Eugene Wimberly Myers - Publications

Affiliations: 
HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
Area:
computational biology
Website:
http://research.janelia.org/myers/

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, ... ... Myers EW, et al. The complete sequence of a human genome. Science (New York, N.Y.). 376: 44-53. PMID 35357919 DOI: 10.1126/science.abj6987  0.349
2022 Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Bálint M, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Castilla-Rubio JC, ... ... Myers EW, et al. The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042800 DOI: 10.1073/pnas.2115635118  0.373
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Myers EW, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  0.554
2020 Jebb D, Huang Z, Pippel M, Hughes GM, Lavrichenko K, Devanna P, Winkler S, Jermiin LS, Skirmuntt EC, Katzourakis A, Burkitt-Gray L, Ray DA, Sullivan KAM, Roscito JG, Kirilenko BM, ... ... Myers EW, et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature. 583: 578-584. PMID 32699395 DOI: 10.1038/S41586-020-2486-3  0.415
2018 Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, ... ... Myers EW, et al. Author Correction: The axolotl genome and the evolution of key tissue formation regulators. Nature. PMID 29795340 DOI: 10.1038/S41586-018-0141-Z  0.302
2018 Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, ... ... Myers EW, et al. The axolotl genome and the evolution of key tissue formation regulators. Nature. PMID 29364872 DOI: 10.1038/Nature25458  0.44
2018 Grohme MA, Schloissnig S, Rozanski A, Pippel M, Young GR, Winkler S, Brandl H, Henry I, Dahl A, Powell S, Hiller M, Myers E, Rink JC. The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. Nature. PMID 29364871 DOI: 10.1038/Nature25473  0.422
2017 Teeling E, Vernes S, Davalos LM, Ray DA, Gilbert MTP, Myers E, Bat K Consortium. Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for all Living Bat Species. Annual Review of Animal Biosciences. PMID 29166127 DOI: 10.1146/Annurev-Animal-022516-022811  0.399
2016 Royer LA, Lemon WC, Chhetri RK, Wan Y, Coleman M, Myers EW, Keller PJ. Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms. Nature Biotechnology. PMID 27798562 DOI: 10.1038/Nbt.3708  0.301
2014 Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ. Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nature Methods. 11: 951-8. PMID 25042785 DOI: 10.1038/Nmeth.3036  0.322
2014 Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P. Efficient Bayesian-based multiview deconvolution. Nature Methods. 11: 645-8. PMID 24747812 DOI: 10.1038/Nmeth.2929  0.313
2013 Navlakha S, Ahammad P, Myers EW. Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging. Bmc Bioinformatics. 14: 294. PMID 24090265 DOI: 10.1186/1471-2105-14-294  0.704
2012 Jenett A, Rubin GM, Ngo TT, Shepherd D, Murphy C, Dionne H, Pfeiffer BD, Cavallaro A, Hall D, Jeter J, Iyer N, Fetter D, Hausenfluck JH, Peng H, Trautman ET, ... ... Myers EW, et al. A GAL4-driver line resource for Drosophila neurobiology. Cell Reports. 2: 991-1001. PMID 23063364 DOI: 10.1016/J.Celrep.2012.09.011  0.301
2012 Myers EW. On bioimage informatics and decoding genomes Embnet.Journal. 18: 14. DOI: 10.14806/Ej.18.A.301  0.349
2011 Qu L, Long F, Liu X, Kim S, Myers E, Peng H. Simultaneous recognition and segmentation of cells: Application in C. elegans Bioinformatics. 27: 2895-2902. PMID 21849395 DOI: 10.1093/Bioinformatics/Btr480  0.322
2011 Xie J, Zhao T, Lee T, Myers E, Peng H. Anisotropic path searching for automatic neuron reconstruction. Medical Image Analysis. 15: 680-9. PMID 21669547 DOI: 10.1016/J.Media.2011.05.013  0.31
2011 Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E. Automated reconstruction of neuronal morphology based on local geometrical and global structural models. Neuroinformatics. 9: 247-61. PMID 21547564 DOI: 10.1007/S12021-011-9120-3  0.698
2010 Peng H, Ruan Z, Long F, Simpson JH, Myers EW. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nature Biotechnology. 28: 348-53. PMID 20231818 DOI: 10.1038/Nbt.1612  0.314
2010 Lam SC, Ruan Z, Zhao T, Long F, Jenett A, Simpson J, Myers EW, Peng H. Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains. Methods (San Diego, Calif.). 50: 63-9. PMID 19698789 DOI: 10.1016/J.Ymeth.2009.08.004  0.31
2008 Peng H, Long F, Liu X, Kim SK, Myers EW. Straightening Caenorhabditis elegans images. Bioinformatics (Oxford, England). 24: 234-42. PMID 18025002 DOI: 10.1093/Bioinformatics/Btm569  0.327
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Myers E, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.411
2007 Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/Journal.Pbio.0050310  0.41
2007 Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW. Automatic image analysis for gene expression patterns of fly embryos. Bmc Cell Biology. 8: S7. PMID 17634097 DOI: 10.1186/1471-2121-8-S1-S7  0.322
2007 Mwangi MM, Wu SW, Zhou Y, Sieradzki K, de Lencastre H, Richardson P, Bruce D, Rubin E, Myers E, Siggia ED, Tomasz A. Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 104: 9451-6. PMID 17517606 DOI: 10.1073/Pnas.0609839104  0.311
2007 Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, Myers EW, Karpen GH. Improved repeat identification and masking in Dipterans. Gene. 389: 1-9. PMID 17137733 DOI: 10.1016/J.Gene.2006.09.011  0.458
2007 Landau GM, Myers E, Ziv-Ukelson M. Two algorithms for LCS Consecutive Suffix Alignment Journal of Computer and System Sciences. 73: 1095-1117. DOI: 10.1016/J.Jcss.2007.03.004  0.34
2006 Lin TH, Myers EW, Xing EP. Interpreting anonymous DNA samples from mass disasters--probabilistic forensic inference using genetic markers. Bioinformatics (Oxford, England). 22: e298-306. PMID 16873485 DOI: 10.1093/Bioinformatics/Btl200  0.309
2006 Rasmussen KR, Stoye J, Myers EW. Efficient q-gram filters for finding all epsilon-matches over a given length. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 296-308. PMID 16597241 DOI: 10.1089/Cmb.2006.13.296  0.404
2006 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y, Chen Z, Dewell SB, de Winter A, Drake J, Du L, Fierro JM, ... ... Myers EW, et al. Erratum: Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors Nature. 441: 120-120. DOI: 10.1038/Nature04726  0.382
2006 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y, Chen Z, Dewell SB, de Winter A, Drake J, Du L, Fierro JM, ... ... Myers EW, et al. Erratum: Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors Nature. 439: 502-502. DOI: 10.1038/Nature04484  0.41
2005 Myers EW. The fragment assembly string graph. Bioinformatics (Oxford, England). 21: ii79-85. PMID 16204131 DOI: 10.1093/Bioinformatics/Bti1114  0.418
2005 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, ... ... Myers EW, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 437: 376-80. PMID 16056220 DOI: 10.1038/Nature03959  0.6
2005 Sharan R, Myers EW. A motif-based framework for recognizing sequence families. Bioinformatics (Oxford, England). 21: i387-93. PMID 15961483 DOI: 10.1093/Bioinformatics/Bti1002  0.387
2005 Edgar RC, Myers EW. PILER: identification and classification of genomic repeats. Bioinformatics (Oxford, England). 21: i152-8. PMID 15961452 DOI: 10.1093/Bioinformatics/Bti1003  0.463
2004 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, ... ... Myers EW, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/Pnas.0307971100  0.772
2004 Myers E. Whole genome sequencing, comparative genomics, and systems biology Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 4.  0.313
2003 Adams MD, Sutton GG, Smith HO, Myers EW, Venter JC. The independence of our genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 100: 3025-6. PMID 16576752 DOI: 10.1073/Pnas.0637478100  0.436
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  0.448
2002 Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, et al. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biology. 3: RESEARCH0085. PMID 12537574 DOI: 10.1186/Gb-2002-3-12-Research0085  0.461
2002 Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, ... ... Myers EW, et al. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biology. 3: RESEARCH0079. PMID 12537568 DOI: 10.1186/Gb-2002-3-12-Research0079  0.463
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, ... ... Myers EW, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181  0.421
2002 Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science (New York, N.Y.). 297: 1003-7. PMID 12169732 DOI: 10.1126/Science.1072047  0.461
2002 Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (New York, N.Y.). 296: 1661-71. PMID 12040188 DOI: 10.1126/Science.1069193  0.753
2002 Myers EW, Sutton GG, Smith HO, Adams MD, Venter JC. On the sequencing and assembly of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 4145-6. PMID 11904395 DOI: 10.1073/Pnas.092136699  0.445
2002 Huson DH, Reinert K, Myers EW. The greedy path-merging algorithm for contig scaffolding Journal of the Acm. 49: 603-615. DOI: 10.1145/585265.585267  0.474
2001 Huson DH, Reinert K, Kravitz SA, Remington KA, Delcher AL, Dew IM, Flanigan M, Halpern AL, Lai Z, Mobarry CM, Sutton GG, Myers EW. Design of a compartmentalized shotgun assembler for the human genome. Bioinformatics (Oxford, England). 17: S132-9. PMID 11473002 DOI: 10.1093/Bioinformatics/17.Suppl_1.S132  0.407
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040  0.482
2000 Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, Flanigan MJ, Kravitz SA, Mobarry CM, Reinert KH, Remington KA, Anson EL, Bolanos RA, Chou HH, Jordan CM, Halpern AL, et al. A whole-genome assembly of Drosophila. Science (New York, N.Y.). 287: 2196-204. PMID 10731133 DOI: 10.1126/Science.287.5461.2196  0.735
2000 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, ... ... Myers EW, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185  0.472
1998 Sagot MF, Myers EW. Identifying satellites and periodic repetitions in biological sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 539-53. PMID 9773349 DOI: 10.1089/Cmb.1998.5.539  0.35
1998 Levy S, Compagnoni L, Myers EW, Stormo GD. Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics (Oxford, England). 14: 74-80. PMID 9520504 DOI: 10.1093/Bioinformatics/14.1.74  0.356
1998 Landau GM, Myers EW, Schmidt JP. Incremental string comparison Siam Journal On Computing. 27: 557-582. DOI: 10.1137/S0097539794264810  0.324
1997 Jain M, Myers EW. Algorithms for computing and integrating physical maps using unique probes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 449-66. PMID 9385539 DOI: 10.1089/Cmb.1997.4.449  0.528
1997 Anson EL, Myers EW. ReAligner: a program for refining DNA sequence multi-alignments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 369-83. PMID 9278066 DOI: 10.1089/Cmb.1997.4.369  0.691
1997 Weber JL, Myers EW. Human whole-genome shotgun sequencing. Genome Research. 7: 401-9. PMID 9149936 DOI: 10.1101/Gr.7.5.401  0.458
1996 Myers EW. Approximate matching of network expressions with spacers. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 3: 33-51. PMID 8697238 DOI: 10.1089/Cmb.1996.3.33  0.305
1996 Kannan SK, Myers EW. An algorithm for locating nonoverlapping regions of maximum alignment score Siam Journal On Computing. 25: 648-662. DOI: 10.1137/S0097539794262677  0.308
1995 Myers EW. Toward simplifying and accurately formulating fragment assembly. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 275-90. PMID 7497129 DOI: 10.1089/Cmb.1995.2.275  0.332
1995 Jain M, Myers EW. A note on scoring clones given a probe ordering. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 33-7. PMID 7497118 DOI: 10.1089/Cmb.1995.2.33  0.511
1995 Kececioglu JD, Myers EW. Combinatorial algorithms for DNA sequence assembly Algorithmica. 13: 7-51. DOI: 10.1007/Bf01188580  0.722
1994 Lawrence CB, Honda S, Parrott NW, Flood TC, Gu L, Zhang L, Jain M, Larson S, Myers EW. The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing. Genomics. 23: 192-201. PMID 7829071 DOI: 10.1006/Geno.1994.1477  0.577
1994 Myers EW. A sublinear algorithm for approximate keyword searching Algorithmica. 12: 345-374. DOI: 10.1007/Bf01185432  0.388
1990 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 215: 403-10. PMID 2231712 DOI: 10.1016/S0022-2836(05)80360-2  0.41
1989 Myers EW, Miller W. Approximate matching of regular expressions. Bulletin of Mathematical Biology. 51: 5-37. PMID 2706401 DOI: 10.1016/S0092-8240(89)80046-1  0.349
1988 Hall JD, Myers EW. A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Computer Applications in the Biosciences : Cabios. 4: 35-40. PMID 3383003 DOI: 10.1093/Bioinformatics/4.1.35  0.383
1988 Myers EW, Miller W. Optimal alignments in linear space. Computer Applications in the Biosciences : Cabios. 4: 11-7. PMID 3382986 DOI: 10.1093/Bioinformatics/4.1.11  0.31
1988 Miller W, Myers EW. Sequence comparison with concave weighting functions. Bulletin of Mathematical Biology. 50: 97-120. PMID 3207952 DOI: 10.1016/S0092-8240(88)80016-8  0.384
1986 Myers EW, Mount DW. Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Research. 14: 501-8. PMID 3753785 DOI: 10.1093/Nar/14.1.501  0.34
1986 Myers EW. An O(ND) difference algorithm and its variations Algorithmica. 1: 251-266. DOI: 10.1007/Bf01840446  0.347
1985 Miller W, Myers EW. A file comparison program Software: Practice and Experience. 15: 1025-1040. DOI: 10.1002/Spe.4380151102  0.326
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