Eugene Wimberly Myers - Publications

Affiliations: 
HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
Area:
computational biology
Website:
http://research.janelia.org/myers/

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Economo MN, Clack NG, Lavis LD, Gerfen CR, Svoboda K, Myers EW, Chandrashekar J. A platform for brain-wide imaging and reconstruction of individual neurons. Elife. 5. PMID 26796534 DOI: 10.7554/eLife.10566  1
2015 Wan Y, Long F, Qu L, Xiao H, Hawrylycz M, Myers EW, Peng H. BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies. Neuroinformatics. PMID 26036213 DOI: 10.1007/s12021-015-9272-7  0.36
2015 Peng H, Myers EW. Constructing 5D developing gene expression patterns without live animal imaging Biomedical Engineering Letters. 4: 338-346. DOI: 10.1007/s13534-014-0167-6  0.36
2014 Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ. Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nature Methods. 11: 951-8. PMID 25042785 DOI: 10.1038/nmeth.3036  1
2014 Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J, Mitra A, Tsien RW, Zeng H, Ascoli GA, Iannello G, ... ... Myers E, et al. Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis. Nature Communications. 5: 4342. PMID 25014658 DOI: 10.1038/ncomms5342  1
2014 Heckscher ES, Long F, Layden MJ, Chuang CH, Manning L, Richart J, Pearson JC, Crews ST, Peng H, Myers E, Doe CQ. Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience. Development (Cambridge, England). 141: 2524-32. PMID 24917506 DOI: 10.1242/dev.108720  1
2014 Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P. Efficient Bayesian-based multiview deconvolution. Nature Methods. 11: 645-8. PMID 24747812 DOI: 10.1038/nmeth.2929  1
2013 Rah JC, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD, Isaac JT. Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography. Frontiers in Neural Circuits. 7: 177. PMID 24273494 DOI: 10.3389/fncir.2013.00177  1
2013 Navlakha S, Ahammad P, Myers EW. Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging. Bmc Bioinformatics. 14: 294. PMID 24090265 DOI: 10.1186/1471-2105-14-294  1
2013 Pammer L, O'Connor DH, Hires SA, Clack NG, Huber D, Myers EW, Svoboda K. The mechanical variables underlying object localization along the axis of the whisker. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 6726-41. PMID 23595731 DOI: 10.1523/JNEUROSCI.4316-12.2013  1
2013 Amat F, Myers EW, Keller PJ. Fast and robust optical flow for time-lapse microscopy using super-voxels. Bioinformatics (Oxford, England). 29: 373-80. PMID 23242263 DOI: 10.1093/bioinformatics/bts706  1
2012 Jenett A, Rubin GM, Ngo TT, Shepherd D, Murphy C, Dionne H, Pfeiffer BD, Cavallaro A, Hall D, Jeter J, Iyer N, Fetter D, Hausenfluck JH, Peng H, Trautman ET, ... ... Myers EW, et al. A GAL4-driver line resource for Drosophila neurobiology. Cell Reports. 2: 991-1001. PMID 23063364 DOI: 10.1016/j.celrep.2012.09.011  1
2012 Clack NG, O'Connor DH, Huber D, Petreanu L, Hires A, Peron S, Svoboda K, Myers EW. Automated tracking of whiskers in videos of head fixed rodents. Plos Computational Biology. 8: e1002591. PMID 22792058 DOI: 10.1371/journal.pcbi.1002591  1
2012 Kim J, Zhao T, Petralia RS, Yu Y, Peng H, Myers E, Magee JC. mGRASP enables mapping mammalian synaptic connectivity with light microscopy. Nature Methods. 9: 96-102. PMID 22138823 DOI: 10.1038/nmeth.1784  1
2011 Qu L, Long F, Liu X, Kim S, Myers E, Peng H. Simultaneous recognition and segmentation of cells: Application in C. elegans Bioinformatics. 27: 2895-2902. PMID 21849395 DOI: 10.1093/bioinformatics/btr480  1
2011 Decker M, Jaensch S, Pozniakovsky A, Zinke A, O'Connell KF, Zachariae W, Myers E, Hyman AA. Limiting amounts of centrosome material set centrosome size in C. elegans embryos. Current Biology : Cb. 21: 1259-67. PMID 21802300 DOI: 10.1016/j.cub.2011.06.002  1
2011 Xie J, Zhao T, Lee T, Myers E, Peng H. Anisotropic path searching for automatic neuron reconstruction. Medical Image Analysis. 15: 680-9. PMID 21669547 DOI: 10.1016/j.media.2011.05.013  1
2011 Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E. Automated reconstruction of neuronal morphology based on local geometrical and global structural models. Neuroinformatics. 9: 247-61. PMID 21547564 DOI: 10.1007/s12021-011-9120-3  1
2011 Peng H, Chung P, Long F, Qu L, Jenett A, Seeds AM, Myers EW, Simpson JH. BrainAligner: 3D registration atlases of Drosophila brains. Nature Methods. 8: 493-500. PMID 21532582 DOI: 10.1038/nmeth.1602  1
2011 Peng H, Long F, Zhao T, Myers E. Proof-editing is the bottleneck of 3D neuron reconstruction: The problem and solutions Neuroinformatics. 9: 103-105. PMID 21170608 DOI: 10.1007/s12021-010-9090-x  1
2011 Liu M, Peng H, Roy-Chowdhury AK, Myers E. 3D neuron tip detection in volumetric microscopy images Proceedings - 2011 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2011. 366-371. DOI: 10.1109/BIBM.2011.126  1
2010 Xie J, Zhao T, Lee T, Myers E, Peng H. Automatic neuron tracing in volumetric microscopy images with anisotropic path searching. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 13: 472-9. PMID 20879349 DOI: 10.1007/978-3-642-15745-5_58  1
2010 Jaensch S, Decker M, Hyman AA, Myers EW. Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos. Bioinformatics (Oxford, England). 26: i13-20. PMID 20529897 DOI: 10.1093/bioinformatics/btq190  1
2010 Peng H, Ruan Z, Long F, Simpson JH, Myers EW. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nature Biotechnology. 28: 348-53. PMID 20231818 DOI: 10.1038/nbt.1612  1
2010 O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. Vibrissa-based object localization in head-fixed mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 1947-67. PMID 20130203 DOI: 10.1523/JNEUROSCI.3762-09.2010  1
2010 Lam SC, Ruan Z, Zhao T, Long F, Jenett A, Simpson J, Myers EW, Peng H. Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains. Methods (San Diego, Calif.). 50: 63-9. PMID 19698789 DOI: 10.1016/j.ymeth.2009.08.004  1
2009 Liu X, Long F, Peng H, Aerni SJ, Jiang M, Sánchez-Blanco A, Murray JI, Preston E, Mericle B, Batzoglou S, Myers EW, Kim SK. Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell. 139: 623-33. PMID 19879847 DOI: 10.1016/j.cell.2009.08.044  1
2009 Long F, Peng H, Liu X, Kim SK, Myers E. A 3D digital atlas of C. elegans and its application to single-cell analyses Nature Methods. 6: 667-672. PMID 19684595 DOI: 10.1038/nmeth.1366  1
2009 Peng H, Long F, Myers EW. VANO: a volume-object image annotation system. Bioinformatics (Oxford, England). 25: 695-7. PMID 19189978 DOI: 10.1093/bioinformatics/btp046  1
2008 Peng H, Long F, Liu X, Kim SK, Myers EW. Straightening Caenorhabditis elegans images. Bioinformatics (Oxford, England). 24: 234-42. PMID 18025002 DOI: 10.1093/bioinformatics/btm569  1
2007 Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/journal.pbio.0050310  1
2007 Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW. Automatic image analysis for gene expression patterns of fly embryos. Bmc Cell Biology. 8: S7. PMID 17634097 DOI: 10.1186/1471-2121-8-S1-S7  1
2007 Mwangi MM, Wu SW, Zhou Y, Sieradzki K, de Lencastre H, Richardson P, Bruce D, Rubin E, Myers E, Siggia ED, Tomasz A. Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 104: 9451-6. PMID 17517606 DOI: 10.1073/pnas.0609839104  1
2007 Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, Myers EW, Karpen GH. Improved repeat identification and masking in Dipterans. Gene. 389: 1-9. PMID 17137733 DOI: 10.1016/j.gene.2006.09.011  1
2007 Long F, Peng H, Myers E. Automatic segmentation of nuclei in 3D microscopy images of celegans 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 536-539. DOI: 10.1109/ISBI.2007.356907  1
2007 Peng H, Long F, Myers EW. Straightening worm images 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 292-295. DOI: 10.1109/ISBI.2007.356846  1
2007 Landau GM, Myers E, Ziv-Ukelson M. Two algorithms for LCS Consecutive Suffix Alignment Journal of Computer and System Sciences. 73: 1095-1117. DOI: 10.1016/j.jcss.2007.03.004  1
2006 Lin TH, Myers EW, Xing EP. Interpreting anonymous DNA samples from mass disasters--probabilistic forensic inference using genetic markers. Bioinformatics (Oxford, England). 22: e298-306. PMID 16873485 DOI: 10.1093/bioinformatics/btl200  1
2006 Rasmussen KR, Stoye J, Myers EW. Efficient q-gram filters for finding all epsilon-matches over a given length. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 296-308. PMID 16597241 DOI: 10.1089/cmb.2006.13.296  1
2006 Peng H, Long F, Eisen MB, Myers EW. Clustering gene expression patterns of fly embryos 2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 2006: 1144-1147.  1
2005 Myers EW. The fragment assembly string graph. Bioinformatics (Oxford, England). 21: ii79-85. PMID 16204131 DOI: 10.1093/bioinformatics/bti1114  1
2005 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, ... ... Myers EW, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 437: 376-80. PMID 16056220 DOI: 10.1038/nature03959  1
2005 Sharan R, Myers EW. A motif-based framework for recognizing sequence families. Bioinformatics (Oxford, England). 21: i387-93. PMID 15961483 DOI: 10.1093/bioinformatics/bti1002  1
2005 Edgar RC, Myers EW. PILER: identification and classification of genomic repeats. Bioinformatics (Oxford, England). 21: i152-8. PMID 15961452 DOI: 10.1093/bioinformatics/bti1003  1
2005 Rasmussen KR, Stoye J, Myers EW. Efficient q-gram filters for finding all ε-matches over a given length Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500: 189-203.  1
2004 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, ... ... Myers EW, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/pnas.0307971100  1
2004 Peng H, Myers EW. Comparing In situ mRNA Expression Patterns of Drosophila Embryos Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 157-166.  1
2004 Myers E. Whole genome sequencing, comparative genomics, and systems biology Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 4.  1
2003 Adams MD, Sutton GG, Smith HO, Myers EW, Venter JC. The independence of our genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 100: 3025-6. PMID 16576752 DOI: 10.1073/pnas.0637478100  1
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  1
2003 Myers EW. Preface: Special RECOMB 2002 Issue Journal of Computational Biology. 10: 237. DOI: 10.1089/10665270360687995  1
2002 Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, et al. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biology. 3: RESEARCH0085. PMID 12537574  1
2002 Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, ... ... Myers EW, et al. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biology. 3: RESEARCH0079. PMID 12537568  1
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, ... ... Myers EW, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/science.1076181  0.56
2002 Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science (New York, N.Y.). 297: 1003-7. PMID 12169732 DOI: 10.1126/science.1072047  1
2002 Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (New York, N.Y.). 296: 1661-71. PMID 12040188 DOI: 10.1126/science.1069193  1
2002 Myers EW, Sutton GG, Smith HO, Adams MD, Venter JC. On the sequencing and assembly of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 4145-6. PMID 11904395 DOI: 10.1073/pnas.092136699  1
2002 Huson DH, Reinert K, Myers EW. The greedy path-merging algorithm for contig scaffolding Journal of the Acm. 49: 603-615. DOI: 10.1145/585265.585267  1
2001 Huson DH, Reinert K, Kravitz SA, Remington KA, Delcher AL, Dew IM, Flanigan M, Halpern AL, Lai Z, Mobarry CM, Sutton GG, Myers EW. Design of a compartmentalized shotgun assembler for the human genome. Bioinformatics (Oxford, England). 17: S132-9. PMID 11473002  1
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/science.1058040  1
2001 Huson DH, Reinert K, Myers E. The greedy path-merging algorithm for sequence assembly Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 157-163.  1
2000 Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, Flanigan MJ, Kravitz SA, Mobarry CM, Reinert KH, Remington KA, Anson EL, Bolanos RA, Chou HH, Jordan CM, Halpern AL, et al. A whole-genome assembly of Drosophila. Science (New York, N.Y.). 287: 2196-204. PMID 10731133 DOI: 10.1126/science.287.5461.2196  1
1998 Sagot MF, Myers EW. Identifying satellites and periodic repetitions in biological sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 539-53. PMID 9773349  1
1998 Levy S, Compagnoni L, Myers EW, Stormo GD. Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics (Oxford, England). 14: 74-80. PMID 9520504  1
1998 Myers EW, Oliva P, Guimares K. Reporting exact and approximate regular expression matches Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1448: 91-103.  1
1998 Landau GM, Myers EW, Schmidt JP. Incremental string comparison Siam Journal On Computing. 27: 557-582.  1
1998 Sagot MF, Myers EW. Identifying satellites in nucleic acid sequences Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 234-242.  1
1997 Jain M, Myers EW. Algorithms for computing and integrating physical maps using unique probes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 449-66. PMID 9385539  1
1997 Anson EL, Myers EW. ReAligner: a program for refining DNA sequence multi-alignments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 369-83. PMID 9278066  1
1997 Weber JL, Myers EW. Human whole-genome shotgun sequencing. Genome Research. 7: 401-9. PMID 9149936  1
1996 Myers EW. Approximate matching of network expressions with spacers. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 3: 33-51. PMID 8697238  1
1996 Kannan SK, Myers EW. An algorithm for locating nonoverlapping regions of maximum alignment score Siam Journal On Computing. 25: 648-662.  1
1995 Myers EW. Toward simplifying and accurately formulating fragment assembly. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 275-90. PMID 7497129  1
1995 Jain M, Myers EW. A note on scoring clones given a probe ordering. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 33-7. PMID 7497118  1
1995 Knight JR, Myers EW. Approximate regular expression pattern matching with concave gap penalties Algorithmica. 14: 85-121. DOI: 10.1007/BF01300375  1
1995 Knight JR, Myers EW. Super-pattern matching Algorithmica. 13: 211-243. DOI: 10.1007/BF01188587  1
1995 Kececioglu JD, Myers EW. Combinatorial algorithms for DNA sequence assembly Algorithmica. 13: 7-51. DOI: 10.1007/BF01188580  1
1995 Myers EW. Guest Editor's foreword Algorithmica. 13: 1-6. DOI: 10.1007/BF01188579  1
1994 Lawrence CB, Honda S, Parrott NW, Flood TC, Gu L, Zhang L, Jain M, Larson S, Myers EW. The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing. Genomics. 23: 192-201. PMID 7829071 DOI: 10.1006/geno.1994.1477  1
1994 Myers EW. A sublinear algorithm for approximate keyword searching Algorithmica. 12: 345-374. DOI: 10.1007/BF01185432  1
1992 Myers EW, Huang X. An O (N2 log N) restriction map comparison and search algorithm. Bulletin of Mathematical Biology. 54: 599-618. PMID 1591534 DOI: 10.1007/BF02459636  1
1990 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 215: 403-10. PMID 2231712 DOI: 10.1016/S0022-2836(05)80360-2  1
1989 Myers EW, Miller W. Approximate matching of regular expressions. Bulletin of Mathematical Biology. 51: 5-37. PMID 2706401 DOI: 10.1007/BF02458834  1
1988 Hall JD, Myers EW. A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Computer Applications in the Biosciences : Cabios. 4: 35-40. PMID 3383003 DOI: 10.1093/bioinformatics/4.1.35  1
1988 Myers EW, Miller W. Optimal alignments in linear space. Computer Applications in the Biosciences : Cabios. 4: 11-7. PMID 3382986  1
1988 Miller W, Myers EW. Sequence comparison with concave weighting functions. Bulletin of Mathematical Biology. 50: 97-120. PMID 3207952 DOI: 10.1007/BF02459948  1
1986 Myers EW, Mount DW. Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Research. 14: 501-8. PMID 3753785 DOI: 10.1093/nar/14.1.501  1
1986 Myers EW. An O(ND) difference algorithm and its variations Algorithmica. 1: 251-266. DOI: 10.1007/BF01840446  1
1983 Myers EW. An applicative random-access stack Information Processing Letters. 17: 241-248. DOI: 10.1016/0020-0190(83)90106-0  1
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