Eugene Wimberly Myers - Publications

Affiliations: 
HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
Area:
computational biology
Website:
http://research.janelia.org/myers/

70/156 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, ... ... Myers EW, et al. The complete sequence of a human genome. Science (New York, N.Y.). 376: 44-53. PMID 35357919 DOI: 10.1126/science.abj6987  0.346
2022 Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Bálint M, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Castilla-Rubio JC, ... ... Myers EW, et al. The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042800 DOI: 10.1073/pnas.2115635118  0.368
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Myers EW, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  0.549
2020 Jebb D, Huang Z, Pippel M, Hughes GM, Lavrichenko K, Devanna P, Winkler S, Jermiin LS, Skirmuntt EC, Katzourakis A, Burkitt-Gray L, Ray DA, Sullivan KAM, Roscito JG, Kirilenko BM, ... ... Myers EW, et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature. 583: 578-584. PMID 32699395 DOI: 10.1038/S41586-020-2486-3  0.413
2018 Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, ... ... Myers EW, et al. Author Correction: The axolotl genome and the evolution of key tissue formation regulators. Nature. PMID 29795340 DOI: 10.1038/S41586-018-0141-Z  0.302
2018 Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, ... ... Myers EW, et al. The axolotl genome and the evolution of key tissue formation regulators. Nature. PMID 29364872 DOI: 10.1038/Nature25458  0.439
2018 Grohme MA, Schloissnig S, Rozanski A, Pippel M, Young GR, Winkler S, Brandl H, Henry I, Dahl A, Powell S, Hiller M, Myers E, Rink JC. The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. Nature. PMID 29364871 DOI: 10.1038/Nature25473  0.421
2017 Teeling E, Vernes S, Davalos LM, Ray DA, Gilbert MTP, Myers E, Bat K Consortium. Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for all Living Bat Species. Annual Review of Animal Biosciences. PMID 29166127 DOI: 10.1146/Annurev-Animal-022516-022811  0.398
2016 Royer LA, Lemon WC, Chhetri RK, Wan Y, Coleman M, Myers EW, Keller PJ. Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms. Nature Biotechnology. PMID 27798562 DOI: 10.1038/Nbt.3708  0.301
2014 Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ. Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nature Methods. 11: 951-8. PMID 25042785 DOI: 10.1038/Nmeth.3036  0.323
2014 Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P. Efficient Bayesian-based multiview deconvolution. Nature Methods. 11: 645-8. PMID 24747812 DOI: 10.1038/Nmeth.2929  0.313
2013 Navlakha S, Ahammad P, Myers EW. Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging. Bmc Bioinformatics. 14: 294. PMID 24090265 DOI: 10.1186/1471-2105-14-294  0.704
2012 Jenett A, Rubin GM, Ngo TT, Shepherd D, Murphy C, Dionne H, Pfeiffer BD, Cavallaro A, Hall D, Jeter J, Iyer N, Fetter D, Hausenfluck JH, Peng H, Trautman ET, ... ... Myers EW, et al. A GAL4-driver line resource for Drosophila neurobiology. Cell Reports. 2: 991-1001. PMID 23063364 DOI: 10.1016/J.Celrep.2012.09.011  0.301
2012 Myers EW. On bioimage informatics and decoding genomes Embnet.Journal. 18: 14. DOI: 10.14806/Ej.18.A.301  0.349
2011 Qu L, Long F, Liu X, Kim S, Myers E, Peng H. Simultaneous recognition and segmentation of cells: Application in C. elegans Bioinformatics. 27: 2895-2902. PMID 21849395 DOI: 10.1093/Bioinformatics/Btr480  0.323
2011 Xie J, Zhao T, Lee T, Myers E, Peng H. Anisotropic path searching for automatic neuron reconstruction. Medical Image Analysis. 15: 680-9. PMID 21669547 DOI: 10.1016/J.Media.2011.05.013  0.31
2011 Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E. Automated reconstruction of neuronal morphology based on local geometrical and global structural models. Neuroinformatics. 9: 247-61. PMID 21547564 DOI: 10.1007/S12021-011-9120-3  0.698
2010 Peng H, Ruan Z, Long F, Simpson JH, Myers EW. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nature Biotechnology. 28: 348-53. PMID 20231818 DOI: 10.1038/Nbt.1612  0.315
2010 Lam SC, Ruan Z, Zhao T, Long F, Jenett A, Simpson J, Myers EW, Peng H. Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains. Methods (San Diego, Calif.). 50: 63-9. PMID 19698789 DOI: 10.1016/J.Ymeth.2009.08.004  0.31
2008 Peng H, Long F, Liu X, Kim SK, Myers EW. Straightening Caenorhabditis elegans images. Bioinformatics (Oxford, England). 24: 234-42. PMID 18025002 DOI: 10.1093/Bioinformatics/Btm569  0.327
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Myers E, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.409
2007 Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/Journal.Pbio.0050310  0.408
2007 Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW. Automatic image analysis for gene expression patterns of fly embryos. Bmc Cell Biology. 8: S7. PMID 17634097 DOI: 10.1186/1471-2121-8-S1-S7  0.322
2007 Mwangi MM, Wu SW, Zhou Y, Sieradzki K, de Lencastre H, Richardson P, Bruce D, Rubin E, Myers E, Siggia ED, Tomasz A. Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 104: 9451-6. PMID 17517606 DOI: 10.1073/Pnas.0609839104  0.31
2007 Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, Myers EW, Karpen GH. Improved repeat identification and masking in Dipterans. Gene. 389: 1-9. PMID 17137733 DOI: 10.1016/J.Gene.2006.09.011  0.456
2007 Landau GM, Myers E, Ziv-Ukelson M. Two algorithms for LCS Consecutive Suffix Alignment Journal of Computer and System Sciences. 73: 1095-1117. DOI: 10.1016/J.Jcss.2007.03.004  0.34
2006 Lin TH, Myers EW, Xing EP. Interpreting anonymous DNA samples from mass disasters--probabilistic forensic inference using genetic markers. Bioinformatics (Oxford, England). 22: e298-306. PMID 16873485 DOI: 10.1093/Bioinformatics/Btl200  0.309
2006 Rasmussen KR, Stoye J, Myers EW. Efficient q-gram filters for finding all epsilon-matches over a given length. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 296-308. PMID 16597241 DOI: 10.1089/Cmb.2006.13.296  0.403
2006 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y, Chen Z, Dewell SB, de Winter A, Drake J, Du L, Fierro JM, ... ... Myers EW, et al. Erratum: Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors Nature. 441: 120-120. DOI: 10.1038/Nature04726  0.381
2006 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y, Chen Z, Dewell SB, de Winter A, Drake J, Du L, Fierro JM, ... ... Myers EW, et al. Erratum: Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors Nature. 439: 502-502. DOI: 10.1038/Nature04484  0.408
2005 Myers EW. The fragment assembly string graph. Bioinformatics (Oxford, England). 21: ii79-85. PMID 16204131 DOI: 10.1093/Bioinformatics/Bti1114  0.417
2005 Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, ... ... Myers EW, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 437: 376-80. PMID 16056220 DOI: 10.1038/Nature03959  0.599
2005 Sharan R, Myers EW. A motif-based framework for recognizing sequence families. Bioinformatics (Oxford, England). 21: i387-93. PMID 15961483 DOI: 10.1093/Bioinformatics/Bti1002  0.387
2005 Edgar RC, Myers EW. PILER: identification and classification of genomic repeats. Bioinformatics (Oxford, England). 21: i152-8. PMID 15961452 DOI: 10.1093/Bioinformatics/Bti1003  0.462
2004 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, ... ... Myers EW, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/Pnas.0307971100  0.77
2004 Myers E. Whole genome sequencing, comparative genomics, and systems biology Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 4.  0.31
2003 Adams MD, Sutton GG, Smith HO, Myers EW, Venter JC. The independence of our genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 100: 3025-6. PMID 16576752 DOI: 10.1073/Pnas.0637478100  0.435
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  0.447
2002 Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, et al. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biology. 3: RESEARCH0085. PMID 12537574 DOI: 10.1186/Gb-2002-3-12-Research0085  0.459
2002 Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, ... ... Myers EW, et al. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biology. 3: RESEARCH0079. PMID 12537568 DOI: 10.1186/Gb-2002-3-12-Research0079  0.462
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, ... ... Myers EW, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181  0.42
2002 Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science (New York, N.Y.). 297: 1003-7. PMID 12169732 DOI: 10.1126/Science.1072047  0.459
2002 Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (New York, N.Y.). 296: 1661-71. PMID 12040188 DOI: 10.1126/Science.1069193  0.75
2002 Myers EW, Sutton GG, Smith HO, Adams MD, Venter JC. On the sequencing and assembly of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 4145-6. PMID 11904395 DOI: 10.1073/Pnas.092136699  0.443
2002 Huson DH, Reinert K, Myers EW. The greedy path-merging algorithm for contig scaffolding Journal of the Acm. 49: 603-615. DOI: 10.1145/585265.585267  0.472
2001 Huson DH, Reinert K, Kravitz SA, Remington KA, Delcher AL, Dew IM, Flanigan M, Halpern AL, Lai Z, Mobarry CM, Sutton GG, Myers EW. Design of a compartmentalized shotgun assembler for the human genome. Bioinformatics (Oxford, England). 17: S132-9. PMID 11473002 DOI: 10.1093/Bioinformatics/17.Suppl_1.S132  0.405
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040  0.48
2000 Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, Flanigan MJ, Kravitz SA, Mobarry CM, Reinert KH, Remington KA, Anson EL, Bolanos RA, Chou HH, Jordan CM, Halpern AL, et al. A whole-genome assembly of Drosophila. Science (New York, N.Y.). 287: 2196-204. PMID 10731133 DOI: 10.1126/Science.287.5461.2196  0.734
2000 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, ... ... Myers EW, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185  0.471
1998 Sagot MF, Myers EW. Identifying satellites and periodic repetitions in biological sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 539-53. PMID 9773349 DOI: 10.1089/Cmb.1998.5.539  0.349
1998 Levy S, Compagnoni L, Myers EW, Stormo GD. Xlandscape: the graphical display of word frequencies in sequences. Bioinformatics (Oxford, England). 14: 74-80. PMID 9520504 DOI: 10.1093/Bioinformatics/14.1.74  0.356
1998 Landau GM, Myers EW, Schmidt JP. Incremental string comparison Siam Journal On Computing. 27: 557-582. DOI: 10.1137/S0097539794264810  0.324
1997 Jain M, Myers EW. Algorithms for computing and integrating physical maps using unique probes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 449-66. PMID 9385539 DOI: 10.1089/Cmb.1997.4.449  0.528
1997 Anson EL, Myers EW. ReAligner: a program for refining DNA sequence multi-alignments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 369-83. PMID 9278066 DOI: 10.1089/Cmb.1997.4.369  0.691
1997 Weber JL, Myers EW. Human whole-genome shotgun sequencing. Genome Research. 7: 401-9. PMID 9149936 DOI: 10.1101/Gr.7.5.401  0.456
1996 Myers EW. Approximate matching of network expressions with spacers. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 3: 33-51. PMID 8697238 DOI: 10.1089/Cmb.1996.3.33  0.305
1996 Kannan SK, Myers EW. An algorithm for locating nonoverlapping regions of maximum alignment score Siam Journal On Computing. 25: 648-662. DOI: 10.1137/S0097539794262677  0.308
1995 Myers EW. Toward simplifying and accurately formulating fragment assembly. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 275-90. PMID 7497129 DOI: 10.1089/Cmb.1995.2.275  0.331
1995 Jain M, Myers EW. A note on scoring clones given a probe ordering. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 33-7. PMID 7497118 DOI: 10.1089/Cmb.1995.2.33  0.511
1995 Kececioglu JD, Myers EW. Combinatorial algorithms for DNA sequence assembly Algorithmica. 13: 7-51. DOI: 10.1007/Bf01188580  0.719
1994 Lawrence CB, Honda S, Parrott NW, Flood TC, Gu L, Zhang L, Jain M, Larson S, Myers EW. The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing. Genomics. 23: 192-201. PMID 7829071 DOI: 10.1006/Geno.1994.1477  0.576
1994 Myers EW. A sublinear algorithm for approximate keyword searching Algorithmica. 12: 345-374. DOI: 10.1007/Bf01185432  0.388
1990 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 215: 403-10. PMID 2231712 DOI: 10.1016/S0022-2836(05)80360-2  0.41
1989 Myers EW, Miller W. Approximate matching of regular expressions. Bulletin of Mathematical Biology. 51: 5-37. PMID 2706401 DOI: 10.1016/S0092-8240(89)80046-1  0.349
1988 Hall JD, Myers EW. A software tool for finding locally optimal alignments in protein and nucleic acid sequences. Computer Applications in the Biosciences : Cabios. 4: 35-40. PMID 3383003 DOI: 10.1093/Bioinformatics/4.1.35  0.383
1988 Myers EW, Miller W. Optimal alignments in linear space. Computer Applications in the Biosciences : Cabios. 4: 11-7. PMID 3382986 DOI: 10.1093/Bioinformatics/4.1.11  0.31
1988 Miller W, Myers EW. Sequence comparison with concave weighting functions. Bulletin of Mathematical Biology. 50: 97-120. PMID 3207952 DOI: 10.1016/S0092-8240(88)80016-8  0.384
1986 Myers EW, Mount DW. Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences. Nucleic Acids Research. 14: 501-8. PMID 3753785 DOI: 10.1093/Nar/14.1.501  0.34
1986 Myers EW. An O(ND) difference algorithm and its variations Algorithmica. 1: 251-266. DOI: 10.1007/Bf01840446  0.347
1985 Miller W, Myers EW. A file comparison program Software: Practice and Experience. 15: 1025-1040. DOI: 10.1002/Spe.4380151102  0.326
Low-probability matches (unlikely to be authored by this person)
2023 Uliano-Silva M, Ferreira JGRN, Krasheninnikova K, Formenti G, Abueg L, Torrance J, Myers EW, Durbin R, Blaxter M, McCarthy SA. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. Bmc Bioinformatics. 24: 288. PMID 37464285 DOI: 10.1186/s12859-023-05385-y  0.299
2013 Amat F, Myers EW, Keller PJ. Fast and robust optical flow for time-lapse microscopy using super-voxels. Bioinformatics (Oxford, England). 29: 373-80. PMID 23242263 DOI: 10.1093/Bioinformatics/Bts706  0.299
2014 Heckscher ES, Long F, Layden MJ, Chuang CH, Manning L, Richart J, Pearson JC, Crews ST, Peng H, Myers E, Doe CQ. Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience. Development (Cambridge, England). 141: 2524-32. PMID 24917506 DOI: 10.1242/Dev.108720  0.299
1995 Wu S, Manber U, Myers E. A Subquadratic Algorithm for Approximate Regular Expression Matching Journal of Algorithms. 19: 346-360. DOI: 10.1006/Jagm.1995.1041  0.298
2023 Uvizl M, Puechmaille SJ, Power S, Pippel M, Carthy S, Haerty W, Myers EW, Teeling EC, Huang Z. Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. Molecular Biology and Evolution. PMID 38124445 DOI: 10.1093/molbev/msad278  0.296
2009 Peng H, Long F, Myers EW. VANO: a volume-object image annotation system. Bioinformatics (Oxford, England). 25: 695-7. PMID 19189978 DOI: 10.1093/Bioinformatics/Btp046  0.295
2014 Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J, Mitra A, Tsien RW, Zeng H, Ascoli GA, Iannello G, ... ... Myers E, et al. Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis. Nature Communications. 5: 4342. PMID 25014658 DOI: 10.1038/Ncomms5342  0.288
2015 Royer LA, Weigert M, Günther U, Maghelli N, Jug F, Sbalzarini IF, Myers EW. ClearVolume: open-source live 3D visualization for light-sheet microscopy. Nature Methods. 12: 480-1. PMID 26020498 DOI: 10.1038/Nmeth.3372  0.288
2015 Peng H, Myers EW. Constructing 5D developing gene expression patterns without live animal imaging Biomedical Engineering Letters. 4: 338-346. DOI: 10.1007/S13534-014-0167-6  0.287
2001 Huson DH, Reinert K, Myers E. The greedy path-merging algorithm for sequence assembly Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 157-163.  0.287
1995 Knight JR, Myers EW. Super-pattern matching Algorithmica. 13: 211-243. DOI: 10.1007/Bf01188587  0.286
2016 Economo MN, Clack NG, Lavis LD, Gerfen CR, Svoboda K, Myers EW, Chandrashekar J. A platform for brain-wide imaging and reconstruction of individual neurons. Elife. 5. PMID 26796534 DOI: 10.7554/Elife.10566  0.284
2018 Weigert M, Schmidt U, Boothe T, Müller A, Dibrov A, Jain A, Wilhelm B, Schmidt D, Broaddus C, Culley S, Rocha-Martins M, Segovia-Miranda F, Norden C, Henriques R, Zerial M, ... ... Myers EW, et al. Content-aware image restoration: pushing the limits of fluorescence microscopy. Nature Methods. PMID 30478326 DOI: 10.1038/S41592-018-0216-7  0.284
2015 Wan Y, Long F, Qu L, Xiao H, Hawrylycz M, Myers EW, Peng H. BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies. Neuroinformatics. PMID 26036213 DOI: 10.1007/S12021-015-9272-7  0.284
2010 Jaensch S, Decker M, Hyman AA, Myers EW. Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos. Bioinformatics (Oxford, England). 26: i13-20. PMID 20529897 DOI: 10.1093/Bioinformatics/Btq190  0.284
1992 Myers EW, Huang X. An O (N2 log N) restriction map comparison and search algorithm. Bulletin of Mathematical Biology. 54: 599-618. PMID 1591534 DOI: 10.1016/S0092-8240(05)80078-3  0.284
2015 Stapel LC, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL. Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos. Development (Cambridge, England). PMID 26700682 DOI: 10.1242/Jcs.186973  0.283
2015 Smith CS, Preibisch S, Joseph A, Abrahamsson S, Rieger B, Myers E, Singer RH, Grunwald D. Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking. The Journal of Cell Biology. 209: 609-19. PMID 26008747 DOI: 10.1083/Jcb.201411032  0.28
2015 Economo MN, Clack NG, Lavis LD, Gerfen CR, Svoboda K, Myers EW, Chandrashekar J. Author response: A platform for brain-wide imaging and reconstruction of individual neurons Elife. DOI: 10.7554/Elife.10566.023  0.277
1985 Myers EW. An $O(E\log E + I)$ Expected Time Algorithm for the Planar Segment Intersection Problem Siam Journal On Computing. 14: 625-637. DOI: 10.1137/0214046  0.277
2022 Takeuchi T, Suzuki Y, Watabe S, Nagai K, Masaoka T, Fujie M, Kawamitsu M, Satoh N, Myers EW. A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 29. PMID 36351462 DOI: 10.1093/dnares/dsac035  0.276
2012 Clack NG, O'Connor DH, Huber D, Petreanu L, Hires A, Peron S, Svoboda K, Myers EW. Automated tracking of whiskers in videos of head fixed rodents. Plos Computational Biology. 8: e1002591. PMID 22792058 DOI: 10.1371/Journal.Pcbi.1002591  0.276
2020 Saha D, Schmidt U, Zhang Q, Barbotin A, Hu Q, Ji N, Booth MJ, Weigert M, Myers EW. Practical sensorless aberration estimation for 3D microscopy with deep learning. Optics Express. 28: 29044-29053. PMID 33114810 DOI: 10.1364/Oe.401933  0.273
2017 Boothe T, Hilbert L, Heide M, Berninger L, Huttner WB, Zaburdaev V, Vastenhouw NL, Myers EW, Drechsel DN, Rink JC. A tunable refractive index matching medium for live imaging cells, tissues and model organisms. Elife. 6. PMID 28708059 DOI: 10.7554/Elife.27240  0.273
2020 Suzuki Y, Myers EW, Morishita S. Rapid and ongoing evolution of repetitive sequence structures in human centromeres. Science Advances. 6. PMID 33310858 DOI: 10.1126/sciadv.abd9230  0.269
1995 Knight JR, Myers EW. Approximate regular expression pattern matching with concave gap penalties Algorithmica. 14: 85-121. DOI: 10.1007/Bf01300375  0.268
2009 Liu X, Long F, Peng H, Aerni SJ, Jiang M, Sánchez-Blanco A, Murray JI, Preston E, Mericle B, Batzoglou S, Myers EW, Kim SK. Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell. 139: 623-33. PMID 19879847 DOI: 10.1016/J.Cell.2009.08.044  0.267
2011 Peng H, Long F, Zhao T, Myers E. Proof-editing is the bottleneck of 3D neuron reconstruction: The problem and solutions Neuroinformatics. 9: 103-105. PMID 21170608 DOI: 10.1007/S12021-010-9090-X  0.266
2012 Myers EW. Advances in Sequence Assembly Automated Dna Sequencing and Analysis. 231-238. DOI: 10.1016/B978-0-08-092639-1.50036-8  0.264
2017 Blasse C, Saalfeld S, Etournay R, Sagner A, Eaton S, Myers EW. PreMosa: Extracting 2D surfaces from 3D microscopy mosaics. Bioinformatics (Oxford, England). PMID 28383656 DOI: 10.1093/Bioinformatics/Btx195  0.263
1988 Miller W, Myers EW. A simple row-replacement method Software: Practice and Experience. 18: 597-611. DOI: 10.1002/Spe.4380180703  0.258
1987 Fraser CW, Myers EW. An editor for revision control Acm Transactions On Programming Languages and Systems. 9: 277-295. DOI: 10.1145/22719.22948  0.257
2017 Boothe T, Hilbert L, Heide M, Berninger L, Huttner WB, Zaburdaev V, Vastenhouw NL, Myers EW, Drechsel DN, Rink JC. Author response: A tunable refractive index matching medium for live imaging cells, tissues and model organisms Elife. DOI: 10.7554/Elife.27240.022  0.254
2019 Haase R, Royer LA, Steinbach P, Schmidt D, Dibrov A, Schmidt U, Weigert M, Maghelli N, Tomancak P, Jug F, Myers EW. CLIJ: GPU-accelerated image processing for everyone. Nature Methods. PMID 31740823 DOI: 10.1038/S41592-019-0650-1  0.253
2011 Decker M, Jaensch S, Pozniakovsky A, Zinke A, O'Connell KF, Zachariae W, Myers E, Hyman AA. Limiting amounts of centrosome material set centrosome size in C. elegans embryos. Current Biology : Cb. 21: 1259-67. PMID 21802300 DOI: 10.1016/J.Cub.2011.06.002  0.252
1978 Gabow HN, Myers EW. Finding All Spanning Trees of Directed and Undirected Graphs Siam Journal On Computing. 7: 280-287. DOI: 10.1137/0207024  0.252
2022 Formenti G, Rhie A, Walenz BP, Thibaud-Nissen F, Shafin K, Koren S, Myers EW, Jarvis ED, Phillippy AM. Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation. Nature Methods. PMID 35361932 DOI: 10.1038/s41592-022-01445-y  0.252
2012 Kim J, Zhao T, Petralia RS, Yu Y, Peng H, Myers E, Magee JC. mGRASP enables mapping mammalian synaptic connectivity with light microscopy. Nature Methods. 9: 96-102. PMID 22138823 DOI: 10.1038/Nmeth.1784  0.252
2021 Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, ... ... Myers E, et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biology. 22: 120. PMID 33910595 DOI: 10.1186/s13059-021-02336-9  0.25
2019 Subramanian K, Weigert M, Borsch O, Petzold H, Garcia-Ulloa A, Myers EW, Ader M, Solovei I, Kreysing M. Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice. Elife. 8. PMID 31825309 DOI: 10.7554/Elife.49542  0.246
2017 Dye NA, Popović M, Spannl S, Etournay R, Kainmüller D, Ghosh S, Myers EW, Jülicher F, Eaton S. Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc. Development (Cambridge, England). PMID 29038308 DOI: 10.1242/Dev.155069  0.245
2018 Weigert M, Subramanian K, Bundschuh ST, Myers EW, Kreysing M. Biobeam-Multiplexed wave-optical simulations of light-sheet microscopy. Plos Computational Biology. 14: e1006079. PMID 29652879 DOI: 10.1371/Journal.Pcbi.1006079  0.244
2011 Peng H, Chung P, Long F, Qu L, Jenett A, Seeds AM, Myers EW, Simpson JH. BrainAligner: 3D registration atlases of Drosophila brains. Nature Methods. 8: 493-500. PMID 21532582 DOI: 10.1038/Nmeth.1602  0.241
2013 Rah JC, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD, Isaac JT. Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography. Frontiers in Neural Circuits. 7: 177. PMID 24273494 DOI: 10.3389/Fncir.2013.00177  0.236
2018 Sui L, Alt S, Weigert M, Dye N, Eaton S, Jug F, Myers EW, Jülicher F, Salbreux G, Dahmann C. Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms. Nature Communications. 9: 4620. PMID 30397306 DOI: 10.1038/S41467-018-06497-3  0.234
2019 Anikeeva P, Boyden E, Brangwynne C, Cissé II, Fiehn O, Fromme P, Gingras AC, Greene CS, Heard E, Hell SW, Hillman E, Jensen GJ, Karchin R, Kiessling LL, Kleinstiver BP, ... ... Myers EW, et al. Voices in methods development. Nature Methods. 16: 945-951. PMID 31562479 DOI: 10.1038/S41592-019-0585-6  0.231
2020 Kautt AF, Kratochwil CF, Nater A, Machado-Schiaffino G, Olave M, Henning F, Torres-Dowdall J, Härer A, Hulsey CD, Franchini P, Pippel M, Myers EW, Meyer A. Contrasting signatures of genomic divergence during sympatric speciation. Nature. PMID 33116308 DOI: 10.1038/s41586-020-2845-0  0.227
2010 O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. Vibrissa-based object localization in head-fixed mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 1947-67. PMID 20130203 DOI: 10.1523/Jneurosci.3762-09.2010  0.224
2013 Pammer L, O'Connor DH, Hires SA, Clack NG, Huber D, Myers EW, Svoboda K. The mechanical variables underlying object localization along the axis of the whisker. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 6726-41. PMID 23595731 DOI: 10.1523/Jneurosci.4316-12.2013  0.223
2022 Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM, Baker WJ, Belov K, Blaxter ML, Marques Bonet T, Childers AK, Coddington JA, Crandall KA, Crawford AJ, Davey RP, ... ... Myers EW, et al. Standards recommendations for the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042802 DOI: 10.1073/pnas.2115639118  0.223
2015 Patel A, Lee HO, Jawerth L, Maharana S, Jahnel M, Hein MY, Stoynov S, Mahamid J, Saha S, Franzmann TM, Pozniakovski A, Poser I, Maghelli N, Royer LA, Weigert M, ... Myers EW, et al. A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation. Cell. 162: 1066-77. PMID 26317470 DOI: 10.1016/J.Cell.2015.07.047  0.218
2014 Merkel M, Sagner A, Gruber FS, Etournay R, Blasse C, Myers E, Eaton S, Jülicher F. The balance of prickle/spiny-legs isoforms controls the amount of coupling between core and fat PCP systems. Current Biology : Cb. 24: 2111-23. PMID 25201685 DOI: 10.1016/J.Cub.2014.08.005  0.215
2022 Doronina L, Hughes GM, Moreno-Santillan D, Lawless C, Lonergan T, Ryan L, Jebb D, Kirilenko BM, Korstian JM, Dávalos LM, Vernes SC, Myers EW, Teeling EC, Hiller M, Jermiin LS, et al. Contradictory Phylogenetic Signals in the Laurasiatheria Anomaly Zone. Genes. 13. PMID 35627151 DOI: 10.3390/genes13050766  0.215
2019 Vu HT, Mansour S, Kücken M, Blasse C, Basquin C, Azimzadeh J, Myers EW, Brusch L, Rink JC. Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks. Developmental Cell. 51: 526-542.e6. PMID 31743666 DOI: 10.1016/J.Devcel.2019.10.022  0.215
1983 Myers EW. An applicative random-access stack Information Processing Letters. 17: 241-248. DOI: 10.1016/0020-0190(83)90106-0  0.211
2003 Myers EW. Preface: Special RECOMB 2002 Issue Journal of Computational Biology. 10: 237. DOI: 10.1089/10665270360687995  0.203
2023 Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, ... ... Myers EW, et al. Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201076120. PMID 36749728 DOI: 10.1073/pnas.2201076120  0.202
2019 Subramanian K, Weigert M, Borsch O, Petzold H, Garcia-Ulloa A, Myers EW, Ader M, Solovei I, Kreysing M. Author response: Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice Elife. DOI: 10.7554/Elife.49542.Sa2  0.195
1998 Sagot MF, Myers EW. Identifying satellites in nucleic acid sequences Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 234-242.  0.186
2009 Long F, Peng H, Liu X, Kim SK, Myers E. A 3D digital atlas of C. elegans and its application to single-cell analyses Nature Methods. 6: 667-672. PMID 19684595 DOI: 10.1038/Nmeth.1366  0.178
2023 Shatilovich A, Gade VR, Pippel M, Hoffmeyer TT, Tchesunov AV, Stevens L, Winkler S, Hughes GM, Traikov S, Hiller M, Rivkina E, Schiffer PH, Myers EW, Kurzchalia TV. A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva. Plos Genetics. 19: e1010798. PMID 37498820 DOI: 10.1371/journal.pgen.1010798  0.173
1996 Kannan SK, Myers EW. An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score Siam Journal On Computing. 25: 648-662. DOI: 10.1137/S0097539794262677  0.169
2010 Xie J, Zhao T, Lee T, Myers E, Peng H. Automatic neuron tracing in volumetric microscopy images with anisotropic path searching. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 13: 472-9. PMID 20879349 DOI: 10.1007/978-3-642-15745-5_58  0.166
2007 Long F, Peng H, Myers E. Automatic segmentation of nuclei in 3D microscopy images of celegans 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 536-539. DOI: 10.1109/ISBI.2007.356907  0.143
2021 Wang Y, Eddison M, Fleishman G, Weigert M, Xu S, Wang T, Rokicki K, Goina C, Henry FE, Lemire AL, Schmidt U, Yang H, Svoboda K, Myers EW, Saalfeld S, et al. EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization. Cell. PMID 34875226 DOI: 10.1016/j.cell.2021.11.024  0.137
2021 Moreno Santillán DD, Lama TM, Gutierrez Guerrero YT, Brown AM, Donat P, Zhao H, Rossiter SJ, Yohe LR, Potter JH, Teeling EC, Vernes SC, Davies KTJ, Myers E, Hughes GM, Huang Z, et al. Large-scale Genome sampling reveals unique immunity and metabolic adaptations in Bats. Molecular Ecology. PMID 34146369 DOI: 10.1111/mec.16027  0.128
2011 Liu M, Peng H, Roy-Chowdhury AK, Myers E. 3D neuron tip detection in volumetric microscopy images Proceedings - 2011 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2011. 366-371. DOI: 10.1109/BIBM.2011.126  0.123
2023 Burguera D, Dionigi F, Kverková K, Winkler S, Brown T, Pippel M, Zhang Y, Shafer M, Nichols ALA, Myers E, Němec P, Musilova Z. Expanded olfactory system in ray-finned fishes capable of terrestrial exploration. Bmc Biology. 21: 163. PMID 37525196 DOI: 10.1186/s12915-023-01661-8  0.121
2023 Rocha-Martins M, Nerli E, Kretzschmar J, Weigert M, Icha J, Myers EW, Norden C. Neuronal migration prevents spatial competition in retinal morphogenesis. Nature. 620: 615-624. PMID 37558872 DOI: 10.1038/s41586-023-06392-y  0.119
2007 Peng H, Long F, Myers EW. Straightening worm images 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 292-295. DOI: 10.1109/ISBI.2007.356846  0.117
2023 Paulat NS, Storer JM, Moreno-Santillán DD, Osmanski AB, Sullivan KAM, Grimshaw JR, Korstian J, Halsey M, Garcia CJ, Crookshanks C, Roberts J, Smit AFA, Hubley R, Rosen J, Teeling EC, ... ... Myers E, et al. Chiropterans are a hotspot for horizontal transfer of DNA transposons in Mammalia. Molecular Biology and Evolution. PMID 37071810 DOI: 10.1093/molbev/msad092  0.089
2000 Myers EW, Ohlbaum ED. Discrediting the truthful witness: Demonstrating the reality of adversary advocacy Fordham Law Review. 69: 1055-1073.  0.062
2009 Power ML, Myers EW. Digestion in the common marmoset (Callithrix jacchus), a gummivore-frugivore. American Journal of Primatology. 71: 957-63. PMID 19725117 DOI: 10.1002/ajp.20737  0.061
1998 Myers EW, Oliva P, Guimares K. Reporting exact and approximate regular expression matches Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1448: 91-103.  0.059
2006 Peng H, Long F, Eisen MB, Myers EW. Clustering gene expression patterns of fly embryos 2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 2006: 1144-1147.  0.05
2002 Pfützer R, Myers E, Applebaum-Shapiro S, Finch R, Ellis I, Neoptolemos J, Kant JA, Whitcomb DC. Novel cationic trypsinogen (PRSS1) N29T and R122C mutations cause autosomal dominant hereditary pancreatitis Gut. 50: 271-272. PMID 11788572 DOI: 10.1136/GUT.50.2.271  0.046
2008 Argiris A, Karamouzis MV, Johnson JT, Heron DE, Myers E, Eibling D, Cano E, Urba S, Gluckman J, Grandis JR, Wang Y, Agarwala SS. Long-term results of a phase III randomized trial of postoperative radiotherapy with or without carboplatin in patients with high-risk head and neck cancer. The Laryngoscope. 118: 444-9. PMID 18091334 DOI: 10.1097/Mlg.0B013E31815B48F4  0.044
2004 Peng H, Myers EW. Comparing In situ mRNA Expression Patterns of Drosophila Embryos Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 157-166.  0.04
2005 Rasmussen KR, Stoye J, Myers EW. Efficient q-gram filters for finding all ε-matches over a given length Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500: 189-203.  0.038
2010 Grénman R, Chevalier D, Gregoire V, Myers E, Rogers S. Treatment of head and neck cancer in the elderly: European Consensus (panel 6) at the EUFOS Congress in Vienna 2007. European Archives of Oto-Rhino-Laryngology : Official Journal of the European Federation of Oto-Rhino-Laryngological Societies (Eufos) : Affiliated With the German Society For Oto-Rhino-Laryngology - Head and Neck Surgery. 267: 1619-21. PMID 20454970 DOI: 10.1007/s00405-010-1263-6  0.031
1999 Myers EW. Examining independence and loyalty Temple Law Review. 72: 857-868.  0.026
2003 Milne H, Ionescu D, Barnes L, Myers E, Hunt J. Pathology quiz case 2. Lymphoepithelial carcinoma (LEC) with a focal conventional squamous cell carcinoma (SCC) component. Archives of Otolaryngology--Head & Neck Surgery. 129: 370, 372. PMID 12622555  0.024
2007 Agarwala SS, Cano E, Heron DE, Johnson J, Myers E, Sandulache V, Bahri S, Ferris R, Wang Y, Argiris A. Long-term outcomes with concurrent carboplatin, paclitaxel and radiation therapy for locally advanced, inoperable head and neck cancer. Annals of Oncology : Official Journal of the European Society For Medical Oncology / Esmo. 18: 1224-9. PMID 17675395 DOI: 10.1093/annonc/mdm088  0.021
1995 Myers EW. Guest Editor's foreword Algorithmica. 13: 1-6. DOI: 10.1007/BF01188579  0.016
1997 Myers EW. Teaching Good and Teaching Well: Integrating Values with Theory and Practice Journal of Legal Education. 47: 401-423.  0.011
2014 Helman SN, Badhey A, Kadakia S, Myers E. Revisiting Crouzon syndrome: reviewing the background and management of a multifaceted disease. Oral and Maxillofacial Surgery. 18: 373-9. PMID 25245177 DOI: 10.1007/s10006-014-0467-0  0.01
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