Damien Devos - Publications

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
Website:
http://www.embl.de/research/units/scb/bork/members/index.php?s_personId=4220

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Acemel RD, Tena JJ, Irastorza-Azcarate I, Marlétaz F, Gómez-Marín C, de la Calle-Mustienes E, Bertrand S, Diaz SG, Aldea D, Aury JM, Mangenot S, Holland PW, Devos DP, Maeso I, Escrivá H, et al. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation. Nature Genetics. PMID 26829752 DOI: 10.1038/Ng.3497  0.44
2015 Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, et al. Ten simple rules for organizing an unconference. Plos Computational Biology. 11: e1003905. PMID 25633715 DOI: 10.1371/Journal.Pcbi.1003905  0.44
2014 Devos DP, Ward NL. Mind the PVCs. Environmental Microbiology. 16: 1217-21. PMID 24750535 DOI: 10.1111/1462-2920.12349  0.44
2014 Devos DP, Gräf R, Field MC. Evolution of the nucleus. Current Opinion in Cell Biology. 28: 8-15. PMID 24508984 DOI: 10.1016/j.ceb.2014.01.004  0.44
2014 Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity. Plos Genetics. 10: e1004060. PMID 24391522 DOI: 10.1371/Journal.Pgen.1004060  0.44
2014 Devos DP. Re-interpretation of the evidence for the PVC cell plan supports a Gram-negative origin. Antonie Van Leeuwenhoek. 105: 271-4. PMID 24292377 DOI: 10.1007/s10482-013-0087-y  0.44
2014 Devos DP. PVC bacteria: variation of, but not exception to, the Gram-negative cell plan. Trends in Microbiology. 22: 14-20. PMID 24286661 DOI: 10.1016/j.tim.2013.10.008  0.44
2014 Acehan D, Santarella-Mellwig R, Devos DP. A bacterial tubulovesicular network. Journal of Cell Science. 127: 277-80. PMID 24259664 DOI: 10.1242/jcs.137596  0.44
2014 Devos DP. Structural aspects of MC proteins of PVC superphylum members Planctomycetes: Cell Structure, Origins and Biology. 77-87. DOI: 10.1007/978-1-62703-502-6_3  0.44
2013 Devos DP, Jogler C, Fuerst JA. The 1st EMBO workshop on PVC bacteria-Planctomycetes-Verrucomicrobia-Chlamydiae superphylum: exceptions to the bacterial definition? Antonie Van Leeuwenhoek. 104: 443-9. PMID 24052364 DOI: 10.1007/s10482-013-0026-y  0.44
2013 Devos DP. Gemmata obscuriglobus. Current Biology : Cb. 23: R705-7. PMID 24028944 DOI: 10.1016/j.cub.2013.07.013  0.44
2013 Santarella-Mellwig R, Pruggnaller S, Roos N, Mattaj IW, Devos DP. Three-dimensional reconstruction of bacteria with a complex endomembrane system. Plos Biology. 11: e1001565. PMID 23700385 DOI: 10.1371/journal.pbio.1001565  0.44
2012 Budd A, Devos DP. Evaluating the Evolutionary Origins of Unexpected Character Distributions within the Bacterial Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum. Frontiers in Microbiology. 3: 401. PMID 23189077 DOI: 10.3389/fmicb.2012.00401  0.44
2012 Devos DP. Regarding the presence of membrane coat proteins in bacteria: confusion? What confusion? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 38-9. PMID 22183969 DOI: 10.1002/bies.201100147  0.44
2012 Flemming D, Devos DP, Schwarz J, Amlacher S, Lutzmann M, Hurt E. Analysis of the yeast nucleoporin Nup188 reveals a conserved S-like structure with similarity to karyopherins. Journal of Structural Biology. 177: 99-105. PMID 22138091 DOI: 10.1016/J.Jsb.2011.11.008  0.44
2011 Reynaud EG, Devos DP. Transitional forms between the three domains of life and evolutionary implications. Proceedings. Biological Sciences / the Royal Society. 278: 3321-8. PMID 21920985 DOI: 10.1098/rspb.2011.1581  0.44
2011 Amlacher S, Sarges P, Flemming D, van Noort V, Kunze R, Devos DP, Arumugam M, Bork P, Hurt E. Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile. Cell. 146: 277-89. PMID 21784248 DOI: 10.1016/J.Cell.2011.06.039  0.44
2011 Al-Amoudi A, Castaño-Diez D, Devos DP, Russell RB, Johnson GT, Frangakis AS. The three-dimensional molecular structure of the desmosomal plaque. Proceedings of the National Academy of Sciences of the United States of America. 108: 6480-5. PMID 21464301 DOI: 10.1073/pnas.1019469108  0.44
2011 Dokudovskaya S, Waharte F, Schlessinger A, Pieper U, Devos DP, Cristea IM, Williams R, Salamero J, Chait BT, Sali A, Field MC, Rout MP, Dargemont C. A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae. Molecular & Cellular Proteomics : McP. 10: M110.006478. PMID 21454883 DOI: 10.1074/Mcp.M110.006478  0.44
2010 Devos DP, Reynaud EG. Evolution. Intermediate steps. Science (New York, N.Y.). 330: 1187-8. PMID 21109658 DOI: 10.1126/science.1196720  0.44
2010 Fernández-Tornero C, Böttcher B, Rashid UJ, Steuerwald U, Flörchinger B, Devos DP, Lindner D, Müller CW. Conformational flexibility of RNA polymerase III during transcriptional elongation. The Embo Journal. 29: 3762-72. PMID 20967027 DOI: 10.1038/emboj.2010.266  0.44
2010 Degrasse JA, Devos D. A functional proteomic study of the Trypanosoma brucei nuclear pore complex: an informatic strategy. Methods in Molecular Biology (Clifton, N.J.). 673: 231-8. PMID 20835803 DOI: 10.1007/978-1-60761-842-3_15  0.44
2010 Lonhienne TG, Sagulenko E, Webb RI, Lee KC, Franke J, Devos DP, Nouwens A, Carroll BJ, Fuerst JA. Endocytosis-like protein uptake in the bacterium Gemmata obscuriglobus. Proceedings of the National Academy of Sciences of the United States of America. 107: 12883-8. PMID 20566852 DOI: 10.1073/pnas.1001085107  0.44
2010 Santarella-Mellwig R, Franke J, Jaedicke A, Gorjanacz M, Bauer U, Budd A, Mattaj IW, Devos DP. The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins. Plos Biology. 8: e1000281. PMID 20087413 DOI: 10.1371/journal.pbio.1000281  0.44
2009 Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castaño-Diez D, Chen WH, Devos D, Güell M, Norambuena T, et al. Proteome organization in a genome-reduced bacterium. Science (New York, N.Y.). 326: 1235-40. PMID 19965468 DOI: 10.1126/Science.1176343  0.44
2009 DeGrasse JA, DuBois KN, Devos D, Siegel TN, Sali A, Field MC, Rout MP, Chait BT. Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor. Molecular & Cellular Proteomics : McP. 8: 2119-30. PMID 19525551 DOI: 10.1074/Mcp.M900038-Mcp200  0.44
2009 Croteau NJ, Furgason ML, Devos D, Munson M. Conservation of helical bundle structure between the exocyst subunits. Plos One. 4: e4443. PMID 19214222 DOI: 10.1371/Journal.Pone.0004443  0.44
2008 Sanchez-Pulido L, Devos D, Sung ZR, Calonje M. RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs. Bmc Genomics. 9: 308. PMID 18588675 DOI: 10.1186/1471-2164-9-308  0.44
2008 Taverner T, Hernández H, Sharon M, Ruotolo BT, Matak-Vinkovi? D, Devos D, Russell RB, Robinson CV. Subunit architecture of intact protein complexes from mass spectrometry and homology modeling. Accounts of Chemical Research. 41: 617-27. PMID 18314965 DOI: 10.1021/Ar700218Q  0.44
2007 Alber F, Dokudovskaya S, Veenhoff LM, Zhang W, Kipper J, Devos D, Suprapto A, Karni-Schmidt O, Williams R, Chait BT, Sali A, Rout MP. The molecular architecture of the nuclear pore complex. Nature. 450: 695-701. PMID 18046406 DOI: 10.1038/Nature06405  0.44
2007 Alber F, Dokudovskaya S, Veenhoff LM, Zhang W, Kipper J, Devos D, Suprapto A, Karni-Schmidt O, Williams R, Chait BT, Rout MP, Sali A. Determining the architectures of macromolecular assemblies. Nature. 450: 683-94. PMID 18046405 DOI: 10.1038/Nature06404  0.44
2007 Devos D, Russell RB. A more complete, complexed and structured interactome. Current Opinion in Structural Biology. 17: 370-7. PMID 17574831 DOI: 10.1016/J.Sbi.2007.05.011  0.44
2006 Devos D, Kalinina OV, Russell RB. Harry Potter and the structural biologist's (Key)stone. Genome Biology. 7: 333. PMID 17201936 DOI: 10.1186/Gb-2006-7-12-333  0.44
2006 Eramian D, Shen MY, Devos D, Melo F, Sali A, Marti-Renom MA. A composite score for predicting errors in protein structure models. Protein Science : a Publication of the Protein Society. 15: 1653-66. PMID 16751606 DOI: 10.1110/Ps.062095806  0.44
2006 Dokudovskaya S, Williams R, Devos D, Sali A, Chait BT, Rout MP. Protease accessibility laddering: a proteomic tool for probing protein structure. Structure (London, England : 1993). 14: 653-60. PMID 16615907 DOI: 10.1016/J.Str.2006.02.006  0.44
2006 Devos D, Dokudovskaya S, Williams R, Alber F, Eswar N, Chait BT, Rout MP, Sali A. Simple fold composition and modular architecture of the nuclear pore complex. Proceedings of the National Academy of Sciences of the United States of America. 103: 2172-7. PMID 16461911 DOI: 10.1073/Pnas.0506345103  0.44
2004 Devos D, Dokudovskaya S, Alber F, Williams R, Chait BT, Sali A, Rout MP. Components of coated vesicles and nuclear pore complexes share a common molecular architecture. Plos Biology. 2: e380. PMID 15523559 DOI: 10.1371/Journal.Pbio.0020380  0.44
2004 Blanco FJ, Yee A, Campos-Olivas R, Ortiz AR, Devos D, Valencia A, Arrowsmith CH, Rico M. Solution structure of the hypothetical protein Mth677 from Methanobacterium thermoautotrophicum: a novel alpha+beta fold. Protein Science : a Publication of the Protein Society. 13: 1458-65. PMID 15152082 DOI: 10.1110/Ps.04620504  0.44
2003 Sánchez-Pulido L, Devos D, Genevrois S, Vicente M, Valencia A. POTRA: a conserved domain in the FtsQ family and a class of beta-barrel outer membrane proteins. Trends in Biochemical Sciences. 28: 523-6. PMID 14559180 DOI: 10.1016/J.Tibs.2003.08.003  0.44
2003 Balsera M, Arellano JB, Pazos F, Devos D, Valencia A, De Las Rivas J. The single tryptophan of the PsbQ protein of photosystem II is at the end of a 4-alpha-helical bundle domain. European Journal of Biochemistry / Febs. 270: 3916-27. PMID 14511373 DOI: 10.1046/J.1432-1033.2003.03774.X  0.44
2003 Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, et al. Evaluation of annotation strategies using an entire genome sequence. Bioinformatics (Oxford, England). 19: 717-26. PMID 12691983 DOI: 10.1093/Bioinformatics/Btg077  0.44
2002 Sánchez-Pulido L, Devos D, Valencia A. BRICHOS: a conserved domain in proteins associated with dementia, respiratory distress and cancer. Trends in Biochemical Sciences. 27: 329-32. PMID 12114016 DOI: 10.1016/S0968-0004(02)02134-5  0.44
2002 Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Staerfeldt HH, Rapacki K, Workman C, Andersen CA, Knudsen S, Krogh A, Valencia A, Brunak S. Prediction of human protein function from post-translational modifications and localization features. Journal of Molecular Biology. 319: 1257-65. PMID 12079362 DOI: 10.1016/S0022-2836(02)00379-0  0.44
2002 Devos D, Garmendia J, De Lorenzo V, Valencia A. Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: A structural model of its N-terminal domain Environmental Microbiology. 4: 29-41. PMID 11966823 DOI: 10.1046/J.1462-2920.2002.00265.X  0.44
2001 Garmendia J, Devos D, Valencia A, De Lorenzo V. À la carte transcriptional regulators: Unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors Molecular Microbiology. 42: 47-59. PMID 11679066 DOI: 10.1046/J.1365-2958.2001.02633.X  0.44
2001 Devos D, Valencia A. Intrinsic errors in genome annotation Trends in Genetics. 17: 429-431. PMID 11485799 DOI: 10.1016/S0168-9525(01)02348-4  0.44
2000 Devos D, Valencia A. Practical limits of function prediction Proteins: Structure, Function and Genetics. 41: 98-107. PMID 10944397 DOI: 10.1002/1097-0134(20001001)41:1<98::Aid-Prot120>3.0.Co;2-S  0.44
1997 Melo F, Devos D, Depiereux E, Feytmans E. ANOLEA: a www server to assess protein structures Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 5: 187-190. PMID 9322034  0.44
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