Aidan Budd - Publications

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
Website:
http://www.embl.de/research/units/scb/gibson/members/index.php?s_personId=1807

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Santarella-Mellwig R, Franke J, Jaedicke A, Gorjánácz M, Bauer U, Budd A, Mattaj IW, Devos DP. Correction: The Compartmentalized Bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum Have Membrane Coat-Like Proteins. Plos Biology. 16: e1002620. PMID 29444088 DOI: 10.1371/journal.pbio.1002620  0.96
2015 Attwood TK, Atwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW. GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training. Plos Computational Biology. 11: e1004143. PMID 25856076 DOI: 10.1371/journal.pcbi.1004143  0.96
2015 Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N. A quick guide for building a successful bioinformatics community. Plos Computational Biology. 11: e1003972. PMID 25654371 DOI: 10.1371/journal.pcbi.1003972  0.96
2015 Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, et al. Ten simple rules for organizing an unconference. Plos Computational Biology. 11: e1003905. PMID 25633715 DOI: 10.1371/journal.pcbi.1003905  0.96
2015 Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, et al. The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers. Bioinformatics (Oxford, England). 31: 140-2. PMID 25189782 DOI: 10.1093/bioinformatics/btu601  0.96
2014 Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE. Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation. Chemical Reviews. 114: 6733-78. PMID 24926813 DOI: 10.1021/cr400585q  0.96
2014 Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, et al. The eukaryotic linear motif resource ELM: 10 years and counting. Nucleic Acids Research. 42: D259-66. PMID 24214962 DOI: 10.1093/nar/gkt1047  0.96
2013 Via A, Blicher T, Bongcam-Rudloff E, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, Fernandes PL, van Gelder C, Jacob J, Jimenez RC, Loveland J, Moran F, Mulder N, et al. Best practices in bioinformatics training for life scientists. Briefings in Bioinformatics. 14: 528-37. PMID 23803301 DOI: 10.1093/bib/bbt043  0.96
2013 Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, et al. iAnn: an event sharing platform for the life sciences. Bioinformatics (Oxford, England). 29: 1919-21. PMID 23742982 DOI: 10.1093/bioinformatics/btt306  0.96
2013 Fuller JC, Khoueiry P, Dinkel H, Forslund K, Stamatakis A, Barry J, Budd A, Soldatos TG, Linssen K, Rajput AM. Biggest challenges in bioinformatics. Embo Reports. 14: 302-4. PMID 23492829 DOI: 10.1038/embor.2013.34  0.96
2012 Budd A, Devos DP. Evaluating the Evolutionary Origins of Unexpected Character Distributions within the Bacterial Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum. Frontiers in Microbiology. 3: 401. PMID 23189077 DOI: 10.3389/fmicb.2012.00401  0.96
2012 Budd A. Diversity of genome organisation. Methods in Molecular Biology (Clifton, N.J.). 855: 51-76. PMID 22407705 DOI: 10.1007/978-1-61779-582-4_2  0.96
2012 Budd A. Introduction to genome biology: features, processes, and structures. Methods in Molecular Biology (Clifton, N.J.). 855: 3-49. PMID 22407704 DOI: 10.1007/978-1-61779-582-4_1  0.96
2012 Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, et al. Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Briefings in Bioinformatics. 13: 383-9. PMID 22110242 DOI: 10.1093/bib/bbr064  0.96
2012 Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, et al. ELM--the database of eukaryotic linear motifs. Nucleic Acids Research. 40: D242-51. PMID 22110040 DOI: 10.1093/nar/gkr1064  0.96
2012 Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ. Attributes of short linear motifs. Molecular Biosystems. 8: 268-81. PMID 21909575 DOI: 10.1039/c1mb05231d  0.96
2011 Lefèvre S, Dumay-Odelot H, El-Ayoubi L, Budd A, Legrand P, Pinaud N, Teichmann M, Fribourg S. Structure-function analysis of hRPC62 provides insights into RNA polymerase III transcription initiation. Nature Structural & Molecular Biology. 18: 352-8. PMID 21358628 DOI: 10.1038/nsmb.1996  0.96
2011 Ommeh S, Budd A, Ngara MV, Njaci I, de Villiers EP. Basic Molecular Evolution Workshop--A trans-African virtual training course: "Virtual Workshops": Is Africa ready to embrace the concept? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 243-7. PMID 21312200 DOI: 10.1002/bies.201000139  0.96
2011 An C, Budd A, Kanost MR, Michel K. Characterization of a regulatory unit that controls melanization and affects longevity of mosquitoes. Cellular and Molecular Life Sciences : Cmls. 68: 1929-39. PMID 20953892 DOI: 10.1007/s00018-010-0543-z  0.96
2010 Croset V, Rytz R, Cummins SF, Budd A, Brawand D, Kaessmann H, Gibson TJ, Benton R. Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction. Plos Genetics. 6: e1001064. PMID 20808886 DOI: 10.1371/journal.pgen.1001064  0.96
2010 Schneider MV, Watson J, Attwood T, Rother K, Budd A, McDowall J, Via A, Fernandes P, Nyronen T, Blicher T, Jones P, Blatter MC, De Las Rivas J, Judge DP, van der Gool W, et al. Bioinformatics training: a review of challenges, actions and support requirements. Briefings in Bioinformatics. 11: 544-51. PMID 20562256 DOI: 10.1093/bib/bbq021  0.96
2010 Gonzalez-Nunez V, Nocco V, Budd A. Characterization of drCol 15a1b: a novel component of the stem cell niche in the zebrafish retina. Stem Cells (Dayton, Ohio). 28: 1399-411. PMID 20549708 DOI: 10.1002/stem.461  0.96
2010 Santarella-Mellwig R, Franke J, Jaedicke A, Gorjanacz M, Bauer U, Budd A, Mattaj IW, Devos DP. The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins. Plos Biology. 8: e1000281. PMID 20087413 DOI: 10.1371/journal.pbio.1000281  0.96
2010 Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, et al. ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research. 38: D167-80. PMID 19920119 DOI: 10.1093/nar/gkp1016  0.96
2009 Batisse J, Batisse C, Budd A, Böttcher B, Hurt E. Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. The Journal of Biological Chemistry. 284: 34911-7. PMID 19840948 DOI: 10.1074/jbc.M109.062034  0.96
2008 Ettwiller L, Budd A, Spitz F, Wittbrodt J. Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences. Genome Biology. 9: R172. PMID 19087242 DOI: 10.1186/gb-2008-9-12-r172  0.96
2008 Deddouche S, Matt N, Budd A, Mueller S, Kemp C, Galiana-Arnoux D, Dostert C, Antoniewski C, Hoffmann JA, Imler JL. The DExD/H-box helicase Dicer-2 mediates the induction of antiviral activity in drosophila. Nature Immunology. 9: 1425-32. PMID 18953338 DOI: 10.1038/ni.1664  0.96
2008 Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ. Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Frontiers in Bioscience : a Journal and Virtual Library. 13: 6580-603. PMID 18508681  0.96
2005 Abraham EG, Pinto SB, Ghosh A, Vanlandingham DL, Budd A, Higgs S, Kafatos FC, Jacobs-Lorena M, Michel K. An immune-responsive serpin, SRPN6, mediates mosquito defense against malaria parasites. Proceedings of the National Academy of Sciences of the United States of America. 102: 16327-32. PMID 16260729 DOI: 10.1073/pnas.0508335102  0.96
2005 Michel K, Budd A, Pinto S, Gibson TJ, Kafatos FC. Anopheles gambiae SRPN2 facilitates midgut invasion by the malaria parasite Plasmodium berghei. Embo Reports. 6: 891-7. PMID 16113656 DOI: 10.1038/sj.embor.7400478  0.96
2004 Budd A, Blandin S, Levashina EA, Gibson TJ. Bacterial alpha2-macroglobulins: colonization factors acquired by horizontal gene transfer from the metazoan genome? Genome Biology. 5: R38. PMID 15186489 DOI: 10.1186/gb-2004-5-6-r38  0.96
2003 Bimpikis K, Budd A, Linding R, Gibson TJ. BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases. Nucleic Acids Research. 31: 3792-4. PMID 12824420 DOI: 10.1093/nar/gkg535  0.96
2003 Szüts D, Kitching L, Christov C, Budd A, Peak-Chew S, Krude T. RPA is an initiation factor for human chromosomal DNA replication. Nucleic Acids Research. 31: 1725-34. PMID 12626714 DOI: 10.1093/nar/gkg269  0.96
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