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Yudong Cai - Publications

Affiliations: 
Combinatorics and Geometry  CAS-MPG Partner Institute for Computational Bioloy, Shanghai, Shanghai Shi, China 
Website:
http://www.picb.ac.cn/daoshi9ch.htm
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Year Citation  Score
2023 Huang F, Fu M, Li J, Chen L, Feng K, Huang T, Cai YD. Analysis and prediction of protein stability based on interaction network, gene ontology, and KEGG pathway enrichment scores. Biochimica Et Biophysica Acta. Proteins and Proteomics. 1871: 140889. PMID 36610583 DOI: 10.1016/j.bbapap.2023.140889  0.305
2022 Yang L, Zhang YH, Huang F, Li Z, Huang T, Cai YD. Identification of protein-protein interaction associated functions based on gene ontology and KEGG pathway. Frontiers in Genetics. 13: 1011659. PMID 36171880 DOI: 10.3389/fgene.2022.1011659  0.324
2022 Zhang YH, Ding S, Chen L, Huang T, Cai YD. Subcellular Localization Prediction of Human Proteins Using Multifeature Selection Methods. Biomed Research International. 2022: 3288527. PMID 36132086 DOI: 10.1155/2022/3288527  0.328
2022 Li H, Zhang S, Chen L, Pan X, Li Z, Huang T, Cai YD. Identifying Functions of Proteins in Mice With Functional Embedding Features. Frontiers in Genetics. 13: 909040. PMID 35651937 DOI: 10.3389/fgene.2022.909040  0.306
2021 Chen L, Li Z, Zeng T, Zhang YH, Zhang S, Huang T, Cai YD. Predicting Human Protein Subcellular Locations by Using a Combination of Network and Function Features. Frontiers in Genetics. 12: 783128. PMID 34804131 DOI: 10.3389/fgene.2021.783128  0.319
2021 Chen L, Li Z, Zeng T, Zhang YH, Li H, Huang T, Cai YD. Predicting gene phenotype by multi-label multi-class model based on essential functional features. Molecular Genetics and Genomics : Mgg. PMID 33914130 DOI: 10.1007/s00438-021-01789-8  0.322
2020 Pan X, Zeng T, Zhang YH, Chen L, Feng K, Huang T, Cai YD. Investigation and Prediction of Human Interactome Based on Quantitative Features. Frontiers in Bioengineering and Biotechnology. 8: 730. PMID 32766217 DOI: 10.3389/Fbioe.2020.00730  0.412
2020 Zhang Y, Zeng T, Chen L, Ding S, Huang T, Cai YD. Identification of COVID-19 Infection-Related Human Genes Based on a Random Walk Model in a Virus-Human Protein Interaction Network. Biomed Research International. 2020: 4256301. PMID 32685484 DOI: 10.1155/2020/4256301  0.334
2020 Li M, Pan X, Zeng T, Zhang YH, Feng K, Chen L, Huang T, Cai YD. Alternative Polyadenylation Modification Patterns Reveal Essential Posttranscription Regulatory Mechanisms of Tumorigenesis in Multiple Tumor Types. Biomed Research International. 2020: 6384120. PMID 32626751 DOI: 10.1155/2020/6384120  0.383
2020 Pan X, Lu L, Cai YD. Predicting protein subcellular location with network embedding and enrichment features. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140477. PMID 32593761 DOI: 10.1016/J.Bbapap.2020.140477  0.438
2020 Yuan F, Pan X, Zeng T, Zhang YH, Chen L, Gan Z, Huang T, Cai YD. Identifying Cell-Type Specific Genes and Expression Rules Based on Single-Cell Transcriptomic Atlas Data. Frontiers in Bioengineering and Biotechnology. 8: 350. PMID 32411685 DOI: 10.3389/Fbioe.2020.00350  0.323
2020 Chen L, Pan X, Guo W, Gan Z, Zhang YH, Niu Z, Huang T, Cai YD. Investigating the gene expression profiles of cells in seven embryonic stages with machine learning algorithms. Genomics. PMID 32045671 DOI: 10.1016/J.Ygeno.2020.02.004  0.348
2020 Zhang Y, Zeng T, Pan X, Guo W, Gan Z, Zhang Y, Huang T, Cai Y. Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study Ieee Access. 8: 489-501. DOI: 10.1109/Access.2019.2961402  0.316
2019 Chen L, Pan X, Zeng T, Zhang YH, Zhang Y, Huang T, Cai YD. Immunosignature Screening for Multiple Cancer Subtypes Based on Expression Rule. Frontiers in Bioengineering and Biotechnology. 7: 370. PMID 31850330 DOI: 10.3389/Fbioe.2019.00370  0.35
2019 Pan X, Zeng T, Yuan F, Zhang YH, Chen L, Zhu L, Wan S, Huang T, Cai YD. Screening of Methylation Signature and Gene Functions Associated With the Subtypes of Isocitrate Dehydrogenase-Mutation Gliomas. Frontiers in Bioengineering and Biotechnology. 7: 339. PMID 31803734 DOI: 10.3389/Fbioe.2019.00339  0.361
2019 Xu Y, Zhang YH, Li J, Pan X, Huang T, Cai YD. New computational tool based on machine-learning algorithms for the identification of rhinovirus infection-related genes. Combinatorial Chemistry & High Throughput Screening. PMID 31782358 DOI: 10.2174/1386207322666191129114741  0.304
2019 Chen L, Pan X, Zhang YH, Hu X, Feng K, Huang T, Cai YD. Primary Tumor Site Specificity is Preserved in Patient-Derived Tumor Xenograft Models. Frontiers in Genetics. 10: 738. PMID 31456818 DOI: 10.3389/Fgene.2019.00738  0.307
2019 Chen L, Zhang YH, Huang G, Pan X, Huang T, Cai YD. Inferring novel genes related to oral cancer with a network embedding method and one-class learning algorithms. Gene Therapy. PMID 31455874 DOI: 10.1038/S41434-019-0099-Y  0.379
2019 Yuan F, Pan X, Chen L, Zhang YH, Huang T, Cai YD. Analysis of Protein-Protein Functional Associations by Using Gene Ontology and KEGG Pathway. Biomed Research International. 2019: 4963289. PMID 31396531 DOI: 10.1155/2019/4963289  0.376
2019 Li J, Lu L, Zhang YH, Xu Y, Liu M, Feng K, Chen L, Kong X, Huang T, Cai YD. Identification of leukemia stem cell expression signatures through Monte Carlo feature selection strategy and support vector machine. Cancer Gene Therapy. PMID 31138902 DOI: 10.1038/S41417-019-0105-Y  0.373
2019 Pan X, Chen L, Feng KY, Hu XH, Zhang YH, Kong XY, Huang T, Cai YD. Analysis of Expression Pattern of snoRNAs in Different Cancer Types with Machine Learning Algorithms. International Journal of Molecular Sciences. 20. PMID 31052553 DOI: 10.3390/Ijms20092185  0.361
2019 Chen L, Pan X, Zhang YH, Liu M, Huang T, Cai YD. Classification of Widely and Rarely Expressed Genes with Recurrent Neural Network. Computational and Structural Biotechnology Journal. 17: 49-60. PMID 30595815 DOI: 10.1016/J.Csbj.2018.12.002  0.344
2019 Chen L, Pan X, Zeng T, Zhang Y, Huang T, Cai Y. Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells Ieee Access. 7: 128570-128578. DOI: 10.1109/Access.2019.2939556  0.348
2018 Wang S, Li J, Sun X, Zhang YH, Huang T, Cai Y. Computational method for identifying malonylation sites by using random forest algorithm. Combinatorial Chemistry & High Throughput Screening. PMID 30588879 DOI: 10.2174/1386207322666181227144318  0.366
2018 Chen L, Pan X, Zhang YH, Kong X, Huang T, Cai YD. Tissue differences revealed by gene expression profiles of various cell lines. Journal of Cellular Biochemistry. PMID 30368905 DOI: 10.1002/Jcb.27977  0.308
2018 Cai YD, Zhang S, Zhang YH, Pan X, Feng K, Chen L, Huang T, Kong X. Identification of the Gene Expression Rules That Define the Subtypes in Glioma. Journal of Clinical Medicine. 7. PMID 30322114 DOI: 10.3390/Jcm7100350  0.364
2018 Li J, Chen L, Zhang YH, Kong X, Huang T, Cai YD. A Computational Method for Classifying Different Human Tissues with Quantitatively Tissue-Specific Expressed Genes. Genes. 9. PMID 30205473 DOI: 10.3390/Genes9090449  0.302
2018 Li J, Lu L, Zhang YH, Liu M, Chen L, Huang T, Cai YD. Identification of synthetic lethality based on a functional network by using machine learning algorithms. Journal of Cellular Biochemistry. PMID 30125975 DOI: 10.1002/Jcb.27395  0.44
2018 Chen L, Zhang YH, Zhang Z, Huang T, Cai YD. Inferring Novel Tumor Suppressor Genes with a Protein-Protein Interaction Network and Network Diffusion Algorithms. Molecular Therapy. Methods & Clinical Development. 10: 57-67. PMID 30069494 DOI: 10.1016/J.Omtm.2018.06.007  0.357
2018 Chen L, Wang S, Zhang YH, Wei L, Xu X, Huang T, Cai YD. Prediction of nitrated tyrosine residues in protein sequences by extreme learning machine and feature selection methods. Combinatorial Chemistry & High Throughput Screening. PMID 29848272 DOI: 10.2174/1386207321666180531091619  0.371
2018 Wang D, Li JR, Zhang YH, Chen L, Huang T, Cai YD. Identification of Differentially Expressed Genes between Original Breast Cancer and Xenograft Using Machine Learning Algorithms. Genes. 9. PMID 29534550 DOI: 10.3390/Genes9030155  0.345
2017 Wang S, Cai Y. Identification of the functional alteration signatures across different cancer types with support vector machine and feature analysis. Biochimica Et Biophysica Acta. PMID 29277326 DOI: 10.1016/J.Bbadis.2017.12.026  0.347
2017 Wang S, Li J, Yuan F, Huang T, Cai YD. Computational method for distinguishing lysine acetylation, sumoylation, and ubiquitination using the random forest algorithm with a feature selection procedure. Combinatorial Chemistry & High Throughput Screening. PMID 29256343 DOI: 10.2174/1386207321666171218114056  0.343
2017 Zhang YH, Huang T, Chen L, Xu Y, Hu Y, Hu LD, Cai Y, Kong X. Identifying and analyzing different cancer subtypes using RNA-seq data of blood platelets. Oncotarget. 8: 87494-87511. PMID 29152097 DOI: 10.18632/Oncotarget.20903  0.349
2017 Chen L, Li J, Zhang YH, Feng K, Wang S, Zhang Y, Huang T, Kong X, Cai YD. Identification of gene expression signatures across different types of neural stem cells with the Monte-Carlo feature selection method. Journal of Cellular Biochemistry. PMID 29130544 DOI: 10.1002/Jcb.26507  0.328
2017 Chen L, Pan H, Zhang YH, Feng K, Kong X, Huang T, Cai YD. Network-Based Method for Identifying Co- Regeneration Genes in Bone, Dentin, Nerve and Vessel Tissues. Genes. 8. PMID 28974058 DOI: 10.3390/Genes8100252  0.306
2017 Li J, Chen L, Wang S, Zhang Y, Kong X, Huang T, Cai YD. A computational method using the random walk with restart algorithm for identifying novel epigenetic factors. Molecular Genetics and Genomics : Mgg. PMID 28932904 DOI: 10.1007/S00438-017-1374-5  0.342
2017 Chen L, Zhang YH, Huang G, Pan X, Wang S, Huang T, Cai YD. Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection. Molecular Genetics and Genomics : Mgg. PMID 28913654 DOI: 10.1007/S00438-017-1372-7  0.33
2017 Chen L, Zhang YH, Wang S, Zhang Y, Huang T, Cai YD. Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways. Plos One. 12: e0184129. PMID 28873455 DOI: 10.1371/Journal.Pone.0184129  0.358
2017 Chen L, Lu J, Huang T, Cai YD. A computational method for the identification of candidate drugs for non-small cell lung cancer. Plos One. 12: e0183411. PMID 28820893 DOI: 10.1371/Journal.Pone.0183411  0.314
2017 Chen L, Yang J, Xing Z, Yuan F, Shu Y, Zhang Y, Kong X, Huang T, Li H, Cai YD. An integrated method for the identification of novel genes related to oral cancer. Plos One. 12: e0175185. PMID 28384236 DOI: 10.1371/Journal.Pone.0175185  0.353
2017 Wang S, Zhang YH, Zhang N, Chen L, Huang T, Cai YD. Recognizing and predicting thioether bridges formed by lanthionine and β-methyllanthionine in lantibiotics using a random forest approach with feature selection. Combinatorial Chemistry & High Throughput Screening. PMID 28294058 DOI: 10.2174/1386207320666170310115754  0.399
2017 Yuan F, Zhang YH, Kong XY, Cai YD. Identification of Candidate Genes Related to Inflammatory Bowel Disease Using Minimum Redundancy Maximum Relevance, Incremental Feature Selection, and the Shortest-Path Approach. Biomed Research International. 2017: 5741948. PMID 28293637 DOI: 10.1155/2017/5741948  0.335
2017 Gao J, Tao XW, Zhao J, Feng YM, Cai YD, Zhang N. Computational prediction of protein epsilon lysine acetylation sites based on a feature selection method. Combinatorial Chemistry & High Throughput Screening. PMID 28292250 DOI: 10.2174/1386207320666170314093216  0.395
2017 Cai YD, Zhang Q, Zhang YH, Chen L, Huang T. Identification of genes associated with breast cancer metastasis to bone on a protein-protein interaction network with a shortest path algorithm. Journal of Proteome Research. PMID 28076954 DOI: 10.1021/Acs.Jproteome.6B00950  0.361
2017 Sun X, Li J, Gu L, Wang S, Zhang Y, Huang T, Cai Y. Identifying the Characteristics of the Hypusination Sites Using SMOTE and SVM Algorithm with Feature Selection Current Proteomics. 15: 111-118. DOI: 10.2174/1570164614666171109120615  0.307
2017 Chen L, Wang S, Zhang Y, Li J, Xing Z, Yang J, Huang T, Cai Y. Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy Ieee Access. 5: 26582-26590. DOI: 10.1109/Access.2017.2775703  0.377
2016 Zhang Q, Sun X, Feng K, Wang S, Zhang YH, Wang S, Lu L, Cai YD. Predicting citrullination sites in protein sequences using mRMR method and random forest algorithm. Combinatorial Chemistry & High Throughput Screening. PMID 28029071 DOI: 10.2174/1386207319666161227124350  0.427
2016 Wang S, Zhang YH, Huang G, Chen L, Cai YD. Analysis and prediction of myristoylation sites using the mRMR method, the IFS method and an extreme learning machine algorithm. Combinatorial Chemistry & High Throughput Screening. PMID 28000567 DOI: 10.2174/1386207319666161220114424  0.422
2016 Yin H, Wang S, Zhang YH, Cai YD, Liu H. Analysis of Important Gene Ontology Terms and Biological Pathways Related to Pancreatic Cancer. Biomed Research International. 2016: 7861274. PMID 27957501 DOI: 10.1155/2016/7861274  0.334
2016 Huang G, Chu C, Huang T, Kong X, Zhang Y, Zhang N, Cai YD. Exploring Mouse Protein Function via Multiple Approaches. Plos One. 11: e0166580. PMID 27846315 DOI: 10.1371/Journal.Pone.0166580  0.409
2016 Chen L, Wang B, Wang S, Yang J, Hu J, Xie Z, Wang Y, Huang T, Cai YD, Xie Z. OPMSP: A computational method integrating protein interaction and sequence information for the identification of novel putative oncogenes. Protein and Peptide Letters. PMID 27774893 DOI: 10.2174/0929866523666161021165506  0.433
2016 Chen L, Zhang YH, Zheng M, Huang T, Cai YD. Identification of compound-protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds. Molecular Genetics and Genomics : Mgg. PMID 27530612 DOI: 10.1007/S00438-016-1240-X  0.379
2016 Chen L, Chu C, Zhang YH, Zhu C, Kong X, Huang T, Cai YD. Analysis of Gene Expression Profiles in the Human Brain Stem, Cerebellum and Cerebral Cortex. Plos One. 11: e0159395. PMID 27434030 DOI: 10.1371/Journal.Pone.0159395  0.31
2016 Zhu L, Zhang YH, Su F, Chen L, Huang T, Cai YD. A Shortest-Path-Based Method for the Analysis and Prediction of Fruit-Related Genes in Arabidopsis thaliana. Plos One. 11: e0159519. PMID 27434024 DOI: 10.1371/Journal.Pone.0159519  0.373
2016 Chen L, Huang T, Zhang YH, Jiang Y, Zheng M, Cai YD. Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma using protein-protein interactions and a shortest path approach. Scientific Reports. 6: 29849. PMID 27412431 DOI: 10.1038/Srep29849  0.355
2016 Chen L, Zhang YH, Huang T, Cai YD. Gene expression profiling gut microbiota in different races of humans. Scientific Reports. 6: 23075. PMID 26975620 DOI: 10.1038/Srep23075  0.338
2016 Wang S, Zhang YH, Lu J, Cui W, Hu J, Cai YD. Analysis and Identification of Aptamer-Compound Interactions with a Maximum Relevance Minimum Redundancy and Nearest Neighbor Algorithm. Biomed Research International. 2016: 8351204. PMID 26955638 DOI: 10.1155/2016/8351204  0.305
2016 Liu L, Chen L, Zhang YH, Wei L, Cheng S, Kong X, Zheng M, Huang T, Cai YD. Analysis and prediction of drug-drug interaction by minimum redundancy maximum relevance and incremental feature selection. Journal of Biomolecular Structure & Dynamics. 1-452. PMID 26750516 DOI: 10.1080/07391102.2016.1138142  0.339
2016 Chen L, Zhang YH, Huang T, Cai YD. Identifying novel protein phenotype annotations by hybridizing protein-protein interactions and protein sequence similarities. Molecular Genetics and Genomics : Mgg. PMID 26728152 DOI: 10.1007/S00438-015-1157-9  0.416
2016 Li B, Zhang Y, Jin M, Huang T, Cai Y. Prediction of protein-peptide interaction with nearest neighbor algorithm Current Bioinformatics. 11: 1-1. DOI: 10.2174/1574893611666160711162006  0.321
2016 Wang SP, Zhang Q, Lu J, Cai Y. Analysis and Prediction of Nitrated Tyrosine Sites with the mRMR Method and Support Vector Machine Algorithm Current Bioinformatics. 13: 3-13. DOI: 10.2174/1574893611666160608075753  0.329
2016 Zhou Y, Huang T, Huang G, Zhang N, Kong X, Cai Y. Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method Neurocomputing. 217: 53-62. DOI: 10.1016/J.Neucom.2015.10.148  0.382
2015 Wang B, Yuan F, Kong X, Hu LD, Cai YD. Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network. Computational and Mathematical Methods in Medicine. 2015: 715639. PMID 26543496 DOI: 10.1155/2015/715639  0.349
2015 Huang T, Wang M, Cai YD. Analysis of the preferences for splice codes across tissues. Protein & Cell. PMID 26507841 DOI: 10.1007/S13238-015-0226-5  0.315
2015 Yuan F, Zhou Y, Wang M, Yang J, Wu K, Lu C, Kong X, Cai YD. Identifying New Candidate Genes and Chemicals Related to Prostate Cancer Using a Hybrid Network and Shortest Path Approach. Computational and Mathematical Methods in Medicine. 2015: 462363. PMID 26504486 DOI: 10.1155/2015/462363  0.306
2015 Chen L, Yang J, Huang T, Kong X, Lu L, Cai YD. Mining for novel tumor suppressor genes using a shortest path approach. Journal of Biomolecular Structure & Dynamics. 1-96. PMID 26209080 DOI: 10.1080/07391102.2015.1042915  0.365
2015 Gao YF, Yuan F, Liu J, Li LP, He YC, Gao RJ, Cai YD, Jiang Y. Identification of New Candidate Genes and Chemicals Related to Esophageal Cancer Using a Hybrid Interaction Network of Chemicals and Proteins. Plos One. 10: e0129474. PMID 26058041 DOI: 10.1371/Journal.Pone.0129474  0.373
2015 Cai Y, Huang T, Chen L, Niu B. Application of systems biology and bioinformatics methods in biochemistry and biomedicine 2014. Biomed Research International. 2015: 568607. PMID 25961026 DOI: 10.1155/2015/568607  0.38
2015 Chen L, Chu C, Lu J, Kong X, Huang T, Cai YD. Gene Ontology and KEGG Pathway Enrichment Analysis of a Drug Target-Based Classification System. Plos One. 10: e0126492. PMID 25951454 DOI: 10.1371/Journal.Pone.0126492  0.357
2015 Chen L, Chu C, Huang T, Kong X, Cai YD. Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models. Amino Acids. 47: 1485-93. PMID 25894890 DOI: 10.1007/S00726-015-1974-5  0.307
2015 Zhang PW, Chen L, Huang T, Zhang N, Kong XY, Cai YD. Classifying ten types of major cancers based on reverse phase protein array profiles. Plos One. 10: e0123147. PMID 25822500 DOI: 10.1371/Journal.Pone.0123147  0.397
2015 Huang G, Lu Y, Lu C, Zheng M, Cai YD. Prediction of drug indications based on chemical interactions and chemical similarities. Biomed Research International. 2015: 584546. PMID 25821813 DOI: 10.1155/2015/584546  0.303
2015 Chen L, Chu C, Kong X, Huang G, Huang T, Cai YD. A hybrid computational method for the discovery of novel reproduction-related genes. Plos One. 10: e0117090. PMID 25768094 DOI: 10.1371/Journal.Pone.0117090  0.381
2015 Chen L, Chu C, Kong X, Huang T, Cai YD. Discovery of new candidate genes related to brain development using protein interaction information. Plos One. 10: e0118003. PMID 25635857 DOI: 10.1371/Journal.Pone.0118003  0.338
2015 Zhou Y, Zhang N, Li BQ, Huang T, Cai YD, Kong XY. A method to distinguish between lysine acetylation and lysine ubiquitination with feature selection and analysis. Journal of Biomolecular Structure & Dynamics. 1-12. PMID 25616595 DOI: 10.1080/07391102.2014.1001793  0.392
2015 Li B, Huang G, Huang T, Feng K, Liu L, Cai Y. Prediction of Colorectal Cancer Related Genes Based on Gene Ontology Current Bioinformatics. 10: 22-30. DOI: 10.2174/157489361001150309131058  0.333
2014 Shu Y, Zhang N, Kong X, Huang T, Cai YD. Predicting A-to-I RNA editing by feature selection and random forest. Plos One. 9: e110607. PMID 25338210 DOI: 10.1371/Journal.Pone.0110607  0.354
2014 Zhang N, Huang T, Cai YD. Discriminating between deleterious and neutral non-frameshifting indels based on protein interaction networks and hybrid properties Molecular Genetics and Genomics. 290: 343-352. PMID 25248637 DOI: 10.1007/S00438-014-0922-5  0.408
2014 Zhang N, Zhou Y, Huang T, Zhang YC, Li BQ, Chen L, Cai YD. Discriminating between lysine sumoylation and lysine acetylation using mRMR feature selection and analysis. Plos One. 9: e107464. PMID 25222670 DOI: 10.1371/Journal.Pone.0107464  0.42
2014 Yang J, Chen L, Kong X, Huang T, Cai YD. Analysis of tumor suppressor genes based on gene ontology and the KEGG pathway. Plos One. 9: e107202. PMID 25207935 DOI: 10.1371/Journal.Pone.0107202  0.377
2014 Huang G, Lu L, Feng K, Zhao J, Zhang Y, Xu Y, Zhang N, Li BQ, Huang W, Cai YD. Prediction of S-nitrosylation modification sites based on kernel sparse representation classification and mRMR algorithm. Biomed Research International. 2014: 438341. PMID 25184139 DOI: 10.1155/2014/438341  0.412
2014 Zhang J, Xing Z, Ma M, Wang N, Cai YD, Chen L, Xu X. Gene ontology and KEGG enrichment analyses of genes related to age-related macular degeneration. Biomed Research International. 2014: 450386. PMID 25165703 DOI: 10.1155/2014/450386  0.35
2014 Cai Y, Huang T, Chen L, Gao S, Zhang N. Novel computational methods and tools in biomedicine and biopharmacy. Computational and Mathematical Methods in Medicine. 2014: 127515. PMID 24995036 DOI: 10.1155/2014/127515  0.344
2014 Cai Y, González JV, Liu Z, Huang T. Computational systems biology methods in molecular biology, chemistry biology, molecular biomedicine, and biopharmacy. Biomed Research International. 2014: 746814. PMID 24812630 DOI: 10.1155/2014/746814  0.423
2014 Lu J, Huang G, Li HP, Feng KY, Chen L, Zheng MY, Cai YD. Prediction of cancer drugs by chemical-chemical interactions. Plos One. 9: e87791. PMID 24498372 DOI: 10.1371/Journal.Pone.0087791  0.345
2014 Chen L, Lu J, Zhang N, Huang T, Cai YD. A hybrid method for prediction and repositioning of drug Anatomical Therapeutic Chemical classes Molecular Biosystems. 10: 868-877. PMID 24492783 DOI: 10.1039/C3Mb70490D  0.336
2014 Li BQ, Zhang YC, Huang GH, Cui WR, Zhang N, Cai YD. Prediction of aptamer-target interacting pairs with pseudo-amino acid composition. Plos One. 9: e86729. PMID 24466214 DOI: 10.1371/Journal.Pone.0086729  0.37
2014 Li BQ, Feng KY, Ding J, Cai YD. Predicting DNA-binding sites of proteins based on sequential and 3D structural information. Molecular Genetics and Genomics : Mgg. 289: 489-99. PMID 24448651 DOI: 10.1007/S00438-014-0812-X  0.381
2013 Zhang J, Jiang M, Yuan F, Feng KY, Cai YD, Xu X, Chen L. Identification of age-related macular degeneration related genes by applying shortest path algorithm in protein-protein interaction network. Biomed Research International. 2013: 523415. PMID 24455700 DOI: 10.1155/2013/523415  0.354
2013 Zhang T, Jiang M, Chen L, Niu B, Cai Y. Prediction of gene phenotypes based on GO and KEGG pathway enrichment scores. Biomed Research International. 2013: 870795. PMID 24312912 DOI: 10.1155/2013/870795  0.419
2013 Chen L, Li BQ, Zheng MY, Zhang J, Feng KY, Cai YD. Prediction of effective drug combinations by chemical interaction, protein interaction and target enrichment of KEGG pathways. Biomed Research International. 2013: 723780. PMID 24083237 DOI: 10.1155/2013/723780  0.348
2013 Chen L, Huang T, Zhang J, Zheng MY, Feng KY, Cai YD, Chou KC. Predicting drugs side effects based on chemical-chemical interactions and protein-chemical interactions Biomed Research International. 2013. PMID 24078917 DOI: 10.1155/2013/485034  0.342
2013 Huang G, Zhou Y, Zhang Y, Li B, Zhang N, Cai Y. Prediction of carbamylated lysine sites based on the one-class k-nearest neighbor method. Molecular Biosystems. 9: 2729-2740. PMID 24056952 DOI: 10.1039/C3Mb70195F  0.378
2013 Jiang M, Chen Y, Zhang Y, Chen L, Zhang N, Huang T, Cai YD, Kong X. Identification of hepatocellular carcinoma related genes with k-th shortest paths in a protein-protein interaction network Molecular Biosystems. 9: 2720-2728. PMID 24056857 DOI: 10.1039/C3Mb70089E  0.305
2013 Huang T, Cai YD. An Information-Theoretic Machine Learning Approach to Expression QTL Analysis Plos One. 8. PMID 23825689 DOI: 10.1371/Journal.Pone.0067899  0.326
2013 Jiang Y, Li BQ, Zhang Y, Feng YM, Gao YF, Zhang N, Cai YD. Prediction and Analysis of Post-Translational Pyruvoyl Residue Modification Sites from Internal Serines in Proteins. Plos One. 8: e66678. PMID 23805260 DOI: 10.1371/Journal.Pone.0066678  0.446
2013 Cui W, Niu S, Zheng L, Hu L, Huang T, Gu L, Feng K, Zhang N, Cai Y, Li Y. Prediction of protein amidation sites by feature selection and analysis. Molecular Genetics and Genomics : Mgg. 288: 391-400. PMID 23793388 DOI: 10.1007/S00438-013-0760-X  0.42
2013 Li BQ, You J, Chen L, Zhang J, Zhang N, Li HP, Huang T, Kong XY, Cai YD. Identification of lung-cancer-related genes with the shortest path approach in a protein-protein interaction network Biomed Research International. 2013. PMID 23762832 DOI: 10.1155/2013/267375  0.344
2013 Li BQ, Niu B, Chen L, Wei ZJ, Huang T, Jiang M, Lu J, Zheng MY, Kong XY, Cai YD. Identifying Chemicals with Potential Therapy of HIV Based on Protein-Protein and Protein-Chemical Interaction Network Plos One. 8. PMID 23762317 DOI: 10.1371/Journal.Pone.0065207  0.309
2013 Zhao TH, Jiang M, Huang T, Li BQ, Zhang N, Li HP, Cai YD. A novel method of predicting protein disordered regions based on sequence features. Biomed Research International. 2013: 414327. PMID 23710446 DOI: 10.1155/2013/414327  0.413
2013 Jiang Y, Huang T, Chen L, Gao YF, Cai Y, Chou KC. Signal propagation in protein interaction network during colorectal cancer progression. Biomed Research International. 2013: 287019. PMID 23586028 DOI: 10.1155/2013/287019  0.3
2013 Cui W, Chen L, Huang T, Gao Q, Jiang M, Zhang N, Zheng L, Feng K, Cai Y, Wang H. Computationally identifying virulence factors based on KEGG pathways. Molecular Biosystems. 9: 1447-52. PMID 23519087 DOI: 10.1039/C3Mb70024K  0.348
2013 Chen L, Lu J, Zhang J, Feng KR, Zheng MY, Cai YD. Predicting chemical toxicity effects based on chemical-chemical interactions. Plos One. 8: e56517. PMID 23457578 DOI: 10.1371/Journal.Pone.0056517  0.321
2013 Gao Y, Li B, Cai Y, Feng K, Li Z, Jiang Y. Prediction of active sites of enzymes by maximum relevance minimum redundancy (mRMR) feature selection Molecular Biosystems. 9: 61-69. PMID 23117653 DOI: 10.1039/C2Mb25327E  0.375
2013 Liu L, Lu WC, Cai YD, Feng KY, Peng C, Zhu Y. Prediction of protein-protein interactions based on feature selection and data balancing. Protein and Peptide Letters. 20: 336-45. PMID 22591478 DOI: 10.2174/0929866511320030012  0.433
2013 Niu S, Huang T, Feng KY, He Z, Cui W, Gu L, Li H, Cai YD, Li Y. Inter- and intra-chain disulfide bond prediction based on optimal feature selection. Protein and Peptide Letters. 20: 324-35. PMID 22591475 DOI: 10.2174/0929866511320030011  0.348
2013 Huang T, He ZS, Cui WR, Cai YD, Shi XH, Hu LL, Chou KC. A sequence-based approach for predicting protein disordered regions. Protein and Peptide Letters. 20: 243-8. PMID 22591473 DOI: 10.2174/0929866511320030002  0.417
2013 Chen L, Zeng W, Cai Y, Huang T. Prediction of Metabolic Pathway Using Graph Property, Chemical Functional Group and Chemical Structural Set Current Bioinformatics. 8: 200-207. DOI: 10.2174/1574893611308020008  0.349
2012 Gao YF, Chen L, Cai YD, Feng KY, Huang T, Jiang Y. Predicting Metabolic Pathways of Small Molecules and Enzymes Based on Interaction Information of Chemicals and Proteins Plos One. 7. PMID 23029334 DOI: 10.1371/Journal.Pone.0045944  0.324
2012 Li B, Cai Y, Feng K, Zhao G. Prediction of Protein Cleavage Site with Feature Selection by Random Forest Plos One. 7. PMID 23029276 DOI: 10.1371/Journal.Pone.0045854  0.43
2012 Li BQ, Feng KY, Chen L, Huang T, Cai YD. Prediction of protein-protein interaction sites by random forest algorithm with mRMR and IFS. Plos One. 7: e43927. PMID 22937126 DOI: 10.1371/Journal.Pone.0043927  0.432
2012 Zhang N, Li BQ, Gao S, Ruan JS, Cai YD. Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method. Molecular Biosystems. 8: 2946-55. PMID 22918520 DOI: 10.1039/C2Mb25185J  0.42
2012 Zheng LL, Li YX, Ding J, Guo XK, Feng KY, Wang YJ, Hu LL, Cai YD, Hao P, Chou KC. A comparison of computational methods for identifying virulence factors. Plos One. 7: e42517. PMID 22880014 DOI: 10.1371/Journal.Pone.0042517  0.379
2012 Hu L, Cui W, He Z, Shi X, Feng K, Ma B, Cai YD. Cooperativity among short amyloid stretches in long amyloidogenic sequences. Plos One. 7: e39369. PMID 22761773 DOI: 10.1371/Journal.Pone.0039369  0.328
2012 Li BQ, Hu LL, Chen L, Feng KY, Cai YD, Chou KC. Prediction of protein domain with mRMR feature selection and analysis. Plos One. 7: e39308. PMID 22720092 DOI: 10.1371/Journal.Pone.0039308  0.426
2012 Li BQ, Zhang J, Huang T, Zhang L, Cai YD. Identification of retinoblastoma related genes with shortest path in a protein-protein interaction network. Biochimie. 94: 1910-7. PMID 22627383 DOI: 10.1016/J.Biochi.2012.05.005  0.345
2012 Niu S, Hu LL, Zheng LL, Huang T, Feng KY, Cai YD, Li HP, Li YX, Chou KC. Predicting protein oxidation sites with feature selection and analysis approach. Journal of Biomolecular Structure & Dynamics. 29: 650-8. PMID 22545996 DOI: 10.1080/07391102.2011.672629  0.382
2012 Hu LL, Feng KY, Cai YD, Chou KC. Using protein-protein interaction network information to predict the subcellular locations of proteins in budding yeast. Protein and Peptide Letters. 19: 644-51. PMID 22519536 DOI: 10.2174/092986612800494066  0.399
2012 Chen L, Zeng WM, Cai YD, Feng KY, Chou KC. Predicting Anatomical Therapeutic Chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities. Plos One. 7: e35254. PMID 22514724 DOI: 10.1371/Journal.Pone.0035254  0.31
2012 Li BQ, Huang T, Liu L, Cai YD, Chou KC. Identification of colorectal cancer related genes with mrmr and shortest path in protein-protein interaction network Plos One. 7. PMID 22496748 DOI: 10.1371/Journal.Pone.0033393  0.377
2012 Huang T, Zhang J, Xu ZP, Hu LL, Chen L, Shao JL, Zhang L, Kong XY, Cai YD, Chou KC. Deciphering the effects of gene deletion on yeast longevity using network and machine learning approaches. Biochimie. 94: 1017-25. PMID 22239951 DOI: 10.1016/J.Biochi.2011.12.024  0.379
2012 Li BQ, Hu LL, Niu S, Cai YD, Chou KC. Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches. Journal of Proteomics. 75: 1654-65. PMID 22178444 DOI: 10.1016/J.Jprot.2011.12.003  0.373
2012 Chen L, Cai YD, Shi XH, Huang T. Analysis of metabolic pathway using hybrid properties Protein and Peptide Letters. 19: 99-107. PMID 21919854 DOI: 10.2174/092986612798472857  0.316
2012 Huang T, Cai YD, Chen L, Hu LL, Kong XY, Li YX, Chou KC. Selection of reprogramming factors of induced pluripotent stem cells based on the protein interaction network and functional profiles. Protein and Peptide Letters. 19: 113-9. PMID 21919852 DOI: 10.2174/092986612798472884  0.334
2012 Cai Y, Huang T, Hu L, Shi X, Xie L, Li Y. Prediction of lysine ubiquitination with mRMR feature selection and analysis. Amino Acids. 42: 1387-95. PMID 21267749 DOI: 10.1007/S00726-011-0835-0  0.421
2011 Zheng LL, Niu S, Hao P, Feng K, Cai YD, Li Y. Prediction of protein modification sites of pyrrolidone carboxylic acid using mRMR feature selection and analysis. Plos One. 6: e28221. PMID 22174779 DOI: 10.1371/Journal.Pone.0028221  0.41
2011 Huang T, Chen L, Cai YD, Chou KC. Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property Plos One. 6. PMID 21980418 DOI: 10.1371/Journal.Pone.0025297  0.368
2011 Huang T, Niu S, Xu Z, Huang Y, Kong X, Cai YD, Chou KC. Predicting transcriptional activity of multiple site p53 mutants based on hybrid properties. Plos One. 6: e22940. PMID 21857971 DOI: 10.1371/Journal.Pone.0022940  0.376
2011 Hu LL, Huang T, Cai YD, Chou KC. Prediction of body fluids where proteins are secreted into based on protein interaction network Plos One. 6. PMID 21829572 DOI: 10.1371/Journal.Pone.0022989  0.391
2011 Hu LL, Li Z, Wang K, Niu S, Shi XH, Cai YD, Li HP. Prediction and analysis of protein methylarginine and methyllysine based on Multisequence features. Biopolymers. 95: 763-71. PMID 21544797 DOI: 10.1002/Bip.21645  0.399
2011 Wang P, Hu L, Liu G, Jiang N, Chen X, Xu J, Zheng W, Li L, Tan M, Chen Z, Song H, Cai YD, Chou KC. Prediction of antimicrobial peptides based on sequence alignment and feature selection methods. Plos One. 6: e18476. PMID 21533231 DOI: 10.1371/Journal.Pone.0018476  0.375
2011 Hu L, Huang T, Liu XJ, Cai YD. Predicting protein phenotypes based on protein-protein interaction network. Plos One. 6: e17668. PMID 21423698 DOI: 10.1371/Journal.Pone.0017668  0.374
2011 Cai Y, He J, Lu L. Predicting sumoylation site by feature selection method. Journal of Biomolecular Structure & Dynamics. 28: 797-804. PMID 21294590 DOI: 10.1080/07391102.2011.10508607  0.4
2011 Hu L, Huang T, Shi X, Lu WC, Cai YD, Chou KC. Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties. Plos One. 6: e14556. PMID 21283518 DOI: 10.1371/Journal.Pone.0014556  0.414
2011 Huang T, Wan S, Xu Z, Zheng Y, Feng KY, Li HP, Kong X, Cai YD. Analysis and prediction of translation rate based on sequence and functional features of the mRNA. Plos One. 6: e16036. PMID 21253596 DOI: 10.1371/Journal.Pone.0016036  0.373
2011 Hu LL, Wan SB, Niu S, Shi XH, Li HP, Cai YD, Chou KC. Prediction and analysis of protein palmitoylation sites. Biochimie. 93: 489-96. PMID 21075167 DOI: 10.1016/J.Biochi.2010.10.022  0.424
2011 Cai Y, He J, Lu L. Prediction of mucin-type O-glycosylation sites by a two-staged strategy. Molecular Diversity. 15: 427-33. PMID 20652405 DOI: 10.1007/S11030-010-9240-Y  0.405
2011 Wan S, Hu L, Niu S, Wang K, Cai Y, Lu W, Chou K. Identification of Multiple Subcellular Locations for Proteins in Budding Yeast Current Bioinformatics. 6: 71-80. DOI: 10.2174/157489311795222374  0.332
2011 Huang T, Chen L, Liu X, Cai Y. Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles Neurocomputing. 74: 3677-3681. DOI: 10.1016/J.Neucom.2011.07.019  0.331
2010 Hu LL, Niu S, Huang T, Wang K, Shi XH, Cai YD. Prediction and analysis of protein hydroxyproline and hydroxylysine. Plos One. 5: e15917. PMID 21209839 DOI: 10.1371/Journal.Pone.0015917  0.39
2010 Chen L, Huang T, Shi XH, Cai YD, Chou KC. Analysis of protein pathway networks using hybrid properties Molecules. 15: 8177-8192. PMID 21076385 DOI: 10.3390/Molecules15118177  0.388
2010 Chen L, He ZS, Huang T, Cai YD. Using compound similarity and functional domain composition for prediction of drug-target interaction networks Medicinal Chemistry. 6: 388-395. PMID 21054276 DOI: 10.2174/157340610793563983  0.377
2010 Niu S, Huang T, Feng K, Cai Y, Li Y. Prediction of tyrosine sulfation with mRMR feature selection and analysis. Journal of Proteome Research. 9: 6490-7. PMID 20973568 DOI: 10.1021/Pr1007152  0.413
2010 Cai YD, Huang T, Feng KY, Hu L, Xie L. A unified 35-gene signature for both subtype classification and survival prediction in diffuse large B-cell Lymphomas Plos One. 5: 1-8. PMID 20856936 DOI: 10.1371/Journal.Pone.0012726  0.36
2010 Cai Y, He Z, Shi X, Kong X, Gu L, Xie L. A novel sequence-based method of predicting protein DNA-binding residues, using a machine learning approach. Molecules and Cells. 30: 99-105. PMID 20706794 DOI: 10.1007/S10059-010-0093-0  0.366
2010 Huang T, Wang P, Ye ZQ, Xu H, He Z, Feng KY, Hu L, Cui W, Wang K, Dong X, Xie L, Kong X, Cai YD, Li Y. Prediction of deleterious non-synonymous SNPs based on protein interaction network and hybrid properties. Plos One. 5: e11900. PMID 20689580 DOI: 10.1371/Journal.Pone.0011900  0.339
2010 Huang T, Shi XH, Wang P, He Z, Feng KY, Hu L, Kong X, Li YX, Cai YD, Chou KC. Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks Plos One. 5. PMID 20532046 DOI: 10.1371/Journal.Pone.0010972  0.405
2010 Yang XY, Shi XH, Meng X, Li XL, Lin K, Qian ZL, Feng KY, Kong XY, Cai YD. Classification of transcription factors using protein primary structure. Protein and Peptide Letters. 17: 899-908. PMID 20394581 DOI: 10.2174/092986610791306670  0.372
2010 He Z, Zhang J, Shi XH, Hu LL, Kong X, Cai YD, Chou KC. Predicting drug-target interaction networks based on functional groups and biological features. Plos One. 5: e9603. PMID 20300175 DOI: 10.1371/Journal.Pone.0009603  0.33
2010 Chen L, Qian Z, Fen K, Cai Y. Prediction of interactiveness between small molecules and enzymes by combining gene ontology and compound similarity. Journal of Computational Chemistry. 31: 1766-76. PMID 20033913 DOI: 10.1002/Jcc.21467  0.344
2010 Cai Y, He J, Li X, Feng K, Lu L, Feng K, Kong X, Lu W. Predicting protein subcellular locations with feature selection and analysis. Protein and Peptide Letters. 17: 464-72. PMID 19995336 DOI: 10.2174/092986610790963654  0.434
2010 Yuan Y, Shi X, Li X, Lu W, Cai Y, Gu L, Liu L, Li M, Kong X, Xing M. Prediction of interactiveness of proteins and nucleic acids based on feature selections. Molecular Diversity. 14: 627-33. PMID 19816781 DOI: 10.1007/S11030-009-9198-9  0.424
2010 Cai Y, Lu L, Chen L, He J. Predicting subcellular location of proteins using integrated-algorithm method Molecular Diversity. 14: 551-558. PMID 19662505 DOI: 10.1007/S11030-009-9182-4  0.396
2010 Lu L, Qian Z, Shi X, Li H, Cai YD, Li Y. A knowledge-based method to predict the cooperative relationship between transcription factors. Molecular Diversity. 14: 815-9. PMID 19590970 DOI: 10.1007/S11030-009-9177-1  0.386
2010 Lu L, Shi XH, Li SJ, Xie ZQ, Feng YL, Lu WC, Li YX, Li H, Cai YD. Protein sumoylation sites prediction based on two-stage feature selection. Molecular Diversity. 14: 81-6. PMID 19472067 DOI: 10.1007/S11030-009-9149-5  0.413
2010 Lei L, Feng K, He Z, Cai Y. A novel voting system for the identification of eukaryotic genome promoters Journal of Biomedical Science and Engineering. 3: 719-726. DOI: 10.4236/Jbise.2010.37096  0.357
2010 Lu L, Lin K, Qian Z, Li H, Cai Y, Li Y. Predicting DNA methylation status using word composition Journal of Biomedical Science and Engineering. 3: 672-676. DOI: 10.4236/Jbise.2010.37091  0.3
2010 Cai Y, He Z, Hu L, Li B, Zhou Y, Xiao H, Wang Z, Feng K, Lu L, Feng K, Li H. Gene finding by integrating gene finders Journal of Biomedical Science and Engineering. 3: 1061-1068. DOI: 10.4236/Jbise.2010.311137  0.366
2009 Huang T, Cui W, Hu L, Feng K, Li YX, Cai YD. Prediction of pharmacological and xenobiotic responses to drugs based on time course gene expression profiles Plos One. 4. PMID 19956587 DOI: 10.1371/Journal.Pone.0008126  0.369
2009 Chen L, Shi X, Kong X, Zeng Z, Cai YD. Identifying protein complexes using hybrid properties. Journal of Proteome Research. 8: 5212-8. PMID 19764809 DOI: 10.1021/Pr900554A  0.392
2009 Lu J, Niu B, Liu L, Lu WC, Cai YD. Prediction of small molecules' metabolic pathways based on functional group composition. Protein and Peptide Letters. 16: 969-76. PMID 19689424 DOI: 10.2174/092986609788923374  0.302
2009 Chen L, Lu L, Feng K, Li W, Song J, Zheng L, Yuan Y, Zeng Z, Feng K, Lu W, Cai Y. Multiple classifier integration for the prediction of protein structural classes. Journal of Computational Chemistry. 30: 2248-54. PMID 19274708 DOI: 10.1002/Jcc.21230  0.382
2009 Niu B, Jin Y, Lu L, Fen K, Gu L, He Z, Lu W, Li Y, Cai Y. Prediction of interaction between small molecule and enzyme using AdaBoost. Molecular Diversity. 13: 313-20. PMID 19219560 DOI: 10.1007/S11030-009-9116-1  0.331
2009 Liu L, Cai Y, Lu W, Feng K, Peng C, Niu B. Prediction of protein-protein interactions based on PseAA composition and hybrid feature selection. Biochemical and Biophysical Research Communications. 380: 318-22. PMID 19171120 DOI: 10.1016/J.Bbrc.2009.01.077  0.407
2009 Cai Y, He J, Li X, Lu L, Yang X, Feng K, Lu W, Kong X. A novel computational approach to predict transcription factor DNA binding preference. Journal of Proteome Research. 8: 999-1003. PMID 19099508 DOI: 10.1021/Pr800717Y  0.354
2009 Lu L, Niu B, Zhao J, Liu L, Lu WC, Liu XJ, Li YX, Cai YD. GalNAc-transferase specificity prediction based on feature selection method. Peptides. 30: 359-64. PMID 18955094 DOI: 10.1016/J.Peptides.2008.09.020  0.352
2009 Niu B, Lu L, Liu L, Gu TH, Feng KY, Lu WC, Cai YD. HIV-1 protease cleavage site prediction based on amino acid property. Journal of Computational Chemistry. 30: 33-9. PMID 18496789 DOI: 10.1002/Jcc.21024  0.323
2009 Liu P, Cai Y, Qian Z, Ni S, Dong L, Lu C, Shu J, Zeng Z, Lu W. FastCluster: a graph theory based algorithm for removing redundant sequences Journal of Biomedical Science and Engineering. 2: 621-625. DOI: 10.4236/Jbise.2009.28090  0.321
2008 Li W, Lin K, Feng K, Cai Y. Prediction of protein structural classes using hybrid properties. Molecular Diversity. 12: 171-9. PMID 18953662 DOI: 10.1007/S11030-008-9093-9  0.413
2008 Xu X, Yu D, Fang W, Cheng Y, Qian Z, Lu W, Cai Y, Feng K. Prediction of peptidase category based on functional domain composition. Journal of Proteome Research. 7: 4521-4. PMID 18763822 DOI: 10.1021/Pr800292W  0.402
2008 Niu B, Jin YH, Feng KY, Liu L, Lu WC, Cai YD, Li GZ. Predicting membrane protein types with bragging learner. Protein and Peptide Letters. 15: 590-4. PMID 18680454 DOI: 10.2174/092986608784966921  0.409
2008 Cai Y, Lu L. Predicting N-terminal acetylation based on feature selection method Biochemical and Biophysical Research Communications. 372: 862-865. PMID 18533108 DOI: 10.1016/J.Bbrc.2008.05.143  0.328
2008 Niu B, Jin YH, Feng KY, Lu WC, Cai YD, Li GZ. Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins. Molecular Diversity. 12: 41-5. PMID 18506593 DOI: 10.1007/S11030-008-9073-0  0.41
2008 Jin YH, Niu B, Feng KY, Lu WC, Cai YD, Li GZ. Predicting subcellular localization with AdaBoost Learner. Protein and Peptide Letters. 15: 286-9. PMID 18336359 DOI: 10.2174/092986608783744234  0.408
2008 Jia P, Qian Z, Feng K, Lu W, Li Y, Cai Y. Prediction of membrane protein types in a hybrid space. Journal of Proteome Research. 7: 1131-7. PMID 18260610 DOI: 10.1021/Pr700715C  0.401
2007 Li S, Liu B, Cai Y, Li Y. Predicting protein N-glycosylation by combining functional domain and secretion information. Journal of Biomolecular Structure & Dynamics. 25: 49-54. PMID 17676937 DOI: 10.1080/07391102.2007.10507154  0.395
2007 Qian Z, Lu L, Liu X, Cai Y, Li Y. An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization Bioinformatics. 23: 2449-2454. PMID 17623704 DOI: 10.1093/Bioinformatics/Btm348  0.338
2007 Niu B, Lu W, Yang S, Cai Y, Li G. Support vector machine for SAR/QSAR of phenethyl-amines. Acta Pharmacologica Sinica. 28: 1075-1086. PMID 17588345 DOI: 10.1111/J.1745-7254.2007.00573.X  0.343
2007 Lu L, Qian Z, Cai Y, Li Y. Software note: ECS: An automatic enzyme classifier based on functional domain composition Computational Biology and Chemistry. 31: 226-232. PMID 17500036 DOI: 10.1016/J.Compbiolchem.2007.03.008  0.327
2007 Liu B, Li S, Wang Y, Lu L, Li Y, Cai Y. Predicting the protein SUMO modification sites based on Properties Sequential Forward Selection (PSFS). Biochemical and Biophysical Research Communications. 358: 136-9. PMID 17470363 DOI: 10.1016/J.Bbrc.2007.04.097  0.417
2007 Jia P, Qian Z, Zeng Z, Cai Y, Li Y. Prediction of subcellular protein localization based on functional domain composition. Biochemical and Biophysical Research Communications. 357: 366-70. PMID 17428441 DOI: 10.1016/J.Bbrc.2007.03.139  0.409
2006 Qian Z, Cai Y, Li Y. Automatic transcription factor classifier based on functional domain composition. Biochemical and Biophysical Research Communications. 347: 141-144. PMID 16808896 DOI: 10.1016/J.Bbrc.2006.06.060  0.328
2006 Niu B, Cai YD, Lu WC, Li GZ, Chou KC. Predicting protein structural class with AdaBoost Learner. Protein and Peptide Letters. 13: 489-92. PMID 16800803 DOI: 10.2174/092986606776819619  0.385
2006 Li S, Liu B, Zeng R, Cai Y, Li Y. Predicting O-glycosylation sites in mammalian proteins by using SVMs. Computational Biology and Chemistry. 30: 203-8. PMID 16731044 DOI: 10.1016/J.Compbiolchem.2006.02.002  0.388
2006 Jia P, Shi T, Cai Y, Li Y. Demonstration of two novel methods for predicting functional siRNA efficiency. Bmc Bioinformatics. 7: 271. PMID 16729898 DOI: 10.1186/1471-2105-7-271  0.376
2006 Zhang GQ, Cao ZW, Luo QM, Cai YD, Li YX. Operon prediction based on SVM. Computational Biology and Chemistry. 30: 233-40. PMID 16716751 DOI: 10.1016/J.Compbiolchem.2006.03.002  0.395
2006 Chou KC, Cai YD. Predicting protein-protein interactions from sequences in a hybridization space. Journal of Proteome Research. 5: 316-22. PMID 16457597 DOI: 10.1021/Pr050331G  0.418
2006 Zhou G, Cai Y. Predicting protease types by hybridizing gene ontology and pseudo amino acid composition Proteins. 63: 681-684. PMID 16456852 DOI: 10.1002/Prot.20898  0.398
2006 Yu X, Cao J, Cai Y, Shi T, Li Y. Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines. Journal of Theoretical Biology. 240: 175-84. PMID 16274699 DOI: 10.1016/J.Jtbi.2005.09.018  0.403
2006 Chou KC, Cai YD. Prediction of membrane protein types by incorporating amphipathic effects. Journal of Chemical Information and Modeling. 45: 407-13. PMID 15807506 DOI: 10.1021/Ci049686V  0.304
2005 Chou KC, Cai YD. Prediction of protease types in a hybridization space. Biochemical and Biophysical Research Communications. 339: 1015-20. PMID 16325146 DOI: 10.1016/J.Bbrc.2005.10.196  0.394
2005 Shi TL, Li YX, Cai YD, Chou KC. Computational methods for protein-protein interaction and their application. Current Protein & Peptide Science. 6: 443-9. PMID 16248796 DOI: 10.2174/138920305774329313  0.405
2005 Cai YD, Feng KY, Lu WC, Chou KC. Using LogitBoost classifier to predict protein structural classes. Journal of Theoretical Biology. 238: 172-6. PMID 16043193 DOI: 10.1016/J.Jtbi.2005.05.034  0.407
2005 Cai YD, Chou KC. Predicting membrane protein type by functional domain composition and pseudo-amino acid composition. Journal of Theoretical Biology. 238: 395-400. PMID 16040052 DOI: 10.1016/J.Jtbi.2005.05.035  0.355
2005 Feng KY, Cai YD, Chou KC. Boosting classifier for predicting protein domain structural class. Biochemical and Biophysical Research Communications. 334: 213-7. PMID 15993842 DOI: 10.1016/J.Bbrc.2005.06.075  0.405
2005 Cai YD, Chou KC. Predicting enzyme subclass by functional domain composition and pseudo amino acid composition. Journal of Proteome Research. 4: 967-71. PMID 15952744 DOI: 10.1021/Pr0500399  0.355
2005 Cai YD, Zhou GP, Chou KC. Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition. Journal of Theoretical Biology. 234: 145-9. PMID 15721043 DOI: 10.1016/J.Jtbi.2004.11.017  0.353
2005 Cai YD, Chou KC. Using functional domain composition to predict enzyme family classes. Journal of Proteome Research. 4: 109-11. PMID 15707365 DOI: 10.1021/Pr049835P  0.403
2005 Chou KC, Cai YD. Using GO-PseAA predictor to identify membrane proteins and their types. Biochemical and Biophysical Research Communications. 327: 845-7. PMID 15649422 DOI: 10.1016/J.Bbrc.2004.12.069  0.343
2005 Chou KC, Cai YD. Using GO-PseAA predictor to predict enzyme sub-class. Biochemical and Biophysical Research Communications. 325: 506-9. PMID 15530421 DOI: 10.1016/J.Bbrc.2004.10.058  0.326
2005 Chou KC, Cai YD. Predicting enzyme family class in a hybridization space. Protein Science : a Publication of the Protein Society. 13: 2857-63. PMID 15498934 DOI: 10.1110/Ps.04981104  0.347
2004 Chou KC, Cai YD. Predicting protein localization in budding yeast. Bioinformatics (Oxford, England). 21: 944-50. PMID 15513989 DOI: 10.1093/Bioinformatics/Bti104  0.354
2004 Cai YD, Chou KC. Predicting 22 protein localizations in budding yeast. Biochemical and Biophysical Research Communications. 323: 425-8. PMID 15369769 DOI: 10.1016/J.Bbrc.2004.08.113  0.41
2004 Chou KC, Cai YD. Predicting protein structural class by functional domain composition. Biochemical and Biophysical Research Communications. 321: 1007-9. PMID 15358128 DOI: 10.1016/J.Bbrc.2004.07.059  0.349
2004 Dobson PD, Cai YD, Stapley BJ, Doig AJ. Prediction of protein function in the absence of significant sequence similarity. Current Medicinal Chemistry. 11: 2135-42. PMID 15279553 DOI: 10.2174/0929867043364702  0.31
2004 Chou KC, Cai YD. Prediction of protein subcellular locations by GO-FunD-PseAA predictor. Biochemical and Biophysical Research Communications. 320: 1236-9. PMID 15249222 DOI: 10.1016/J.Bbrc.2004.06.073  0.414
2004 Cai YD, Zhou GP, Jen CH, Lin SL, Chou KC. Identify catalytic triads of serine hydrolases by support vector machines. Journal of Theoretical Biology. 228: 551-7. PMID 15178202 DOI: 10.1016/J.Jtbi.2004.02.019  0.318
2004 Chou KC, Cai YD. Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition. Journal of Cellular Biochemistry. 91: 1197-203. PMID 15048874 DOI: 10.1002/Jcb.10790  0.389
2004 Chou KC, Cai YD. A novel approach to predict active sites of enzyme molecules. Proteins. 55: 77-82. PMID 14997541 DOI: 10.1002/Prot.10622  0.312
2004 Cai YD, Chou KC. Predicting subcellular localization of proteins in a hybridization space. Bioinformatics (Oxford, England). 20: 1151-6. PMID 14764553 DOI: 10.1093/Bioinformatics/Bth054  0.404
2004 Cai YD, Ricardo PW, Jen CH, Chou KC. Application of SVM to predict membrane protein types. Journal of Theoretical Biology. 226: 373-6. PMID 14759643 DOI: 10.1016/J.Jtbi.2003.08.015  0.403
2004 Chou KC, Cai YD. Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition. Journal of Cellular Biochemistry. 90: 1250-60. PMID 14635197 DOI: 10.1002/Jcb.10719  0.387
2004 Chou KC, Cai YD. A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology. Biochemical and Biophysical Research Communications. 311: 743-7. PMID 14623335 DOI: 10.1016/J.Bbrc.2003.10.062  0.392
2004 Chou KC, Cai YD. Predicting protein quaternary structure by pseudo amino acid composition. Proteins. 53: 282-9. PMID 14517979 DOI: 10.1002/Prot.10500  0.387
2004 Cai YD, Feng KY, Li YX, Chou KC. Support vector machine for predicting alpha-turn types. Peptides. 24: 629-30. PMID 12860209 DOI: 10.1016/S0196-9781(03)00100-1  0.346
2004 Cai YD, Zhou GP, Chou KC. Support vector machines for predicting membrane protein types by using functional domain composition. Biophysical Journal. 84: 3257-63. PMID 12719255 DOI: 10.1016/S0006-3495(03)70050-2  0.36
2003 Cai Y, Lin SL. Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence. Biochimica Et Biophysica Acta. 1648: 127-133. PMID 12758155 DOI: 10.1016/S1570-9639(03)00112-2  0.428
2003 Cai YD, Chou KC. Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition. Biochemical and Biophysical Research Communications. 305: 407-11. PMID 12745090 DOI: 10.1016/S0006-291X(03)00775-7  0.354
2003 Cai YD, Liu XJ, Chou KC. Prediction of protein secondary structure content by artificial neural network. Journal of Computational Chemistry. 24: 727-31. PMID 12666164 DOI: 10.1002/Jcc.10222  0.351
2003 Cai Y, Liu X, Xu X, Chou K. Support vector machines for prediction of protein domain structural class. Journal of Theoretical Biology. 221: 115-120. PMID 12634048 DOI: 10.1006/Jtbi.2003.3179  0.377
2003 Cai YD, Lin SL, Chou KC. Support vector machines for prediction of protein signal sequences and their cleavage sites. Peptides. 24: 159-61. PMID 12576098 DOI: 10.1016/S0196-9781(02)00289-9  0.391
2003 Cai YD, Liu XJ, Xu XB, Chou KC. Support Vector Machines for predicting HIV protease cleavage sites in protein. Journal of Computational Chemistry. 23: 267-74. PMID 11924738 DOI: 10.1002/Jcc.10017  0.312
2002 Chou K, Cai Y. Using functional domain composition and support vector machines for prediction of protein subcellular location. Journal of Biological Chemistry. 277: 45765-45769. PMID 12186861 DOI: 10.1074/Jbc.M204161200  0.412
2002 Cai YD, Liu XJ, Xu XB, Chou KC. Artificial neural network method for predicting protein secondary structure content. Computers & Chemistry. 26: 347-50. PMID 12139417 DOI: 10.1016/S0097-8485(01)00125-5  0.332
2002 Cai YD, Liu XJ, Xu XB, Chou KC. Prediction of protein structural classes by support vector machines. Computers & Chemistry. 26: 293-6. PMID 11868916 DOI: 10.1016/S0097-8485(01)00113-9  0.375
2002 Cai YD, Liu XJ, Xu XB, Chou KC. Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect. Journal of Cellular Biochemistry. 84: 343-8. PMID 11787063 DOI: 10.1002/Jcb.10030  0.393
2002 Cai YD, Liu XJ, Chou KC. Artificial neural network model for predicting protein subcellular location. Computers & Chemistry. 26: 179-82. PMID 11778941 DOI: 10.1016/S0097-8485(01)00106-1  0.416
2001 Cai Y, Liu X, Xu X, Zhou G. Support Vector Machines for predicting protein structural class Bmc Bioinformatics. 2: 3-3. PMID 11483157 DOI: 10.1186/1471-2105-2-3  0.367
2001 Cai YD. Is it a paradox or misinterpretation? Proteins: Structure, Function and Genetics. 43: 336-338. PMID 11288184 DOI: 10.1002/Prot.1045  0.383
2001 Cai YD, Liu XJ, Chou KC. Artificial neural network model for predicting membrane protein types. Journal of Biomolecular Structure & Dynamics. 18: 607-10. PMID 11245255 DOI: 10.1080/07391102.2001.10506692  0.328
2000 Cai Y, Liu X, Xu X, Chou K. Support vector machines for prediction of protein subcellular location. Molecular Cell Biology Research Communications. 4: 230-233. PMID 11409917 DOI: 10.1006/Mcbr.2001.0285  0.387
2000 Cai Y, Chou K. Using neural networks for prediction of subcellular location of prokaryotic and eukaryotic proteins. Molecular Cell Biology Research Communications. 4: 172-173. PMID 11281732 DOI: 10.1006/Mcbr.2001.0269  0.366
2000 Cai Y, Zhou G. Prediction of protein structural classes by neural network. Biochimie. 82: 783-785. PMID 11018296 DOI: 10.1016/S0300-9084(00)01161-5  0.345
1999 Cai Y, Li Y, Chou K. Classification and prediction of β–turn types by neural network Advances in Engineering Software. 30: 347-352. DOI: 10.1016/S0965-9978(98)00090-8  0.348
1998 Cai Y, Bork P. Homology-based gene prediction using neural nets. Analytical Biochemistry. 265: 269-74. PMID 9882402 DOI: 10.1006/Abio.1998.2876  0.554
1998 Cai Y, Chou K. Artificial neural network model for predicting HIV protease cleavage sites in protein Advances in Engineering Software. 29: 119-128. DOI: 10.1016/S0965-9978(98)00046-5  0.307
1997 Ponting CP, Cai YD, Bork P. The breast cancer gene product TSG101: a regulator of ubiquitination? Journal of Molecular Medicine (Berlin, Germany). 75: 467-9. PMID 9253709  0.404
Low-probability matches (unlikely to be authored by this person)
2017 Zhang YH, Xing Z, Liu C, Wang S, Huang T, Cai YD, Kong X. Identification of the core regulators of the HLA I-peptide binding process. Scientific Reports. 7: 42768. PMID 28211542 DOI: 10.1038/Srep42768  0.299
1997 Cai Y, Yu H, Chou K. Artificial neural network method for predicting the specificity of GalNAc-transferase. Journal of Protein Chemistry. 16: 689-700. PMID 9330227 DOI: 10.1023/A:1026306520790  0.299
2018 Chen L, Pan X, Hu X, Zhang YH, Wang S, Huang T, Cai YD. Gene expression differences among different MSI statuses in colorectal cancer. International Journal of Cancer. PMID 29696646 DOI: 10.1002/Ijc.31554  0.299
2018 Yuan F, Lu L, Zhang Y, Wang S, Cai YD. Data mining of the cancer-related lncRNAs GO terms and KEGG pathways by using mRMR method. Mathematical Biosciences. PMID 30086268 DOI: 10.1016/J.Mbs.2018.08.001  0.299
1996 Cai Y, Chou K. Artificial neural network model for predicting the specificity of GalNAc-transferase. Analytical Biochemistry. 243: 284-285. PMID 8954564 DOI: 10.1006/Abio.1996.0520  0.298
2008 Cai YD, Qian Z, Lu L, Feng KY, Meng X, Niu B, Zhao GD, Lu WC. Prediction of compounds' biological function (metabolic pathways) based on functional group composition. Molecular Diversity. 12: 131-7. PMID 18704735 DOI: 10.1007/S11030-008-9085-9  0.297
2015 Chen L, Chu C, Lu J, Kong X, Huang T, Cai YD. A computational method for the identification of new candidate carcinogenic and non-carcinogenic chemicals. Molecular Biosystems. PMID 26194467 DOI: 10.1039/C5Mb00276A  0.297
1993 Cai Y, Gan J, Yao L. Application of the neural network approach in the comprehensive prediction of earthquakes Acta Seismologica Sinica. 6: 775-779. DOI: 10.1007/Bf02650417  0.296
2006 Qian Z, Cai Y, Li Y. A novel computational method to predict transcription factor DNA binding preference. Biochemical and Biophysical Research Communications. 348: 1034-1037. PMID 16899225 DOI: 10.1016/J.Bbrc.2006.07.149  0.294
2010 Lin K, Qian Z, Lu L, Lu L, Lai L, Gu J, Zeng Z, Li H, Cai Y. Predicting miRNA's target from primary structure by the nearest neighbor algorithm. Molecular Diversity. 14: 719-29. PMID 20041294 DOI: 10.1007/S11030-009-9216-Y  0.294
2011 Hu LL, Chen C, Huang T, Cai YD, Chou KC. Predicting biological functions of compounds based on chemical-chemical interactions. Plos One. 6: e29491. PMID 22220213 DOI: 10.1371/Journal.Pone.0029491  0.294
2014 Zhang N, Jiang M, Huang T, Cai YD. Identification of influenza A/H7N9 virus infection-related human genes based on shortest paths in a virus-human protein interaction network Biomed Research International. 2014. PMID 24955349 DOI: 10.1155/2014/239462  0.294
2016 Zhang YH, Chu C, Wang S, Chen L, Lu J, Kong X, Huang T, Li H, Cai YD. The Use of Gene Ontology Term and KEGG Pathway Enrichment for Analysis of Drug Half-Life. Plos One. 11: e0165496. PMID 27780226 DOI: 10.1371/Journal.Pone.0165496  0.293
2000 Cai Y, Li Y, Chou K. Using neural networks for prediction of domain structural classes. Biochimica Et Biophysica Acta. 1476: 1-2. PMID 10606760 DOI: 10.1016/S0167-4838(99)00217-4  0.293
1995 Cai Y, Chen C. Artificial neural network method for discriminating coding regions of eukaryotic genes Bioinformatics. 11: 497-501. PMID 8590172 DOI: 10.1093/Bioinformatics/11.5.497  0.293
2017 Liu C, Zhang YH, Deng Q, Li Y, Huang T, Zhou S, Cai YD. Cancer-Related Triplets of mRNA-lncRNA-miRNA Revealed by Integrative Network in Uterine Corpus Endometrial Carcinoma. Biomed Research International. 2017: 3859582. PMID 28280730 DOI: 10.1155/2017/3859582  0.292
2015 Huang T, Yang J, Cai YD. Novel candidate key drivers in the integrative network of genes, microRNAs, methylations, and copy number variations in squamous cell lung carcinoma. Biomed Research International. 2015: 358125. PMID 25802847 DOI: 10.1155/2015/358125  0.291
2012 Huang T, Jiang M, Kong X, Cai YD. Dysfunctions associated with methylation, microrna expression and gene expression in lung cancer Plos One. 7. PMID 22912875 DOI: 10.1371/Journal.Pone.0043441  0.291
2002 Cai Y, Dodson CT, Doig AJ, Wolkenhauer O. Information-theoretic analysis of protein sequences shows that amino acids self-cluster. Journal of Theoretical Biology. 218: 409-18. PMID 12384045 DOI: 10.1016/S0022-5193(02)93088-2  0.291
2013 Li BQ, Huang T, Zhang J, Zhang N, Huang GH, Liu L, Cai YD. An Ensemble Prognostic Model for Colorectal Cancer Plos One. 8. PMID 23658834 DOI: 10.1371/Journal.Pone.0063494  0.29
2018 Lu J, Zhang YH, Wang S, Bi Y, Huang T, Luo X, Cai YD. Analysis of four types of leukemia using Gene Ontology term and Kyoto Encyclopedia of Genes and Genomes pathway enrichment scores. Combinatorial Chemistry & High Throughput Screening. PMID 30599106 DOI: 10.2174/1386207322666181231151900  0.29
2020 Guo W, Zeng T, Huang T, Cai Y. Disease Cluster Detection and Functional Characterization Ieee Access. 8: 141958-141966. DOI: 10.1109/Access.2020.3013666  0.289
2016 Zhang Q, Zhang PW, Cai YD. The Use of Protein-Protein Interactions for the Analysis of the Associations between PM2.5 and Some Diseases. Biomed Research International. 2016: 4895476. PMID 27243032 DOI: 10.1155/2016/4895476  0.289
2016 Lu J, Chen L, Yin J, Huang T, Bi Y, Kong X, Zheng M, Cai YD. Identification of new candidate drugs for lung cancer using chemical-chemical interactions, chemical-protein interactions and a K-means clustering algorithm. Journal of Biomolecular Structure & Dynamics. 1-12. PMID 26849843 DOI: 10.1080/07391102.2015.1060161  0.289
2009 Huang T, Cui W, He ZS, Hu L, Liu F, Wen T, Li Y, Cai Y. Functional association between influenza A (H1N1) virus and human. Biochemical and Biophysical Research Communications. 390: 1111-3. PMID 19716802 DOI: 10.1016/J.Bbrc.2009.08.131  0.289
2018 Chen L, Zhang YH, Pan X, Liu M, Wang S, Huang T, Cai YD. Tissue Expression Difference between mRNAs and lncRNAs. International Journal of Molecular Sciences. 19. PMID 30384456 DOI: 10.3390/Ijms19113416  0.288
2010 Yi X, Cai Y, He Z, Cui W, Kong X. Prediction of nucleosome positioning based on transcription factor binding sites. Plos One. 5. PMID 20824131 DOI: 10.1371/Journal.Pone.0012495  0.287
2006 Dong L, Yuan Y, Cai Y. Using Bagging classifier to predict protein domain structural class. Journal of Biomolecular Structure & Dynamics. 24: 239-42. PMID 17054381  0.286
2016 Huang T, Li B, Cai Y. The Integrative Network of Gene Expression, MicroRNA, Methylation and Copy Number Variation in Colon and Rectal Cancer Current Bioinformatics. 11: 59-65. DOI: 10.2174/1574893611666151119215823  0.286
2017 Chen L, Zhang YH, Lu G, Huang T, Cai YD. Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways. Artificial Intelligence in Medicine. 76: 27-36. PMID 28363286 DOI: 10.1016/J.Artmed.2017.02.001  0.285
2018 Pan X, Hu X, Zhang YH, Chen L, Zhu L, Wan S, Huang T, Cai YD. Identification of the copy number variant biomarkers for breast cancer subtypes. Molecular Genetics and Genomics : Mgg. PMID 30203254 DOI: 10.1007/S00438-018-1488-4  0.283
1996 Cai Y. Genetic programming for prediction of earthquake sequence type Acta Seismologica Sinica. 9: 53-57. DOI: 10.1007/Bf02650623  0.282
2021 Zhang YH, Zeng T, Chen L, Huang T, Cai YD. Determining protein-protein functional associations by functional rules based on gene ontology and KEGG pathway. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140621. PMID 33561576 DOI: 10.1016/j.bbapap.2021.140621  0.279
2013 Huang T, Wu W, Jin H, Cai Y. Gene Sets of Gene Ontology are More Stable Diagnostic Biomarkers than Genes in Oral Squamous Cell Carcinoma Current Bioinformatics. 8: 577-582. DOI: 10.2174/1574893611308050009  0.278
2020 Zheng Z, Wang X, Li M, Li Y, Yang Z, Wang X, Pan X, Gong M, Zhang Y, Guo Y, Wang Y, Liu J, Cai Y, Chen Q, Okpeku M, et al. The origin of domestication genes in goats. Science Advances. 6: eaaz5216. PMID 32671210 DOI: 10.1126/Sciadv.Aaz5216  0.276
2020 Pan X, Li H, Zeng T, Li Z, Chen L, Huang T, Cai YD. Identification of Protein Subcellular Localization With Network and Functional Embeddings. Frontiers in Genetics. 11: 626500. PMID 33584818 DOI: 10.3389/fgene.2020.626500  0.276
1999 Cai YD, Chou KC. Artificial neural network model for predicting alpha-turn types. Analytical Biochemistry. 268: 407-9. PMID 10075834 DOI: 10.1006/Abio.1998.2992  0.276
2004 Cai YD, Liu XJ, Li YX, Xu XB, Chou KC. Prediction of beta-turns with learning machines. Peptides. 24: 665-9. PMID 12895651 DOI: 10.1016/S0196-9781(03)00133-5  0.276
2019 Tian X, Li R, Fu W, Li Y, Wang X, Li M, Du D, Tang Q, Cai Y, Long Y, Zhao Y, Li M, Jiang Y. Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data. Science China. Life Sciences. PMID 31290097 DOI: 10.1007/S11427-019-9551-7  0.276
2011 Huang T, Zhang J, Xie L, Dong X, Zhang L, Cai YD, Li YX. Crosstissue coexpression network of aging. Omics : a Journal of Integrative Biology. 15: 665-71. PMID 21751870 DOI: 10.1089/Omi.2011.0034  0.275
2014 Chen L, Lu J, Huang T, Yin J, Wei L, Cai YD. Finding candidate drugs for hepatitis C based on chemical-chemical and chemical-protein interactions. Plos One. 9: e107767. PMID 25225900 DOI: 10.1371/Journal.Pone.0107767  0.275
2019 Zhang S, Pan X, Zeng T, Guo W, Gan Z, Zhang YH, Chen L, Zhang Y, Huang T, Cai YD. Copy Number Variation Pattern for Discriminating MACROD2 States of Colorectal Cancer Subtypes. Frontiers in Bioengineering and Biotechnology. 7: 407. PMID 31921812 DOI: 10.3389/Fbioe.2019.00407  0.274
2023 Ma Q, Huang F, Guo W, Feng K, Huang T, Cai Y. Identification of Phase-Separation-Protein-Related Function Based on Gene Ontology by Using Machine Learning Methods. Life (Basel, Switzerland). 13. PMID 37374089 DOI: 10.3390/life13061306  0.273
2019 Chen L, Zeng T, Pan X, Zhang YH, Huang T, Cai YD. Identifying Methylation Pattern and Genes Associated with Breast Cancer Subtypes. International Journal of Molecular Sciences. 20. PMID 31480430 DOI: 10.3390/Ijms20174269  0.273
2015 Chen L, Yang J, Zheng M, Kong X, Huang T, Cai YD. The Use of Chemical-Chemical Interaction and Chemical Structure to Identify New Candidate Chemicals Related to Lung Cancer. Plos One. 10: e0128696. PMID 26047514 DOI: 10.1371/Journal.Pone.0128696  0.269
2020 Zhang S, Zeng T, Hu B, Zhang YH, Feng K, Chen L, Niu Z, Li J, Huang T, Cai YD. Discriminating Origin Tissues of Tumor Cell Lines by Methylation Signatures and Dys-Methylated Rules. Frontiers in Bioengineering and Biotechnology. 8: 507. PMID 32528944 DOI: 10.3389/Fbioe.2020.00507  0.267
2020 Zhang YH, Pan X, Zeng T, Chen L, Huang T, Cai YD. Identifying the RNA signatures of coronary artery disease from combined lncRNA and mRNA expression profiles. Genomics. PMID 32919019 DOI: 10.1016/J.Ygeno.2020.09.016  0.267
2021 Pan X, Chen L, Liu I, Niu Z, Huang T, Cai YD. Identifying protein subcellular locations with embeddings-based node2loc. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33989156 DOI: 10.1109/TCBB.2021.3080386  0.265
2012 Huang T, Wang J, Cai YD, Yu H, Chou KC. Hepatitis C virus network based classification of hepatocellular cirrhosis and carcinoma. Plos One. 7: e34460. PMID 22493692 DOI: 10.1371/Journal.Pone.0034460  0.264
2003 Cai YD, Liu XJ, Xu XB, Chou KC. Support vector machines for the classification and prediction of beta-turn types. Journal of Peptide Science : An Official Publication of the European Peptide Society. 8: 297-301. PMID 12148778 DOI: 10.1002/Psc.401  0.264
2011 Huang T, Xu Z, Chen L, Cai YD, Kong X. Computational analysis of HIV-1 resistance based on gene expression profiles and the virus-host interaction network Plos One. 6. PMID 21394196 DOI: 10.1371/Journal.Pone.0017291  0.261
2017 Lu Y, Liu L, Lu D, Cai Y, Zheng M, Luo X, Jiang H, Chen K. Predicting Hepatotoxicity of Drug Metabolites via an Ensemble Approach Based on Support Cector Machine. Combinatorial Chemistry & High Throughput Screening. PMID 29165069 DOI: 10.2174/1386207320666171121113255  0.259
2010 Chen L, Feng KY, Cai YD, Chou KC, Li HP. Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. Bmc Bioinformatics. 11: 293. PMID 20513238 DOI: 10.1186/1471-2105-11-293  0.258
2014 Li BQ, You J, Huang T, Cai YD. Classification of non-small cell lung cancer based on copy number alterations Plos One. 9. PMID 24505469 DOI: 10.1371/Journal.Pone.0088300  0.257
2017 Liu C, Zhang YH, Huang T, Cai Y. Identification of transcription factors that may reprogram lung adenocarcinoma. Artificial Intelligence in Medicine. PMID 28377053 DOI: 10.1016/J.Artmed.2017.03.010  0.256
2014 Huang G, Zhang Y, Chen L, Zhang N, Huang T, Cai YD. Prediction of multi-type membrane proteins in human by an integrated approach. Plos One. 9: e93553. PMID 24676214 DOI: 10.1371/journal.pone.0093553  0.254
2022 Lu J, Li J, Ren J, Ding S, Zeng Z, Huang T, Cai YD. Functional and embedding feature analysis for pan-cancer classification. Frontiers in Oncology. 12: 979336. PMID 36248961 DOI: 10.3389/fonc.2022.979336  0.254
2020 Zhang YH, Li Z, Zeng T, Pan X, Chen L, Liu D, Li H, Huang T, Cai YD. Distinguishing Glioblastoma Subtypes by Methylation Signatures. Frontiers in Genetics. 11: 604336. PMID 33329750 DOI: 10.3389/fgene.2020.604336  0.253
2015 Shu Y, Zhu L, Yuan F, Kong X, Huang T, Cai YD. Analysis of the relationship between PM2.5 and lung cancer based on protein-protein interactions. Combinatorial Chemistry & High Throughput Screening. PMID 26552437 DOI: 10.2174/1386207319666151110123345  0.252
2022 Sun Q, Bai L, Zhu S, Cheng L, Xu Y, Cai YD, Chen H, Zhang J. Analysis of Lymphoma-Related Genes with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes Enrichment. Biomed Research International. 2022: 8503511. PMID 35795312 DOI: 10.1155/2022/8503511  0.251
2018 Chen N, Cai Y, Chen Q, Li R, Wang K, Huang Y, Hu S, Huang S, Zhang H, Zheng Z, Song W, Ma Z, Ma Y, Dang R, Zhang Z, et al. Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia. Nature Communications. 9: 2337. PMID 29904051 DOI: 10.1038/S41467-018-04737-0  0.249
2022 Wang S, Wu R, Lu J, Jiang Y, Huang T, Cai YD. Protein-protein interaction networks as miners of biological discovery. Proteomics. e2100190. PMID 35567424 DOI: 10.1002/pmic.202100190  0.248
2020 Cai Y, Fu W, Cai D, Heller R, Zheng Z, Wen J, Li H, Wang X, Alshawi A, Sun Z, Zhu S, Wang J, Yang M, Hu S, Li Y, et al. Ancient genomes reveal the evolutionary history and origin of cashmere producing goats in China. Molecular Biology and Evolution. PMID 32324877 DOI: 10.1093/Molbev/Msaa103  0.248
2017 Chen L, Zhang YH, Li J, Wang S, Zhang Y, Huang T, Cai YD. Deciphering the Relationship between Obesity and Various Diseases from a Network Perspective. Genes. 8. PMID 29258237 DOI: 10.3390/Genes8120392  0.246
2019 Li R, Fu W, Su R, Tian X, Du D, Zhao Y, Zheng Z, Chen Q, Gao S, Cai Y, Wang X, Li J, Jiang Y. Towards the Complete Goat Pan-Genome by Recovering Missing Genomic Segments From the Reference Genome. Frontiers in Genetics. 10: 1169. PMID 31803240 DOI: 10.3389/Fgene.2019.01169  0.246
2017 Wang X, Zheng Z, Cai Y, Chen T, Li C, Fu W, Jiang Y. CNVcaller: Highly Efficient and Widely Applicable Software for Detecting Copy Number Variations in Large Populations. Gigascience. PMID 29220491 DOI: 10.1093/Gigascience/Gix115  0.24
2022 Li Z, Wang D, Guo W, Zhang S, Chen L, Zhang YH, Lu L, Pan X, Huang T, Cai YD. Identification of cortical interneuron cell markers in mouse embryos based on machine learning analysis of single-cell transcriptomics. Frontiers in Neuroscience. 16: 841145. PMID 35911980 DOI: 10.3389/fnins.2022.841145  0.236
2014 Cai Y. Computational proteomics, systems biology and clinical implications. Biochimica Et Biophysica Acta. 1844: 163-4. PMID 24315471 DOI: 10.1016/J.Bbapap.2013.10.001  0.236
2016 Zhu L, Chen X, Kong X, Cai YD. Investigation of the roles of trace elements during hepatitis C virus infection using protein-protein interactions and a shortest path algorithm. Biochimica Et Biophysica Acta. PMID 27208424 DOI: 10.1016/J.Bbagen.2016.05.018  0.234
2024 Ma Q, Chen L, Feng K, Guo W, Huang T, Cai YD. Exploring Prognostic Gene Factors in Breast Cancer via Machine Learning. Biochemical Genetics. PMID 38383836 DOI: 10.1007/s10528-024-10712-w  0.233
2018 Cai Y, Huang T. Accelerating precision medicine through genetic and genomic big data analysis. Biochimica Et Biophysica Acta. PMID 29548968 DOI: 10.1016/J.Bbadis.2018.03.012  0.231
2022 Ren J, Zhou X, Guo W, Feng K, Huang T, Cai YD. Identification of Methylation Signatures and Rules for Sarcoma Subtypes by Machine Learning Methods. Biomed Research International. 2022: 5297235. PMID 36619306 DOI: 10.1155/2022/5297235  0.231
2022 Li Z, Huang F, Chen L, Huang T, Cai YD. Identifying In Vitro Cultured Human Hepatocytes Markers with Machine Learning Methods Based on Single-Cell RNA-Seq Data. Frontiers in Bioengineering and Biotechnology. 10: 916309. PMID 35706505 DOI: 10.3389/fbioe.2022.916309  0.231
2018 Wang S, Wang D, Li J, Huang T, Cai YD. Identification and analysis of the cleavage site in a signal peptide using SMOTE, dagging, and feature selection methods. Molecular Omics. 14: 64-73. PMID 29725682 DOI: 10.1039/c7mo00030h  0.23
2015 Huang T, Shu Y, Cai YD. Genetic differences among ethnic groups. Bmc Genomics. 16: 1093. PMID 26690364 DOI: 10.1186/S12864-015-2328-0  0.23
2004 Cai YD, Doig AJ. Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. Bioinformatics (Oxford, England). 20: 1292-300. PMID 14976029 DOI: 10.1093/bioinformatics/bth085  0.228
2018 Chen L, Zhang S, Pan X, Hu X, Zhang YH, Yuan F, Huang T, Cai YD. HIV infection alters the human epigenetic landscape. Gene Therapy. PMID 30443044 DOI: 10.1038/S41434-018-0051-6  0.227
2022 Li Z, Mei Z, Ding S, Chen L, Li H, Feng K, Huang T, Cai YD. Identifying Methylation Signatures and Rules for COVID-19 With Machine Learning Methods. Frontiers in Molecular Biosciences. 9: 908080. PMID 35620480 DOI: 10.3389/fmolb.2022.908080  0.227
2023 Ren J, Zhang Y, Guo W, Feng K, Yuan Y, Huang T, Cai YD. Identification of Genes Associated with the Impairment of Olfactory and Gustatory Functions in COVID-19 via Machine-Learning Methods. Life (Basel, Switzerland). 13. PMID 36983953 DOI: 10.3390/life13030798  0.225
2018 Cai Y, Huang T, Yang J. Applications of Bioinformatics and Systems Biology in Precision Medicine and Immunooncology. Biomed Research International. 2018: 1427978. PMID 30364014 DOI: 10.1155/2018/1427978  0.221
2022 Chen L, Li Z, Zhang S, Zhang YH, Huang T, Cai YD. Predicting RNA 5-Methylcytosine Sites by Using Essential Sequence Features and Distributions. Biomed Research International. 2022: 4035462. PMID 35071593 DOI: 10.1155/2022/4035462  0.221
2024 Huang F, Guo W, Chen L, Feng K, Huang T, Cai YD. Identifying Autophagy-Associated Proteins and Chemicals with a Random Walk-Based Method within Heterogeneous Interaction Network. Frontiers in Bioscience (Landmark Edition). 29: 21. PMID 38287832 DOI: 10.31083/j.fbl2901021  0.221
2024 Ding S, Liao H, Huang F, Chen L, Guo W, Feng K, Huang T, Cai YD. Analyzing domain features of small proteins using a machine-learning method. Proteomics. e2300302. PMID 38258387 DOI: 10.1002/pmic.202300302  0.22
2015 Wang W, Cai Y, Zhang YB, Huang HJ, Huang W, Li HO, Zhang BS, Wang HX. A 3 W high-voltage single-chip green light-emitting diode with multiple-cells network Journal of Nanomaterials. 2015. DOI: 10.1155/2015/248191  0.22
2013 Ji Y, Li Y, Cai Y, Chou K. Metagenome Assembly Validation: Which Metagenome Contigs are Bona Fide? Current Bioinformatics. 8: 511-523. DOI: 10.2174/1574893611308040013  0.219
2022 Chen L, Mei Z, Guo W, Ding S, Huang T, Cai YD. Recognition of Immune Cell Markers of COVID-19 Severity with Machine Learning Methods. Biomed Research International. 2022: 6089242. PMID 35528178 DOI: 10.1155/2022/6089242  0.218
2018 Cai Y. Novel Bioinformatics and Systems Biology approaches and techniques in Pharmaceutical and Biochemical Sciences. Combinatorial Chemistry & High Throughput Screening. 21: 391-392. PMID 30182826 DOI: 10.2174/138620732106180730112445  0.217
2022 Liu Z, Meng M, Ding S, Zhou X, Feng K, Huang T, Cai YD. Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods. Frontiers in Microbiology. 13: 1007295. PMID 36212830 DOI: 10.3389/fmicb.2022.1007295  0.216
2021 Zhang YH, Li Z, Lu L, Zeng T, Chen L, Li H, Huang T, Cai YD. Analysis of the Sequence Characteristics of Antifreeze Protein. Life (Basel, Switzerland). 11. PMID 34204983 DOI: 10.3390/life11060520  0.216
2022 Yuan F, Cao X, Zhang YH, Chen L, Huang T, Li Z, Cai YD. Identification of Novel Lung Cancer Driver Genes Connecting Different Omics Levels With a Heat Diffusion Algorithm. Frontiers in Cell and Developmental Biology. 10: 825272. PMID 35155435 DOI: 10.3389/fcell.2022.825272  0.215
2022 Li X, Zhou X, Ding S, Chen L, Feng K, Li H, Huang T, Cai YD. Identification of Transcriptome Biomarkers for Severe COVID-19 with Machine Learning Methods. Biomolecules. 12. PMID 36551164 DOI: 10.3390/biom12121735  0.215
2017 Cai Y. Editorial: Investigate the Genetic and Environmental Interactions in Complex Systems with High Throughput Screening. Combinatorial Chemistry & High Throughput Screening. 20: 580-581. PMID 29115195 DOI: 10.2174/138620732007171023105745  0.214
2020 Chen L, Li Z, Zeng T, Zhang YH, Liu D, Li H, Huang T, Cai YD. Identifying Robust Microbiota Signatures and Interpretable Rules to Distinguish Cancer Subtypes. Frontiers in Molecular Biosciences. 7: 604794. PMID 33330634 DOI: 10.3389/fmolb.2020.604794  0.214
2022 Ding S, Wang D, Zhou X, Chen L, Feng K, Xu X, Huang T, Li Z, Cai Y. Predicting Heart Cell Types by Using Transcriptome Profiles and a Machine Learning Method. Life (Basel, Switzerland). 12. PMID 35207515 DOI: 10.3390/life12020228  0.21
2023 Huang F, Ma Q, Ren J, Li J, Wang F, Huang T, Cai YD. Identification of Smoking-Associated Transcriptome Aberration in Blood with Machine Learning Methods. Biomed Research International. 2023: 5333361. PMID 36644165 DOI: 10.1155/2023/5333361  0.209
2022 Li Z, Pan X, Cai YD. Identification of Type 2 Diabetes Biomarkers From Mixed Single-Cell Sequencing Data With Feature Selection Methods. Frontiers in Bioengineering and Biotechnology. 10: 890901. PMID 35721855 DOI: 10.3389/fbioe.2022.890901  0.208
2023 Xu Y, Huang F, Guo W, Feng K, Zhu L, Zeng Z, Huang T, Cai YD. Characterization of chromatin accessibility patterns in different mouse cell types using machine learning methods at single-cell resolution. Frontiers in Genetics. 14: 1145647. PMID 36936430 DOI: 10.3389/fgene.2023.1145647  0.204
2020 Zhang YH, Li H, Zeng T, Chen L, Li Z, Huang T, Cai YD. Identifying Transcriptomic Signatures and Rules for SARS-CoV-2 Infection. Frontiers in Cell and Developmental Biology. 8: 627302. PMID 33505977 DOI: 10.3389/fcell.2020.627302  0.203
2021 Ding S, Li H, Zhang YH, Zhou X, Feng K, Li Z, Chen L, Huang T, Cai YD. Identification of Pan-Cancer Biomarkers Based on the Gene Expression Profiles of Cancer Cell Lines. Frontiers in Cell and Developmental Biology. 9: 781285. PMID 34917619 DOI: 10.3389/fcell.2021.781285  0.203
2021 Zhang YH, Guo W, Zeng T, Zhang S, Chen L, Gamarra M, Mansour RF, Escorcia-Gutierrez J, Huang T, Cai YD. Identification of Microbiota Biomarkers With Orthologous Gene Annotation for Type 2 Diabetes. Frontiers in Microbiology. 12: 711244. PMID 34305880 DOI: 10.3389/fmicb.2021.711244  0.201
2016 Cai Y, Huang T. Systems Genetics - Deciphering the Complex Disease with a Systems Approach. Biochimica Et Biophysica Acta. PMID 27487032 DOI: 10.1016/J.Bbagen.2016.07.034  0.201
2023 Ren JX, Gao Q, Zhou XC, Chen L, Guo W, Feng KY, Lu L, Huang T, Cai YD. Identification of Gene Markers Associated with COVID-19 Severity and Recovery in Different Immune Cell Subtypes. Biology. 12. PMID 37508378 DOI: 10.3390/biology12070947  0.199
2013 Cai Y, Wang Z, Wang ZW, Sun ZA, Yang HX, Tian HF, Ma C, Zhang B, Li JQ. Microstructural properties of K0.8 Fe1.6 S2, K0.8 Fe1.75 Se2-y Sy(0 ≤ y ≤ 2) and K0.8 Fe1.5+x S2(0 < x ≤ 0.5) single crystals Epl. 103: 37010. DOI: 10.1209/0295-5075/103/37010  0.197
2021 Zhang YH, Li Z, Zeng T, Chen L, Li H, Gamarra M, Mansour RF, Escorcia-Gutierrez J, Huang T, Cai YD. Investigating gene methylation signatures for fetal intolerance prediction. Plos One. 16: e0250032. PMID 33886611 DOI: 10.1371/journal.pone.0250032  0.196
2022 Li Z, Wang D, Liao H, Zhang S, Guo W, Chen L, Lu L, Huang T, Cai YD. Exploring the Genomic Patterns in Human and Mouse Cerebellums Via Single-Cell Sequencing and Machine Learning Method. Frontiers in Genetics. 13: 857851. PMID 35309141 DOI: 10.3389/fgene.2022.857851  0.191
2021 Chen L, Li Z, Zeng T, Zhang YH, Feng K, Huang T, Cai YD. Identifying COVID-19-Specific Transcriptomic Biomarkers with Machine Learning Methods. Biomed Research International. 2021: 9939134. PMID 34307679 DOI: 10.1155/2021/9939134  0.191
2021 Cai Y, Yang J, Huang T, Wang MW. Editorial: Computational Methods in Predicting Complex Disease Associated Genes and Environmental Factors. Frontiers in Genetics. 12: 679651. PMID 33968143 DOI: 10.3389/fgene.2021.679651  0.188
2022 Zhou X, Ding S, Wang D, Chen L, Feng K, Huang T, Li Z, Cai Y. Identification of Cell Markers and Their Expression Patterns in Skin Based on Single-Cell RNA-Sequencing Profiles. Life (Basel, Switzerland). 12. PMID 35455041 DOI: 10.3390/life12040550  0.187
2020 Yu X, Pan X, Zhang S, Zhang YH, Chen L, Wan S, Huang T, Cai YD. Identification of Gene Signatures and Expression Patterns During Epithelial-to-Mesenchymal Transition From Single-Cell Expression Atlas. Frontiers in Genetics. 11: 605012. PMID 33584803 DOI: 10.3389/fgene.2020.605012  0.185
2022 Li ZD, Yu X, Mei Z, Zeng T, Chen L, Xu XL, Li H, Huang T, Cai YD. Identifying luminal and basal mammary cell specific genes and their expression patterns during pregnancy. Plos One. 17: e0267211. PMID 35486595 DOI: 10.1371/journal.pone.0267211  0.18
2023 Yang Y, Zhang Y, Ren J, Feng K, Li Z, Huang T, Cai Y. Identification of Colon Immune Cell Marker Genes Using Machine Learning Methods. Life (Basel, Switzerland). 13. PMID 37763280 DOI: 10.3390/life13091876  0.178
2016 Deng H, Gao R, Liao X, Cai Y. Reference genes selection and relative expression analysis from Shiraia sp. SUPER-H168 productive of hypocrellin. Gene. PMID 26779826 DOI: 10.1016/j.gene.2016.01.019  0.175
2023 Ren J, Gao Q, Zhou X, Chen L, Guo W, Feng K, Huang T, Cai YD. Identification of key gene expression associated with quality of life after recovery from COVID-19. Medical & Biological Engineering & Computing. PMID 38123886 DOI: 10.1007/s11517-023-02988-8  0.174
2021 Yuan F, Li Z, Chen L, Zeng T, Zhang YH, Ding S, Huang T, Cai YD. Identifying the Signatures and Rules of Circulating Extracellular MicroRNA for Distinguishing Cancer Subtypes. Frontiers in Genetics. 12: 651610. PMID 33767734 DOI: 10.3389/fgene.2021.651610  0.173
2022 Huang F, Chen L, Guo W, Zhou X, Feng K, Huang T, Cai Y. Identifying COVID-19 Severity-Related SARS-CoV-2 Mutation Using a Machine Learning Method. Life (Basel, Switzerland). 12. PMID 35743837 DOI: 10.3390/life12060806  0.173
2020 Pan X, Cai Y, Li Z, Chen X, Heller R, Wang N, Wang Y, Zhao C, Wang Y, Xu H, Li S, Li M, Li C, Hu S, Li H, et al. Modes of genetic adaptations underlying functional innovations in the rumen. Science China. Life Sciences. PMID 33165812 DOI: 10.1007/s11427-020-1828-8  0.171
2022 Li Z, Guo W, Ding S, Feng K, Lu L, Huang T, Cai Y. Detecting Blood Methylation Signatures in Response to Childhood Cancer Radiotherapy via Machine Learning Methods. Biology. 11. PMID 35453806 DOI: 10.3390/biology11040607  0.171
2022 Li H, Wang D, Zhou X, Ding S, Guo W, Zhang S, Li Z, Huang T, Cai YD. Characterization of spleen and lymph node cell types CITE-seq and machine learning methods. Frontiers in Molecular Neuroscience. 15: 1033159. PMID 36311013 DOI: 10.3389/fnmol.2022.1033159  0.168
2021 Chen L, Zhou X, Zeng T, Pan X, Zhang YH, Huang T, Fang Z, Cai YD. Recognizing Pattern and Rule of Mutation Signatures Corresponding to Cancer Types. Frontiers in Cell and Developmental Biology. 9: 712931. PMID 34513841 DOI: 10.3389/fcell.2021.712931  0.164
2022 Jian F, Huang F, Zhang YH, Huang T, Cai YD. Identifying anal and cervical tumorigenesis-associated methylation signaling with machine learning methods. Frontiers in Oncology. 12: 998032. PMID 36249027 DOI: 10.3389/fonc.2022.998032  0.163
2023 Ren J, Zhou X, Huang K, Chen L, Guo W, Feng K, Huang T, Cai YD. Identification of key genes associated with persistent immune changes and secondary immune activation responses induced by influenza vaccination after COVID-19 recovery by machine learning methods. Computers in Biology and Medicine. 169: 107883. PMID 38157776 DOI: 10.1016/j.compbiomed.2023.107883  0.162
2023 Li J, Ren J, Liao H, Guo W, Feng K, Huang T, Cai YD. Identification of dynamic gene expression profiles during sequential vaccination with ChAdOx1/BNT162b2 using machine learning methods. Frontiers in Microbiology. 14: 1138674. PMID 37007526 DOI: 10.3389/fmicb.2023.1138674  0.161
2015 Cai Y, Pi W, Sivaprakasam S, Zhu X, Zhang M, Chen J, Makala L, Lu C, Wu J, Teng Y, Pace B, Tuan D, Singh N, Li H. UFBP1, a Key Component of the Ufm1 Conjugation System, Is Essential for Ufmylation-Mediated Regulation of Erythroid Development. Plos Genetics. 11: e1005643. PMID 26544067 DOI: 10.1371/Journal.Pgen.1005643  0.161
2021 Huang Y, Li Y, Wang X, Yu J, Cai Y, Zheng Z, Li R, Zhang S, Chen N, Asadollahpour Nanaei H, Hanif Q, Chen Q, Fu W, Li C, Cao X, et al. An atlas of CNV maps in cattle, goat and sheep. Science China. Life Sciences. PMID 33486588 DOI: 10.1007/s11427-020-1850-x  0.16
2021 Huang GH, Zhang YH, Chen L, Li Y, Huang T, Cai YD. Identifying Lung Cancer Cell Markers with Machine Learning Methods and Single-Cell RNA-Seq Data. Life (Basel, Switzerland). 11. PMID 34575089 DOI: 10.3390/life11090940  0.158
2022 Song J, Huang F, Chen L, Feng K, Jian F, Huang T, Cai YD. Identification of methylation signatures associated with CAR T cell in B-cell acute lymphoblastic leukemia and non-hodgkin's lymphoma. Frontiers in Oncology. 12: 976262. PMID 36033519 DOI: 10.3389/fonc.2022.976262  0.157
2022 Lu J, Meng M, Zhou X, Ding S, Feng K, Zeng Z, Huang T, Cai YD. Identification of COVID-19 severity biomarkers based on feature selection on single-cell RNA-Seq data of CD8 T cells. Frontiers in Genetics. 13: 1053772. PMID 36437952 DOI: 10.3389/fgene.2022.1053772  0.156
2015 Mitchell LA, Chuang J, Agmon N, Khunsriraksakul C, Phillips NA, Cai Y, Truong DM, Veerakumar A, Wang Y, Mayorga M, Blomquist P, Sadda P, Trueheart J, Boeke JD. Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae. Nucleic Acids Research. PMID 25956652 DOI: 10.1093/Nar/Gkv466  0.154
2022 Li Z, Guo W, Ding S, Chen L, Feng K, Huang T, Cai YD. Identifying Key MicroRNA Signatures for Neurodegenerative Diseases With Machine Learning Methods. Frontiers in Genetics. 13: 880997. PMID 35528544 DOI: 10.3389/fgene.2022.880997  0.152
2015 Kong C, Fodjo EK, Li D, Cai Y, Huang D, Wang Y, Shen X. Chitosan-based adsorption and freeze deproteinization: Improved extraction and purification of synthetic colorants from protein-rich food samples. Food Chemistry. 188: 240-7. PMID 26041188 DOI: 10.1016/j.foodchem.2015.04.115  0.151
2022 Huang F, Chen L, Guo W, Huang T, Cai YD. Identification of Human Cell Cycle Phase Markers Based on Single-Cell RNA-Seq Data by Using Machine Learning Methods. Biomed Research International. 2022: 2516653. PMID 36004205 DOI: 10.1155/2022/2516653  0.15
2015 Shi Z, Fan C, Huang J, Bai H, Qin W, Cai Y, Qian X. [Preparation of grapheme oxide based immobilized lectin and its application to efficient glycoprotein/glycopeptide enrichment]. SE Pu = Chinese Journal of Chromatography / Zhongguo Hua Xue Hui. 33: 116-22. PMID 25989682  0.149
2015 Jin H, Wu J, Yang Q, Cai Y, He W, Liu C. High mobility group box 1 protein polymorphism affects susceptibility to recurrent pregnancy loss by up-regulating gene expression in chorionic villi. Journal of Assisted Reproduction and Genetics. PMID 25956264 DOI: 10.1007/s10815-015-0493-3  0.148
2015 Wang Q, Wu Y, Cai Y, Zhuang Y, Xu L, Wu B, Zhang Y. Spleen Transcriptome Profile of Muscovy Ducklings in Response to Infection With Muscovy Duck Reovirus. Avian Diseases. 59: 282-290. PMID 26473680 DOI: 10.1637/10992-112514-Reg  0.148
2023 Xu Y, Ma Q, Ren J, Chen L, Guo W, Feng K, Zeng Z, Huang T, Cai Y. Using Machine Learning Methods in Identifying Genes Associated with COVID-19 in Cardiomyocytes and Cardiac Vascular Endothelial Cells. Life (Basel, Switzerland). 13. PMID 37109540 DOI: 10.3390/life13041011  0.146
2023 Li J, Huang F, Ma Q, Guo W, Feng K, Huang T, Cai YD. Identification of genes related to immune enhancement caused by heterologous ChAdOx1-BNT162b2 vaccines in lymphocytes at single-cell resolution with machine learning methods. Frontiers in Immunology. 14: 1131051. PMID 36936955 DOI: 10.3389/fimmu.2023.1131051  0.145
2015 Zhang J, Cai Y, Hu H, Lan P, Wang L, Huang M, Kang L, Wu X, Wang H, Ling J, Xiao J, Wang J, Deng Y. Nomogram basing pre-treatment parameters predicting early response for locally advanced rectal cancer with Neoadjuvant chemotherapy alone: A subgroup efficacy analysis of FOWARC study. Oncotarget. PMID 26646794 DOI: 10.18632/oncotarget.6469  0.145
2015 Guo Y, Dong J, Zhou T, Auxillos J, Li T, Zhang W, Wang L, Shen Y, Luo Y, Zheng Y, Lin J, Chen GQ, Wu Q, Cai Y, Dai J. YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae. Nucleic Acids Research. PMID 25956650 DOI: 10.1093/Nar/Gkv464  0.143
2015 Tang K, Cai Y, Joshi S, Tovar E, Tucker SC, Maddipati KR, Crissman JD, Repaskey WT, Honn KV. Convergence of eicosanoid and integrin biology: 12-lipoxygenase seeks a partner. Molecular Cancer. 14: 111. PMID 26037302 DOI: 10.1186/S12943-015-0382-5  0.141
2015 Gao JS, Wu N, Shen ZL, Lv K, Qian SH, Guo N, Sun X, Cai YP, Lin Y. Molecular cloning, expression analysis and subcellular localization of a Transparent Testa 12 ortholog in brown cotton (Gossypium hirsutum L.). Gene. PMID 26548815 DOI: 10.1016/j.gene.2015.11.002  0.141
2016 Fu W, Chen L, Wang Z, Zhao C, Chen G, Liu X, Dai Y, Cai Y, Li C, Zhou J, Liang G. Determination of the binding mode for anti-inflammatory natural product xanthohumol with myeloid differentiation protein 2. Drug Design, Development and Therapy. 10: 455-63. PMID 26869767 DOI: 10.2147/DDDT.S98466  0.14
2015 Zhang Y, Cai Y, Yu H, Li H. iTRAQ-Based Quantitative Proteomic Analysis Identified HSC71 as a Novel Serum Biomarker for Renal Cell Carcinoma. Biomed Research International. 2015: 802153. PMID 26425554 DOI: 10.1155/2015/802153  0.14
2016 Lu C, Makala L, Wu D, Cai Y. Targeting translation: eIF4E as an emerging anticancer drug target. Expert Reviews in Molecular Medicine. 18: e2. PMID 26775675 DOI: 10.1017/erm.2015.20  0.136
2015 Su J, Wang F, Cai Y, Jin J. The Functional Analysis of Histone Acetyltransferase MOF in Tumorigenesis. International Journal of Molecular Sciences. 17. PMID 26784169 DOI: 10.3390/ijms17010099  0.134
2022 Ren J, Guo W, Feng K, Huang T, Cai Y. Identifying MicroRNA Markers That Predict COVID-19 Severity Using Machine Learning Methods. Life (Basel, Switzerland). 12. PMID 36556329 DOI: 10.3390/life12121964  0.133
2015 Miao F, Cai YP, Zhang YX, Li Y, Zhang YT. Risk Prediction of One-Year Mortality in Patients with Cardiac Arrhythmias Using Random Survival Forest. Computational and Mathematical Methods in Medicine. 2015: 303250. PMID 26379761 DOI: 10.1155/2015/303250  0.132
2023 Li X, Ge S, Yang K, Cai Y, Liu Z, Huang B, Su Y, Zhang Y, Shao X. Multi-target distortion correction in 3D shape from polarization using a monocular camera system by deep neural networks. Optics Letters. 48: 5053-5056. PMID 37773383 DOI: 10.1364/OL.499161  0.132
2023 Ren JX, Chen L, Guo W, Feng KY, Huang T, Cai YD. Patterns of Gene Expression Profiles Associated with Colorectal Cancer in Colorectal Mucosa by Using Machine Learning Methods. Combinatorial Chemistry & High Throughput Screening. PMID 37957897 DOI: 10.2174/0113862073266300231026103844  0.131
2015 Cai YN, Dai XH, Zhang QH, Hu R, Dai ZM. Gene expression profiling of somatic and pluripotent cells reveals novel pathways involved in reprogramming. Genetics and Molecular Research : Gmr. 14: 12085-12092. PMID 26505355 DOI: 10.4238/2015.October.5.21  0.128
2023 Lin X, Ma Q, Chen L, Guo W, Huang Z, Huang T, Cai YD. Identifying genes associated with resistance to KRAS G12C inhibitors via machine learning methods. Biochimica Et Biophysica Acta. General Subjects. 1867: 130484. PMID 37805078 DOI: 10.1016/j.bbagen.2023.130484  0.127
2023 Dai X, Bian P, Hu D, Luo F, Huang Y, Jiao S, Wang X, Gong M, Li R, Cai Y, Wen J, Yang Q, Deng W, Nanaei HA, Wang Y, et al. A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other species. Genome Research. 33: 1284-1298. PMID 37714713 DOI: 10.1101/gr.277481.122  0.126
2021 Fu W, Wang R, Yu J, Hu D, Cai Y, Shao J, Jiang Y. GGVD: A goat genome variation database for tracking the dynamic evolutionary process of selective signatures and ancient introgressions. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 33965348 DOI: 10.1016/j.jgg.2021.03.003  0.125
2015 Cai Y, Schwartz DK. Influence of protein surface coverage on anomalously strong adsorption sites. Acs Applied Materials & Interfaces. PMID 26651508 DOI: 10.1021/Acsami.5B09459  0.124
2015 Cai Y, He J, Zhang D. Long noncoding RNA CCAT2 promotes breast tumor growth by regulating the Wnt signaling pathway. Oncotargets and Therapy. 8: 2657-64. PMID 26442763 DOI: 10.2147/OTT.S90485  0.124
2015 Cai Y, Fang X, He C, Li P, Xiao F, Wang Y, Chen M. Cucurbitacins: A Systematic Review of the Phytochemistry and Anticancer Activity. The American Journal of Chinese Medicine. 1-20. PMID 26503558 DOI: 10.1142/S0192415X15500755  0.124
2016 Zhao J, Li H, Cheng G, Cai Y. On predicting the effective elastic properties of polymer nanocomposites by novel numerical implementation of asymptotic homogenization method Composite Structures. 135: 297-305. DOI: 10.1016/j.compstruct.2015.09.039  0.123
2015 Chen Y, Cai Y, Hong C, Jackson D. Inference for correlated effect sizes using multiple univariate meta-analyses. Statistics in Medicine. PMID 26537017 DOI: 10.1002/sim.6789  0.122
2015 Huang HJ, Liu CW, Cai YF, Zhang MZ, Bao YY, Zhang CX. A salivary sheath protein essential for the interaction of the brown planthopper with rice plants. Insect Biochemistry and Molecular Biology. PMID 26483289 DOI: 10.1016/j.ibmb.2015.10.007  0.122
2012 Cai YD. Editorial. The application of systems biology and bioinformatics methods in proteomics, transcriptomics and metabolomics. Protein and Peptide Letters. 19: 2-3. PMID 22380568 DOI: 10.2174/092986612798472947  0.121
2015 Guan ZB, Cai YJ, Zhang YZ, Zhao H, Liao XR. Complete genome sequence of Bacillus pumilus W3: A strain exhibiting high laccase activity. Journal of Biotechnology. 207: 8-9. PMID 25957807 DOI: 10.1016/j.jbiotec.2015.04.019  0.121
2023 Ma QL, Huang FM, Guo W, Feng KY, Huang T, Cai YD. Machine Learning Classification of Time since BNT162b2 COVID-19 Vaccination Based on Array-Measured Antibody Activity. Life (Basel, Switzerland). 13. PMID 37374086 DOI: 10.3390/life13061304  0.121
2016 Li X, Xie H, Wang R, Cai Y, Cao J, Wang F, Min H, Deng X. Empirical analysis: stock market prediction via extreme learning machine Neural Computing and Applications. 27: 67-78. DOI: 10.1007/s00521-014-1550-z  0.121
2015 Hu T, Weng S, Tang W, Xue R, Chen S, Cai G, Cai Y, Shen X, Zhang S, Dong L. Overexpression of BIRC6 Is a Predictor of Prognosis for Colorectal Cancer. Plos One. 10: e0125281. PMID 25933218 DOI: 10.1371/journal.pone.0125281  0.121
2024 Zhang YH, Huang F, Li J, Shen W, Chen L, Feng K, Huang T, Cai YD. Identification of Protein-Protein Interaction Associated Functions Based on Gene Ontology. The Protein Journal. PMID 38436837 DOI: 10.1007/s10930-024-10180-6  0.12
2011 Cai Y. Protein and Peptide Letters. PMID 21919866  0.12
2015 Deng Y, Cai Y, Huang Y, Yang Z, Bai Y, Liu Y, Deng X, Wang J. High SLFN11 expression predicts better survival for patients with KRAS exon 2 wild type colorectal cancer after treated with adjuvant oxaliplatin-based treatment. Bmc Cancer. 15: 833. PMID 26525741 DOI: 10.1186/s12885-015-1840-6  0.118
2022 Li H, Huang F, Liao H, Li Z, Feng K, Huang T, Cai YD. Identification of COVID-19-Specific Immune Markers Using a Machine Learning Method. Frontiers in Molecular Biosciences. 9: 952626. PMID 35928229 DOI: 10.3389/fmolb.2022.952626  0.118
2015 Mou J, Park A, Cai Y, Yuan J, Yuan C. Structure-activity relationship study of E6 as a novel necroptosis inducer. Bioorganic & Medicinal Chemistry Letters. 25: 3057-61. PMID 26048796 DOI: 10.1016/J.Bmcl.2015.04.038  0.118
2015 Wang H, Liu W, Cai Y, Ma L, Ma C, Luo A, Huang Y. Glutaminase 1 is a potential biomarker for chronic post-surgical pain in the rat dorsal spinal cord using differential proteomics. Amino Acids. PMID 26427714 DOI: 10.1007/S00726-015-2085-Z  0.116
2016 Liu Z, Li X, Zhang JT, Cai YJ, Cheng TL, Cheng C, Wang Y, Zhang CC, Nie YH, Chen ZF, Bian WJ, Zhang L, Xiao J, Lu B, Zhang YF, et al. Autism-like behaviours and germline transmission in transgenic monkeys overexpressing MeCP2. Nature. PMID 26808898 DOI: 10.1038/Nature16533  0.116
2022 Asadollahpour Nanaei H, Cai Y, Alshawi A, Wen J, Hussain T, Fu WW, Xu NY, Essa A, Lenstra JA, Wang X, Jiang Y. Genomic analysis of indigenous goats in Southwest Asia reveals evidence of ancient adaptive introgression related to desert climate. Zoological Research. 44: 20-29. PMID 36257823 DOI: 10.24272/j.issn.2095-8137.2022.242  0.116
2016 Deming Y, Xia J, Cai Y, Lord J, Del-Aguila JL, Fernandez MV, Carrell D, Black K, Budde J, Ma S, Saef B, Howells B, Bertelsen S, Bailey M, Ridge PG, et al. Genetic studies of plasma analytes identify novel potential biomarkers for several complex traits Scientific Reports. 6. DOI: 10.1038/Srep18092  0.115
2022 Cai Y, Jia P, Huang T. Editorial: Finding new epigenomics and epigenetics biomarkers for complex diseases and significant developmental events with machine learning methods, Volume II. Frontiers in Genetics. 13: 1098821. PMID 36531248 DOI: 10.3389/fgene.2022.1098821  0.115
2022 Li Z, Guo W, Zeng T, Yin J, Feng K, Huang T, Cai YD. Detecting Brain Structure-Specific Methylation Signatures and Rules for Alzheimer's Disease. Frontiers in Neuroscience. 16: 895181. PMID 35585924 DOI: 10.3389/fnins.2022.895181  0.114
2015 Li Y, Liu D, Zhou Y, Li Y, Xie J, Lee RJ, Cai Y, Teng L. Silencing of Survivin Expression Leads to Reduced Proliferation and Cell Cycle Arrest in Cancer Cells. Journal of Cancer. 6: 1187-94. PMID 26516368 DOI: 10.7150/jca.12437  0.114
2015 Xu MJ, Cai Y, Wang H, Altamirano J, Chang B, Bertola A, Odena G, Lu J, Tanaka N, Matsusue K, Matsubara T, Mukhopadhyay P, Kimura S, Pacher P, Gonzalez FJ, et al. Fat-specific Protein 27/CIDEC Promotes Development of Alcoholic Steatohepatitis in Mice and Humans. Gastroenterology. PMID 26099526 DOI: 10.1053/j.gastro.2015.06.009  0.114
2023 Li H, Ma Q, Ren J, Guo W, Feng K, Li Z, Huang T, Cai YD. Immune responses of different COVID-19 vaccination strategies by analyzing single-cell RNA sequencing data from multiple tissues using machine learning methods. Frontiers in Genetics. 14: 1157305. PMID 37007947 DOI: 10.3389/fgene.2023.1157305  0.114
2022 Li C, Wu Y, Chen B, Cai Y, Guo J, Leonard AS, Kalds P, Zhou S, Zhang J, Zhou P, Gan S, Jia T, Pu T, Suo L, Li Y, et al. Markhor-derived introgression of a genomic region encompassing PAPSS2 confers high-altitude adaptability in Tibetan goats. Molecular Biology and Evolution. PMID 36382357 DOI: 10.1093/molbev/msac253  0.113
2015 Shen Y, Stracquadanio G, Wang Y, Yang K, Mitchell LA, Xue Y, Cai Y, Chen T, Dymond JS, Kang K, Gong J, Zeng X, Zhang Y, Li Y, Feng Q, et al. SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes. Genome Research. PMID 26566658 DOI: 10.1101/Gr.193433.115  0.112
2016 Zhang A, Cai Y, Wang PF, Qu JN, Luo ZC, Chen XD, Huang B, Liu Y, Huang WQ, Wu J, Yin YH. Diagnosis and prognosis of neutrophil gelatinase-associated lipocalin for acute kidney injury with sepsis: a systematic review and meta-analysis. Critical Care (London, England). 20: 41. PMID 26880194 DOI: 10.1186/s13054-016-1212-x  0.111
2015 Chen X, Wang Y, Ma Z, Li N, Han W, Zhang Q, Cai Y, Cheng J. Asp141 and the Hydrogen-Bond Chain Asp141-Asn109-Asp33 Are Respectively Essential for GT80 Sialyltransferase Activity and Structural Stability. Biochemistry. Biokhimiia. 80: 1073-1079. PMID 26547076 DOI: 10.1134/S0006297915080131  0.11
2016 Cai Y, Wu J. A robust algorithm for the generation of integration cells in Numerical Manifold Method International Journal of Impact Engineering. 90: 165-176. DOI: 10.1016/j.ijimpeng.2015.10.015  0.11
2022 Cai D, Zhu S, Gong M, Zhang N, Wen J, Liang Q, Sun W, Shao X, Guo Y, Cai Y, Zheng Z, Zhang W, Hu S, Wang X, Tian H, et al. Radiocarbon and genomic evidence for the survival of until the late Holocene. Elife. 11. PMID 35543411 DOI: 10.7554/eLife.73346  0.109
2015 Jia M, Shan Z, Yang Y, Liu C, Li J, Luo ZG, Zhang M, Cai Y, Wen W, Wang W. The structural basis of Miranda-mediated Staufen localization during Drosophila neuroblast asymmetric division. Nature Communications. 6: 8381. PMID 26423004 DOI: 10.1038/Ncomms9381  0.108
2015 Stice S, Liu G, Matulis S, Boise LH, Cai Y. Determination of multiple human arsenic metabolites employing high performance liquid chromatography inductively coupled plasma mass spectrometry. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1009: 55-65. PMID 26708625 DOI: 10.1016/J.Jchromb.2015.12.008  0.108
2016 Yang Q, An D, Cai Y. A Novel Evolution Kalman Filter Algorithm for Short-Term Climate Prediction Asian Journal of Control. 18: 400-405. DOI: 10.1002/asjc.1051  0.108
2015 Liu D, Wu D, Zhao L, Yang Y, Ding J, Dong L, Hu L, Wang F, Zhao X, Cai Y, Jin J. Arsenic Trioxide Reduces Global Histone H4 Acetylation at Lysine 16 through Direct Binding to Histone Acetyltransferase hMOF in Human Cells. Plos One. 10: e0141014. PMID 26473953 DOI: 10.1371/Journal.Pone.0141014  0.108
2015 Shi H, Wu Y, Wang Y, Zhou M, Yan S, Chen Z, Gu D, Cai Y. Liquiritigenin Potentiates the Inhibitory Effects of Cisplatin on Invasion and Metastasis Via Downregulation MMP-2/9 and PI3 K/AKT Signaling Pathway in B16F10 Melanoma Cells and Mice Model. Nutrition and Cancer. 67: 761-70. PMID 25978595 DOI: 10.1080/01635581.2015.1037962  0.108
2020 Cai Y, Huang T, Jia P. Editorial: Advanced Interpretable Machine Learning Methods for Clinical NGS Big Data of Complex Hereditary Diseases. Frontiers in Genetics. 11: 600902. PMID 33193747 DOI: 10.3389/fgene.2020.600902  0.108
2016 Xie H, Li X, Wang T, Chen L, Li K, Wang FL, Cai Y, Li Q, Min H. Personalized search for social media via dominating verbal context Neurocomputing. 172: 27-37. DOI: 10.1016/J.Neucom.2014.12.109  0.107
2015 Culhane KJ, Liu Y, Cai Y, Yan EC. Transmembrane signal transduction by peptide hormones via family B G protein-coupled receptors. Frontiers in Pharmacology. 6: 264. PMID 26594176 DOI: 10.3389/Fphar.2015.00264  0.106
2013 Cai YD. Editorial: The application of systems biology and bioinformatics methods in proteomics, transcriptomics and metabolomics (PART II). Protein and Peptide Letters. 20: 241-2. PMID 22591468 DOI: 10.2174/0929866511320030001  0.105
2020 Cai Y, Huang T. Translating proteomics big data into biomedical applications with computational modeling. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140560. PMID 33157273 DOI: 10.1016/j.bbapap.2020.140560  0.104
2016 Gao H, Cai Y. Nonlinear disturbance observer-based model predictive control for a generic hypersonic vehicle Proceedings of the Institution of Mechanical Engineers. Part I: Journal of Systems and Control Engineering. 230: 3-12. DOI: 10.1177/0959651815605664  0.103
2015 Zhang F, Huang ZX, Bao H, Cong F, Wang H, Chai PC, Xi Y, Ge W, Somers WG, Yang Y, Cai Y, Yang X. Phosphotyrosyl phosphatase activator facilitates Miranda localization through dephosphorylation in dividing neuroblasts. Development (Cambridge, England). PMID 26586222 DOI: 10.1242/dev.127233  0.102
2022 Zhang YH, Li ZD, Zeng T, Chen L, Huang T, Cai YD. Screening gene signatures for clinical response subtypes of lung transplantation. Molecular Genetics and Genomics : Mgg. PMID 35780439 DOI: 10.1007/s00438-022-01918-x  0.102
2015 Yang Y, Cai Y, Wu G, Chen X, Liu Y, Wang X, Yu J, Li C, Chen X, Jose PA, Zhou L, Zeng C. Plasma long non-coding RNA, CoroMarker, a novel biomarker for diagnosis of coronary artery disease. Clinical Science (London, England : 1979). 129: 675-85. PMID 26201019 DOI: 10.1042/Cs20150121  0.102
2015 Zhang D, Dai Y, Cai Y, Suo T, Liu H, Wang Y, Cheng Z, Liu H. KLF2 is downregulated in pancreatic ductal adenocarcinoma and inhibits the growth and migration of cancer cells. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26449825 DOI: 10.1007/s13277-015-4053-3  0.101
2015 Cai Y, Yan X, Zhang G, Zhao W, Jiao S. The predictive value of ERCC1 and p53 for the effect of panobinostat and cisplatin combination treatment in NSCLC. Oncotarget. PMID 25944617  0.101
2015 Cai Y, Li X, Li M, Chen X, Hu H, Ni J, Wang Y. Traceability and Quality Control in Traditional Chinese Medicine: From Chemical Fingerprint to Two-Dimensional Barcode. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 251304. PMID 26089936 DOI: 10.1155/2015/251304  0.1
2016 Wang J, Sheng Z, Yang W, Cai Y. Elevated Serum Concentration of Chitinase 3-Like 1 is an Independent Prognostic Biomarker for Poor Survival in Lung Cancer Patients. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 38: 461-468. PMID 26828595 DOI: 10.1159/000438643  0.1
2015 Wang KF, Yang H, Jiang WQ, Li S, Cai YC. Puquitinib mesylate (XC-302) induces autophagy via inhibiting the PI3K/AKT/mTOR signaling pathway in nasopharyngeal cancer cells. International Journal of Molecular Medicine. PMID 26499488 DOI: 10.3892/ijmm.2015.2378  0.099
2015 Qin G, Cai Y, Long J, Zeng H, Xu W, Li Y, Liu M, Zhang H, He ZL, Chen WG. Cathepsin L is involved in proliferation and invasion of breast cancer cells. Neoplasma. PMID 26639231 DOI: 10.4149/neo_2016_004  0.097
2015 Wang W, Liu X, Gai X, Ren J, Liu X, Cai Y, Wang Q, Ren H. Cucumis sativus L. WAX2 Plays a Pivotal Role in Wax Biosynthesis, Influencing Pollen Fertility and Plant Biotic and Abiotic Stress Responses. Plant & Cell Physiology. PMID 26023108 DOI: 10.1093/pcp/pcv052  0.095
2016 Qu J, Cai Y, Zheng J, Yang W, Hu Y. Interference Mitigation Based on Intelligent Location Selection in a Canonical Communication Network Frequenz. 70: 57-61. DOI: 10.1515/freq-2015-0164  0.095
2015 Feng Y, Cai Y, Sun-Waterhouse D, Cui C, Su G, Lin L, Zhao M. Approaches of aroma extraction dilution analysis (AEDA) for headspace solid phase microextraction and gas chromatography-olfactometry (HS-SPME-GC-O): Altering sample amount, diluting the sample or adjusting split ratio? Food Chemistry. 187: 44-52. PMID 25976996 DOI: 10.1016/j.foodchem.2015.03.138  0.095
2022 Consortium VG, Nijman IJ, Rosen BD, Bardou P, Faraut T, Cumer T, Daly KG, Zheng Z, Cai Y, Asadollahpour H, Kul BÇ, Zhang WY, Guangxin E, Ayin A, Baird H, et al. Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. Molecular Ecology. PMID 35751552 DOI: 10.1111/mec.16579  0.094
2013 Cai Y, Huang T, Chen L, Niu B. Application of systems biology and bioinformatics methods in biochemistry and biomedicine. Biomed Research International. 2013: 651968. PMID 24490168 DOI: 10.1155/2013/651968  0.093
2016 Cai Y, Zhang W, Chen Z, Shi Z, He C, Chen M. Recent insights into the biological activities and drug delivery systems of tanshinones. International Journal of Nanomedicine. 11: 121-30. PMID 26792989 DOI: 10.2147/IJN.S84035  0.093
2015 Xue ZQ, He ZW, Yu JJ, Cai Y, Qiu WY, Pan A, Gai WP, Cai H, Luo XG, Ma C, Yan XX. Non-neuronal and neuronal BACE1 elevation in association with angiopathic and leptomeningeal β-amyloid deposition in the human brain. Bmc Neurology. 15: 71. PMID 25934480 DOI: 10.1186/S12883-015-0327-Z  0.092
2016 Jin Q, Jiao C, Sun S, Song C, Cai Y, Lin Y, Fan H, Zhu Y. Metabolic Analysis of Medicinal Dendrobium officinale and Dendrobium huoshanense during Different Growth Years. Plos One. 11: e0146607. PMID 26752292 DOI: 10.1371/journal.pone.0146607  0.092
2023 Yuan F, Ren J, Liao H, Guo W, Chen L, Feng K, Huang T, Cai YD. Identification of Whole-Blood DNA Methylation Signatures and Rules Associated with COVID-19 Severity. Frontiers in Bioscience (Landmark Edition). 28: 284. PMID 38062828 DOI: 10.31083/j.fbl2811284  0.092
2015 Yi X, Cai Y, Li W. Isoflurane Damages the Developing Brain of Mice and Induces Subsequent Learning and Memory Deficits through FASL-FAS Signaling. Biomed Research International. 2015: 315872. PMID 26609525 DOI: 10.1155/2015/315872  0.092
2015 Ding J, Wang C, Li PC, Zhao Z, Qian C, Wang CX, Cai Y, Teng GJ. Dual-reporter Imaging and its Potential Application in Tracking Studies. Journal of Fluorescence. PMID 26498458 DOI: 10.1007/s10895-015-1673-3  0.092
2015 Guan G, Zhang S, Liu S, Cai Y, Low M, Teng CP, Phang IY, Cheng Y, Duei KL, Srinivasan BM, Zheng Y, Zhang YW, Han MY. Protein Induces Layer-by-Layer Exfoliation of Transition Metal Dichalcogenides. Journal of the American Chemical Society. 137: 6152-5. PMID 25936424 DOI: 10.1021/jacs.5b02780  0.092
2015 Liu X, Zhou Y, Yang F, Liu P, Cai Y, Huang J, Zhu L, Xu Z. Rapid and sensitive detection of Porcine torovirus by a reverse transcription loop-mediated isothermal amplification assay (RT-LAMP). Journal of Virological Methods. PMID 26611229 DOI: 10.1016/j.jviromet.2015.11.009  0.091
2023 Cheng H, Zhang Z, Wen J, Lenstra JA, Heller R, Cai Y, Guo Y, Li M, Li R, Li W, He S, Wang J, Shao J, Song Y, Zhang L, et al. Long divergent haplotypes introgressed from wild sheep are associated with distinct morphological and adaptive characteristics in domestic sheep. Plos Genetics. 19: e1010615. PMID 36821549 DOI: 10.1371/journal.pgen.1010615  0.091
2024 Cai Y, Li X, Liu F, Liu J, Liu K, Liu Z, Shao X. Enhancing polarization 3D facial imaging: overcoming azimuth ambiguity without extra depth devices. Optics Express. 31: 43891-43907. PMID 38178474 DOI: 10.1364/OE.505074  0.09
2016 Oleaga C, Bernabini C, Smith AS, Srinivasan B, Jackson M, McLamb W, Platt V, Bridges R, Cai Y, Santhanam N, Berry B, Najjar S, Akanda N, Guo X, Martin C, et al. Multi-Organ toxicity demonstration in a functional human in vitro system composed of four organs. Scientific Reports. 6: 20030. PMID 26837601 DOI: 10.1038/Srep20030  0.09
2015 Yang H, Xia Q, Zou Y, Wang K, Jiang W, Cai Y. M410, a combretastatin A4 analogue, disrupts microtubules and inhibits HIF-1α in human breast cancer cells. Oncology Reports. 34: 334-40. PMID 25976207 DOI: 10.3892/or.2015.3975  0.089
2015 Zhao Y, Zhao MM, Cai Y, Zheng MF, Sun WL, Zhang SY, Kong W, Gu J, Wang X, Xu MJ. Mammalian target of rapamycin signaling inhibition ameliorates vascular calcification via Klotho upregulation. Kidney International. PMID 26061549 DOI: 10.1038/ki.2015.160  0.089
2015 Du J, Hong J, Xu C, Cai Y, Xiang B, Zhou C, Xu X. Screening and Identification of ssDNA Aptamer for Human GP73. Biomed Research International. 2015: 610281. PMID 26583119 DOI: 10.1155/2015/610281  0.086
2015 Gu XD, Cai YT, Zhou YM, Li ZY, Xiang JB, Chen ZY. Prognostic factors and multidisciplinary treatment modalities for brain metastases from colorectal cancer: analysis of 93 patients. Bmc Cancer. 15: 902. PMID 26572484 DOI: 10.1186/s12885-015-1933-2  0.086
2015 Via LE, England K, Weiner DM, Schimel D, Zimmerman MD, Dayao E, Chen RY, Dodd LE, Richardson M, Robbins KK, Cai Y, Hammoud D, Herscovitch P, Dartois V, Flynn JL, et al. A Sterilizing Tuberculosis Treatment Regimen Is Associated with Faster Clearance of Bacteria in Cavitary Lesions in Marmosets. Antimicrobial Agents and Chemotherapy. 59: 4181-9. PMID 25941223 DOI: 10.1128/Aac.00115-15  0.085
2015 Cai Y, Liu T, Fang F, Shen S, Xiong C. Involvement of ICAM-1 in impaired spermatogenesis after busulfan treatment in mice. Andrologia. PMID 25808259 DOI: 10.1111/and.12414  0.085
2015 Vélez JI, Lopera F, Sepulveda-Falla D, Patel HR, Johar AS, Chuah A, Tobón C, Rivera D, Villegas A, Cai Y, Peng K, Arkell R, Castellanos FX, Andrews SJ, Silva Lara MF, et al. APOE*E2 allele delays age of onset in PSEN1 E280A Alzheimer's disease. Molecular Psychiatry. PMID 26619808 DOI: 10.1038/Mp.2015.177  0.085
2015 Ye Z, Hao R, Cai Y, Wang X, Huang G. Knockdown of miR-221 promotes the cisplatin-inducing apoptosis by targeting the BIM-Bax/Bak axis in breast cancer. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26503209 DOI: 10.1007/s13277-015-4267-4  0.084
2015 Gu Z, Wang B, Zhang YB, Ding H, Zhang Y, Yu J, Gu M, Chan P, Cai Y. Association of ARNTL and PER1 genes with Parkinson's disease: a case-control study of Han Chinese. Scientific Reports. 5: 15891. PMID 26507264 DOI: 10.1038/Srep15891  0.084
2015 Deng Y, Cai Y, Lin J, Jiang L, Hu H. Survival of patients with KRAS wild-type metastatic colorectal cancer is identical after sequential treatment with cetuximab and bevacizumab regardless of the sequence - A retrospective single-center study. Gastroenterology Report. PMID 26468218 DOI: 10.1093/gastro/gov051  0.083
2015 Shi J, Jiang X, Yu Z, He G, Ning H, Wu Z, Cai Y, Yu H, Chen A. ZNRF3 contributes to the growth of lung carcinoma via inhibiting Wnt/β-catenin pathway and is regulated by miR-93. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26423400 DOI: 10.1007/s13277-015-3949-2  0.083
2015 Yang H, Cai Y, Liu Q, Zhao X, Wang Q, Chen C, Xue G. Differential Neural Correlates Underlie Judgment of Learning and Subsequent Memory Performance. Frontiers in Psychology. 6: 1699. PMID 26617540 DOI: 10.3389/Fpsyg.2015.01699  0.083
2015 Hao Y, Xu X, Xu Z, Jiang N, Wu W, Jin Q, Yin S, Cai Y, Xie J. [Application of multiplex ligation-dependent probe amplification technique in prenatal diagnosis of alpha-thalassemia]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi = Zhonghua Yixue Yichuanxue Zazhi = Chinese Journal of Medical Genetics. 32: 683-686. PMID 26418992 DOI: 10.3760/cma.j.issn.1003-9406.2015.05.016  0.083
2015 Wee ZN, Yatim SM, Kohlbauer VK, Feng M, Goh JY, Yi B, Lee PL, Zhang S, Wang PP, Lim E, Tam WL, Cai Y, Ditzel HJ, Hoon DS, Tan EY, et al. IRAK1 is a therapeutic target that drives breast cancer metastasis and resistance to paclitaxel. Nature Communications. 6: 8746. PMID 26503059 DOI: 10.1038/ncomms9746  0.083
2015 Cai Y, Gu L, Chen F. [A nonlinear multi-compartment lung model for optimization of breathing airflow pattern]. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi = Journal of Biomedical Engineering = Shengwu Yixue Gongchengxue Zazhi. 32: 32-7. PMID 25997262  0.082
2020 Li R, Yang P, Li M, Fang W, Yue X, Nanaei HA, Gan S, Du D, Cai Y, Dai X, Yang Q, Cao C, Deng W, He S, Li W, et al. A Hu sheep genome with the first ovine Y chromosome reveal introgression history after sheep domestication. Science China. Life Sciences. PMID 32997330 DOI: 10.1007/s11427-020-1807-0  0.082
2015 Yin Y, Wang T, Cai YP, Huang XJ, Li YJ, Chen SH, Qin R, Wang CF, Wu Q. Microcystic/Reticular Schwannoma of the Mandible First Case Report and Review of the Literature. Medicine. 94: e1974. PMID 26559274 DOI: 10.1097/MD.0000000000001974  0.082
2015 Yi M, Tang Y, Liu B, Li Q, Zhou X, Yu S, Fu S, Cai Y, Yuan X. Genetic variants in the ITGB6 gene is associated with the risk of radiation pneumonitis in lung cancer patients treated with thoracic radiation therapy. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26449830 DOI: 10.1007/s13277-015-4171-y  0.081
2015 Wu M, Liu L, Zhou Z, Sheng H, Yin X, Li X, Cheng J, Huang Y, Cai Y, Li C, Fan L, Liu H. [Kniest dysplasia due to mutation of COL2A1 gene]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi = Zhonghua Yixue Yichuanxue Zazhi = Chinese Journal of Medical Genetics. 32: 323-6. PMID 26037341 DOI: 10.3760/cma.j.issn.1003-9406.2015.03.004  0.081
2016 Cai P, Cai Y, Chandrasekaran I, Zheng J. Parallel genetic algorithm based automatic path planning for crane lifting in complex environments Automation in Construction. 62: 133-147. DOI: 10.1016/J.Autcon.2015.09.007  0.081
2015 Tang M, Ou N, Li C, Lu A, Li J, Ma L, Zhong W, Gao J, Zheng Y, Cai Y. Expression and Prognostic Significance of Macrophage Inflammatory Protein-3 Alpha and Cystatin A in Nasopharyngeal Carcinoma. Biomed Research International. 2015: 617143. PMID 26634210 DOI: 10.1155/2015/617143  0.081
2015 Peng L, Song L, Sun L, Cai Y, Wang L, Yu B. Genome Sequence of Bacillus coagulans P38, an Efficient Polymer-Grade l-Lactate Producer from Cellulosic Substrates. Genome Announcements. 3. PMID 25999580 DOI: 10.1128/genomeA.00495-15  0.08
2015 Mao L, Li J, Chen WX, Cai YQ, Yu DD, Zhong SL, Zhao JH, Zhou JW, Tang JH. Exosomes decrease sensitivity of breast cancer cells to adriamycin by delivering microRNAs. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26555545 DOI: 10.1007/s13277-015-4402-2  0.08
2016 Chen YL, Cai Y, Shimizu Y, Ito S, Gao W, Ju BF. On-machine measurement of microtool wear and cutting edge chipping by using a diamond edge artifact Precision Engineering. 43: 462-467. DOI: 10.1016/j.precisioneng.2015.09.011  0.078
2015 Cai Y, Lee W, Kwa AL. Polymyxin B versus colistin: an update. Expert Review of Anti-Infective Therapy. 1-17. PMID 26488563 DOI: 10.1586/14787210.2015.1093933  0.078
2020 Zhang YH, Li Z, Zeng T, Chen L, Li H, Huang T, Cai YD. Detecting the Multiomics Signatures of Factor-Specific Inflammatory Effects on Airway Smooth Muscles. Frontiers in Genetics. 11: 599970. PMID 33519902 DOI: 10.3389/fgene.2020.599970  0.077
2015 Cai Y, Leck H, Lim TP, Teo J, Lee W, Hsu LY, Koh TH, Tan TT, Tan TY, Kwa AL. Using an Adenosine Triphosphate Bioluminescent Assay to Determine Effective Antibiotic Combinations against Carbapenem-Resistant Gram Negative Bacteria within 24 Hours. Plos One. 10: e0140446. PMID 26460891 DOI: 10.1371/journal.pone.0140446  0.077
2015 Cai Y, Zhao L, Qin Y, Wu XQ. EGCG Blocked Phenylephrin-Induced Hypertrophy in H9C2 Cardiomyocytes, by Activating AMPK-Dependent Pathway. The Korean Journal of Physiology & Pharmacology : Official Journal of the Korean Physiological Society and the Korean Society of Pharmacology. 19: 203-10. PMID 25954124 DOI: 10.4196/kjpp.2015.19.3.203  0.076
2015 Lv J, Wei L, Yang Y, Wang B, Liang W, Gao Y, Xia X, Gao L, Cai Y, Hou P, Yang H, Wang A, Huang R, Gao J, Chai T. Amino acid substitutions in the neuraminidase protein of an H9N2 avian influenza virus affect its airborne transmission in chickens. Veterinary Research. 46: 44. PMID 25928577 DOI: 10.1186/s13567-014-0142-3  0.076
2015 Wang L, Li YH, Cai Y, Wu AW, Gu J. Intermediate Neoadjuvant Radiotherapy Combined With Total Mesorectal Excision for Locally Advanced Rectal Cancer: Outcomes After a Median Follow-Up of 5 Years. Clinical Colorectal Cancer. PMID 26508595 DOI: 10.1016/j.clcc.2015.10.001  0.076
2016 Zhang Z, Cai YY, Zhang Y, Gu DJ, Liu YF. A Distributed Architecture Based on Microbank Modules With Self-Reconfiguration Control to Improve the Energy Efficiency in the Battery Energy Storage System Ieee Transactions On Power Electronics. 31: 304-317. DOI: 10.1109/Tpel.2015.2406773  0.075
2022 Chen L, Liao H, Huang G, Ding S, Guo W, Huang T, Cai Y. Identification of DNA Methylation Signature and Rules for SARS-CoV-2 Associated with Age. Frontiers in Bioscience (Landmark Edition). 27: 204. PMID 35866388 DOI: 10.31083/j.fbl2707204  0.075
2015 Li S, Wu Z, Chen Y, Kang Z, Wang H, He P, Zhang X, Hu T, Zhang Q, Cai Y, Xu X, Guan M. Diagnostic and prognostic value of tissue and circulating levels of Ephrin-A2 in prostate cancer. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26561474 DOI: 10.1007/s13277-015-4398-7  0.075
2015 Chen L, Huang Z, Yao G, Lyu X, Li J, Hu X, Cai Y, Li W, Li X, Ye C. The expression of CXCL13 and its relation to unfavorable clinical characteristics in young breast cancer. Journal of Translational Medicine. 13: 168. PMID 25990390 DOI: 10.1186/s12967-015-0521-1  0.073
2015 Liu Z, Zhong G, Chai PC, Luo L, Liu S, Yang Y, Baeg GH, Cai Y. Coordinated niche-associated signals promote germline homeostasis in the Drosophila ovary. The Journal of Cell Biology. 211: 469-84. PMID 26504174 DOI: 10.1083/jcb.201503033  0.073
2015 Cai Y, Edin F, Jin Z, Alexsson A, Gudjonsson O, Liu W, Rask-Andersen H, Karlsson M, Li H. Strategy towards Independent Electrical Stimulation from Cochlear Implants: Guided Auditory Neuron Growth on Topographically Modified Nanocrystalline Diamond. Acta Biomaterialia. PMID 26593784 DOI: 10.1016/j.actbio.2015.11.021  0.073
2015 Chen H, Hu Y, Xiang W, Cai Y, Wang Z, Xiao Q, Liu Y, Li Q, Ding K. Prognostic significance of matrix metalloproteinase 7 immunohistochemical expression in colorectal cancer: a meta-analysis. International Journal of Clinical and Experimental Medicine. 8: 3281-90. PMID 26064217  0.073
2015 Luo L, Wang H, Fan C, Liu S, Cai Y. Wnt ligands regulate Tkv expression to constrain Dpp activity in the Drosophila ovarian stem cell niche. The Journal of Cell Biology. 209: 595-608. PMID 26008746 DOI: 10.1083/jcb.201409142  0.072
2016 Fang X, Wang Z, Wang C, Wu J, Yang Y, Li F, Hua Y, Liu D, Cai Y, Wang R, Guan S. Cardiovascular and Cognitive Health Study in Middle-Aged and Elderly Residents of Beijing(CCHS-Beijing): Design and Rationale. Neuroepidemiology. 46: 182-190. PMID 26854473 DOI: 10.1159/000443707  0.072
2023 Li X, Liu Z, Cai Y, Yan J, Wu W, Guo G, Shao X. Monocular polarized three-dimensional absolute depth reconstruction technology for multi-target scenes. Applied Optics. 62: 5627-5635. PMID 37707178 DOI: 10.1364/AO.490003  0.071
2016 Suvansinpan N, Hussain F, Zhang G, Chiu CH, Cai Y, Zhang YW. Substitutionally doped phosphorene: electronic properties and gas sensing. Nanotechnology. 27: 065708. PMID 26762814 DOI: 10.1088/0957-4484/27/6/065708  0.07
2016 Cai Y, Wang J, Chen Y, Wang T, Tian H, Luo W. Adaptive direction information in differential evolution for numerical optimization Soft Computing. 20: 465-494. DOI: 10.1007/s00500-014-1517-0  0.07
2016 Zhao J, Cai Y, Yin C, Lv Y, Wei W, Wang X, Hao Z, Shen C, Wang H, Chen J. Study on the inhibition of hyperthermic CO2 pneumoperitoneum on the proliferation and migration of colon cancer cells and its mechanism. Oncology Reports. 35: 985-991. PMID 26718327 DOI: 10.3892/or.2015.4446  0.069
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