOI: 10.1016/J.Jmb.2007.12.017 |
0.397 |
|
| 2008 |
Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, Bonavides-Martínez C, Abreu-Goodger C, Rodríguez-Penagos C, Miranda-Ríos J, Morett E, et al. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Research. 36: D120-4. PMID 18158297 DOI: 10.1093/Nar/Gkm994 |
0.422 |
|
| 2007 |
Dago AE, Wigneshweraraj SR, Buck M, Morett E. A role for the conserved GAFTGA motif of AAA+ transcription activators in sensing promoter DNA conformation. The Journal of Biological Chemistry. 282: 1087-97. PMID 17090527 DOI: 10.1074/Jbc.M608715200 |
0.436 |
|
| 2007 |
Hernández-Urzúa E, Zamorano-Sánchez DS, Ponce-Coria J, Morett E, Grogan S, Poole RK, Membrillo-Hernández J. Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype. Archives of Microbiology. 187: 67-77. PMID 17024490 DOI: 10.1007/S00203-006-0175-8 |
0.426 |
|
| 2006 |
Avonce N, Mendoza-Vargas A, Morett E, Iturriaga G. Insights on the evolution of trehalose biosynthesis. Bmc Evolutionary Biology. 6: 109. PMID 17178000 DOI: 10.1186/1471-2148-6-109 |
0.383 |
|
| 2006 |
Huerta AM, Francino MP, Morett E, Collado-Vides J. Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes. Plos Genetics. 2: e185. PMID 17096598 DOI: 10.1371/Journal.Pgen.0020185 |
0.421 |
|
| 2006 |
Aguilar-DÃaz H, Bobes RJ, Carrero JC, Camacho-Carranza R, Cervantes C, Cevallos MA, Dávila G, RodrÃguez-Dorantes M, Escobedo G, Fernández JL, Fragoso G, Gaytán P, Garciarubio A, González VM, González L, ... ... Morett E, et al. The genome project of Taenia solium. Parasitology International. 55: S127-30. PMID 16337432 DOI: 10.1016/J.Parint.2005.11.020 |
0.325 |
|
| 2004 |
Morett E, Garciarrubio AG. Shuffled: a software suite that assists the analysis of recombinant products resulting from DNA shuffling. Biotechniques. 37: 354, 356, 358. PMID 15470887 DOI: 10.2144/04373Bm03 |
0.34 |
|
| 2004 |
Bordes P, Wigneshweraraj SR, Chaney M, Dago AE, Morett E, Buck M. Communication between Esigma(54) , promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation. Molecular Microbiology. 54: 489-506. PMID 15469519 DOI: 10.1111/J.1365-2958.2004.04280.X |
0.407 |
|
| 2004 |
Ciria R, Abreu-Goodger C, Morett E, Merino E. GeConT: gene context analysis. Bioinformatics (Oxford, England). 20: 2307-8. PMID 15073003 DOI: 10.1093/Bioinformatics/Bth216 |
0.382 |
|
| 2003 |
Morett E, Korbel JO, Rajan E, Saab-Rincon G, Olvera L, Olvera M, Schmidt S, Snel B, Bork P. Systematic discovery of analogous enzymes in thiamin biosynthesis. Nature Biotechnology. 21: 790-5. PMID 12794638 DOI: 10.1038/Nbt834 |
0.501 |
|
| 2002 |
Morett E, Korbel JO, Rajan E, Saab-Rincon G, Olveral L, Olveral M, Schmidt S, Snel B, Bork P. Discovery of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation Genome Informatics. 13: 365-366. DOI: 10.11234/Gi1990.13.365 |
0.536 |
|
| 2001 |
Chaney M, Grande R, Wigneshweraraj SR, Cannon W, Casaz P, Gallegos MT, Schumacher J, Jones S, Elderkin S, Dago AE, Morett E, Buck M. Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes & Development. 15: 2282-94. PMID 11544185 DOI: 10.1101/Gad.205501 |
0.381 |
|
| 2000 |
Juarez K, Flores H, Dávila S, Olvera L, González V, Morett E. Reciprocal domain evolution within a transactivator in a restricted sequence space. Proceedings of the National Academy of Sciences of the United States of America. 97: 3314-8. PMID 10716734 DOI: 10.1073/Pnas.97.7.3314 |
0.369 |
|
| 1999 |
Grande RA, Valderrama B, Morett E. Suppression analysis of positive control mutants of NifA reveals two overlapping promoters for Klebsiella pneumoniae rpoN. Journal of Molecular Biology. 294: 291-8. PMID 10610758 DOI: 10.1006/Jmbi.1999.3232 |
0.446 |
|
| 1999 |
Barrios H, Valderrama B, Morett E. Compilation and analysis of sigma(54)-dependent promoter sequences. Nucleic Acids Research. 27: 4305-13. PMID 10536136 DOI: 10.1093/Nar/27.22.4305 |
0.397 |
|
| 1999 |
Morett E, Bork P. A novel transactivation domain in parkin. Trends in Biochemical Sciences. 24: 229-31. PMID 10366851 DOI: 10.1016/S0968-0004(99)01381-X |
0.404 |
|
| 1998 |
Morett E, Bork P. Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC. Febs Letters. 433: 108-12. PMID 9738943 DOI: 10.1016/S0014-5793(98)00888-6 |
0.531 |
|
| 1998 |
González V, Olvera L, Soberón X, Morett E. In vivo studies on the positive control function of NifA: a conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation. Molecular Microbiology. 28: 55-67. PMID 9593296 DOI: 10.1046/J.1365-2958.1998.00772.X |
0.459 |
|
| 1998 |
Barrios H, Grande R, Olvera L, Morett E. In vivo genomic footprinting analysis reveals that the complex Bradyrhizobium japonicum fixRnifA promoter region is differently occupied by two distinct RNA polymerase holoenzymes. Proceedings of the National Academy of Sciences of the United States of America. 95: 1014-9. PMID 9448277 DOI: 10.1073/Pnas.95.3.1014 |
0.45 |
|
| 1997 |
Osuna J, Soberón X, Morett E. A proposed architecture for the central domain of the bacterial enhancer-binding proteins based on secondary structure prediction and fold recognition. Protein Science : a Publication of the Protein Society. 6: 543-55. PMID 9070437 DOI: 10.1002/Pro.5560060304 |
0.441 |
|
| 1996 |
Valderrama B, Dávalos A, Girard L, Morett E, Mora J. Regulatory proteins and cis-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes. Journal of Bacteriology. 178: 3119-26. PMID 8655489 DOI: 10.1128/Jb.178.11.3119-3126.1996 |
0.473 |
|
| 1995 |
Barrios H, Fischer HM, Hennecke H, Morett E. Overlapping promoters for two different RNA polymerase holoenzymes control Bradyrhizobium japonicum nifA expression. Journal of Bacteriology. 177: 1760-5. PMID 7896698 DOI: 10.1128/Jb.177.7.1760-1765.1995 |
0.417 |
|
| 1993 |
Morett E, Segovia L. The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. Journal of Bacteriology. 175: 6067-74. PMID 8407777 DOI: 10.1128/Jb.175.19.6067-6074.1993 |
0.327 |
|
| 1991 |
Morett E, Fischer HM, Hennecke H. Influence of oxygen on DNA binding, positive control, and stability of the Bradyrhizobium japonicum NifA regulatory protein. Journal of Bacteriology. 173: 3478-87. PMID 2045367 DOI: 10.1128/Jb.173.11.3478-3487.1991 |
0.44 |
|
| 1990 |
Morett E, Kreutzer R, Cannon W, Buck M. The influence of the Klebsiella pneumoniae regulatory gene nifL upon the transcriptional activator protein NifA. Molecular Microbiology. 4: 1253-8. PMID 2280685 DOI: 10.1111/J.1365-2958.1990.Tb00704.X |
0.455 |
|
| 1990 |
Cannon WV, Kreutzer R, Kent HM, Morett E, Buck M. Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites. Nucleic Acids Research. 18: 1693-701. PMID 2186362 DOI: 10.1093/Nar/18.7.1693 |
0.42 |
|
| 1989 |
Morett E, Buck M. In vivo studies on the interaction of RNA polymerase-sigma 54 with the Klebsiella pneumoniae and Rhizobium meliloti nifH promoters. The role of NifA in the formation of an open promoter complex. Journal of Molecular Biology. 210: 65-77. PMID 2685331 DOI: 10.1016/0022-2836(89)90291-X |
0.431 |
|
| 1988 |
Romero D, Singleton PW, Segovia L, Morett E, Bohlool BB, Palacios R, Dávila G. Effect of Naturally Occurring nif Reiterations on Symbiotic Effectiveness in Rhizobium phaseoli. Applied and Environmental Microbiology. 54: 848-850. PMID 16347593 DOI: 10.1128/Aem.54.3.848-850.1988 |
0.319 |
|
| 1988 |
Morett E, Cannon W, Buck M. The DNA-binding domain of the transcriptional activator protein NifA resides in its carboxy terminus, recognises the upstream activator sequences of nif promoters and can be separated from the positive control function of NifA. Nucleic Acids Research. 16: 11469-88. PMID 3062575 DOI: 10.1093/Nar/16.24.11469 |
0.427 |
|
| 1988 |
Morett E, Buck M. NifA-dependent in vivo protection demonstrates that the upstream activator sequence of nif promoters is a protein binding site. Proceedings of the National Academy of Sciences of the United States of America. 85: 9401-5. PMID 2849102 DOI: 10.1073/Pnas.85.24.9401 |
0.437 |
|
| 1988 |
Morett E, Moreno S, Espin G. Transcription analysis of the three nifH genes of Rhizobium phaseoli with gene fusions Mgg Molecular & General Genetics. 213: 499-504. DOI: 10.1007/Bf00339622 |
0.419 |
|
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