Tanja Kortemme - Publications

University of California, San Francisco, San Francisco, CA 

84 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Loshbaugh AL, Kortemme T. Comparison of Rosetta flexible-backbone computational protein design methods on binding interactions. Proteins. PMID 31344278 DOI: 10.1002/prot.25790  0.64
2019 Kundert K, Lucas JE, Watters KE, Fellmann C, Ng AH, Heineike BM, Fitzsimmons CM, Oakes BL, Qu J, Prasad N, Rosenberg OS, Savage DF, El-Samad H, Doudna JA, Kortemme T. Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs. Nature Communications. 10: 2127. PMID 31073154 DOI: 10.1038/s41467-019-09985-2  0.4
2019 Kundert K, Kortemme T. Computational design of structured loops for new protein functions. Biological Chemistry. 400: 275-288. PMID 30676995 DOI: 10.1515/hsz-2018-0348  0.4
2018 Barlow KA, Ó Conchúir S, Thompson S, Suresh P, Lucas J, Heinonen M, Kortemme T. Flex ddG: Rosetta Ensemble-Based Estimation of Changes in Protein-Protein Binding Affinity Upon Mutation. The Journal of Physical Chemistry. B. PMID 29401388 DOI: 10.1021/acs.jpcb.7b11367  0.4
2017 Smart AD, Pache RA, Thomsen ND, Kortemme T, Davis GW, Wells JA. Engineering a light-activated caspase-3 for precise ablation of neurons in vivo. Proceedings of the National Academy of Sciences of the United States of America. PMID 28893998 DOI: 10.1073/pnas.1705064114  0.4
2017 Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL, ... ... Kortemme T, et al. The Rosetta all-atom energy function for macromolecular modeling and design. Journal of Chemical Theory and Computation. PMID 28430426 DOI: 10.1021/acs.jctc.7b00125  1
2016 Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate R, Green EM, ... ... Kortemme T, et al. Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. Elife. 5. PMID 27111525 DOI: 10.7554/eLife.15802  1
2016 Ritterson RS, Hoersch D, Barlow KA, Kortemme T. Design of Light-Controlled Protein Conformations and Functions. Methods in Molecular Biology (Clifton, N.J.). 1414: 197-211. PMID 27094293 DOI: 10.1007/978-1-4939-3569-7_12  0.4
2015 Ollikainen N, de Jong RM, Kortemme T. Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity. Plos Computational Biology. 11: e1004335. PMID 26397464 DOI: 10.1371/journal.pcbi.1004335  1
2015 Ó Conchúir S, Barlow KA, Pache RA, Ollikainen N, Kundert K, O'Meara MJ, Smith CA, Kortemme T. A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design. Plos One. 10: e0130433. PMID 26335248 DOI: 10.1371/journal.pone.0130433  1
2015 O'Meara MJ, Leaver-Fay A, Tyka M, Stein A, Houlihan K, DiMaio F, Bradley P, Kortemme T, Baker D, Snoeyink J, Kuhlman B. A Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta. Journal of Chemical Theory and Computation. 11: 609-622. PMID 25866491 DOI: 10.1021/ct500864r  1
2014 Melero C, Ollikainen N, Harwood I, Karpiak J, Kortemme T. Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition. Proceedings of the National Academy of Sciences of the United States of America. 111: 15426-31. PMID 25313039 DOI: 10.1073/pnas.1410624111  1
2014 Koide S, Kortemme T. Editorial overview: Engineering and design: raising the bar through innovation and integration. Current Opinion in Structural Biology. 27: vi-viii. PMID 25175941 DOI: 10.1016/j.sbi.2014.08.004  1
2013 Hoersch D, Roh SH, Chiu W, Kortemme T. Reprogramming an ATP-driven protein machine into a light-gated nanocage. Nature Nanotechnology. 8: 928-32. PMID 24270642 DOI: 10.1038/nnano.2013.242  1
2013 Jackson EL, Ollikainen N, Covert AW, Kortemme T, Wilke CO. Amino-acid site variability among natural and designed proteins. Peerj. 1: e211. PMID 24255821 DOI: 10.7717/peerj.211  1
2013 Ollikainen N, Kortemme T. Computational protein design quantifies structural constraints on amino acid covariation. Plos Computational Biology. 9: e1003313. PMID 24244128 DOI: 10.1371/journal.pcbi.1003313  1
2013 Ritterson RS, Kuchenbecker KM, Michalik M, Kortemme T. Design of a photoswitchable cadherin. Journal of the American Chemical Society. 135: 12516-9. PMID 23923816 DOI: 10.1021/ja404992r  1
2013 Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, et al. Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE). Plos One. 8: e63906. PMID 23717507 DOI: 10.1371/journal.pone.0063906  1
2013 Stein A, Kortemme T. Improvements to robotics-inspired conformational sampling in rosetta. Plos One. 8: e63090. PMID 23704889 DOI: 10.1371/journal.pone.0063090  1
2013 Leaver-Fay A, O'Meara MJ, Tyka M, Jacak R, Song Y, Kellogg EH, Thompson J, Davis IW, Pache RA, Lyskov S, Gray JJ, Kortemme T, Richardson JS, Havranek JJ, Snoeyink J, et al. Scientific benchmarks for guiding macromolecular energy function improvement. Methods in Enzymology. 523: 109-43. PMID 23422428 DOI: 10.1016/B978-0-12-394292-0.00006-0  1
2013 Ollikainen N, Smith CA, Fraser JS, Kortemme T. Flexible backbone sampling methods to model and design protein alternative conformations. Methods in Enzymology. 523: 61-85. PMID 23422426 DOI: 10.1016/B978-0-12-394292-0.00004-7  1
2013 Smith CA, Shi CA, Chroust MK, Bliska TE, Kelly MJ, Jacobson MP, Kortemme T. Design of a phosphorylatable PDZ domain with peptide-specific affinity changes. Structure (London, England : 1993). 21: 54-64. PMID 23159126 DOI: 10.1016/j.str.2012.10.007  1
2012 Markley JL, Akutsu H, Asakura T, Baldus M, Boelens R, Bonvin A, Kaptein R, Bax A, Bezsonova I, Gryk MR, Hoch JC, Korzhnev DM, Maciejewski MW, Case D, Chazin WJ, ... ... Kortemme T, et al. In support of the BMRB. Nature Structural & Molecular Biology. 19: 854-60. PMID 22955930 DOI: 10.1038/nsmb.2371  0.44
2012 Humphris-Narayanan E, Akiva E, Varela R, Ó Conchúir S, Kortemme T. Prediction of mutational tolerance in HIV-1 protease and reverse transcriptase using flexible backbone protein design. Plos Computational Biology. 8: e1002639. PMID 22927804 DOI: 10.1371/journal.pcbi.1002639  1
2012 Eames M, Kortemme T. Cost-benefit tradeoffs in engineered lac operons. Science (New York, N.Y.). 336: 911-5. PMID 22605776 DOI: 10.1126/science.1219083  1
2012 Kapp GT, Liu S, Stein A, Wong DT, Reményi A, Yeh BJ, Fraser JS, Taunton J, Lim WA, Kortemme T. Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair. Proceedings of the National Academy of Sciences of the United States of America. 109: 5277-82. PMID 22403064 DOI: 10.1073/pnas.1114487109  1
2012 Jäger S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, Shales M, Mercenne G, Pache L, Li K, Hernandez H, Jang GM, Roth SL, Akiva E, Marlett J, ... ... Kortemme T, et al. Global landscape of HIV-human protein complexes. Nature. 481: 365-70. PMID 22190034 DOI: 10.1038/nature10719  1
2011 Chao LH, Stratton MM, Lee IH, Rosenberg OS, Levitz J, Mandell DJ, Kortemme T, Groves JT, Schulman H, Kuriyan J. A mechanism for tunable autoinhibition in the structure of a human Ca2+/calmodulin- dependent kinase II holoenzyme. Cell. 146: 732-45. PMID 21884935 DOI: 10.1016/j.cell.2011.07.038  1
2011 Smith CA, Kortemme T. Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design. Plos One. 6: e20451. PMID 21789164 DOI: 10.1371/journal.pone.0020451  1
2011 Babor M, Mandell DJ, Kortemme T. Assessment of flexible backbone protein design methods for sequence library prediction in the therapeutic antibody Herceptin-HER2 interface. Protein Science : a Publication of the Protein Society. 20: 1082-9. PMID 21465611 DOI: 10.1002/pro.632  1
2011 Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, ... ... Kortemme T, et al. ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. Methods in Enzymology. 487: 545-74. PMID 21187238 DOI: 10.1016/B978-0-12-381270-4.00019-6  1
2011 Moon TS, Clarke EJ, Groban ES, Tamsir A, Clark RM, Eames M, Kortemme T, Voigt CA. Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli. Journal of Molecular Biology. 406: 215-27. PMID 21185306 DOI: 10.1016/j.jmb.2010.12.019  1
2010 Lauffer BE, Melero C, Temkin P, Lei C, Hong W, Kortemme T, von Zastrow M. SNX27 mediates PDZ-directed sorting from endosomes to the plasma membrane. The Journal of Cell Biology. 190: 565-74. PMID 20733053 DOI: 10.1083/jcb.201004060  1
2010 Smith CA, Kortemme T. Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains. Journal of Molecular Biology. 402: 460-74. PMID 20654621 DOI: 10.1016/j.jmb.2010.07.032  1
2010 Lauck F, Smith CA, Friedland GF, Humphris EL, Kortemme T. RosettaBackrub--a web server for flexible backbone protein structure modeling and design. Nucleic Acids Research. 38: W569-75. PMID 20462859 DOI: 10.1093/nar/gkq369  1
2010 Friedland GD, Kortemme T. Designing ensembles in conformational and sequence space to characterize and engineer proteins. Current Opinion in Structural Biology. 20: 377-84. PMID 20303740 DOI: 10.1016/j.sbi.2010.02.004  1
2009 Mandell DJ, Kortemme T. Computer-aided design of functional protein interactions. Nature Chemical Biology. 5: 797-807. PMID 19841629 DOI: 10.1038/nchembio.251  1
2009 Mandell DJ, Kortemme T. Backbone flexibility in computational protein design. Current Opinion in Biotechnology. 20: 420-8. PMID 19709874 DOI: 10.1016/j.copbio.2009.07.006  1
2009 Mandell DJ, Coutsias EA, Kortemme T. Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling. Nature Methods. 6: 551-2. PMID 19644455 DOI: 10.1038/nmeth0809-551  1
2009 Friedland GD, Lakomek NA, Griesinger C, Meiler J, Kortemme T. A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family. Plos Computational Biology. 5: e1000393. PMID 19478996 DOI: 10.1371/journal.pcbi.1000393  1
2009 Oberdorf R, Kortemme T. Complex topology rather than complex membership is a determinant of protein dosage sensitivity. Molecular Systems Biology. 5: 253. PMID 19293832 DOI: 10.1038/msb.2009.9  1
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, ... ... Kortemme T, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/j.str.2008.12.014  1
2009 Babor M, Kortemme T. Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility. Proteins. 75: 846-58. PMID 19194863 DOI: 10.1002/prot.22293  1
2009 Freedman TS, Sondermann H, Kuchment O, Friedland GD, Kortemme T, Kuriyan J. Differences in flexibility underlie functional differences in the Ras activators son of sevenless and Ras guanine nucleotide releasing factor 1. Structure (London, England : 1993). 17: 41-53. PMID 19141281 DOI: 10.1016/j.str.2008.11.004  1
2009 Lauffer BE, Chen S, Melero C, Kortemme T, von Zastrow M, Vargas GA. Engineered protein connectivity to actin mimics PDZ-dependent recycling of G protein-coupled receptors but not its regulation by Hrs. The Journal of Biological Chemistry. 284: 2448-58. PMID 19001361 DOI: 10.1074/jbc.M806370200  1
2009 Ollikainen N, Sentovich E, Coelho C, Kuehlmann A, Kortemme T. SAT-based protein design Ieee/Acm International Conference On Computer-Aided Design, Digest of Technical Papers, Iccad. 128-135.  1
2008 Humphris EL, Kortemme T. Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design. Structure (London, England : 1993). 16: 1777-88. PMID 19081054 DOI: 10.1016/j.str.2008.09.012  1
2008 Friedland GD, Linares AJ, Smith CA, Kortemme T. A simple model of backbone flexibility improves modeling of side-chain conformational variability. Journal of Molecular Biology. 380: 757-74. PMID 18547586 DOI: 10.1016/j.jmb.2008.05.006  1
2008 Smith CA, Kortemme T. Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction. Journal of Molecular Biology. 380: 742-56. PMID 18547585 DOI: 10.1016/j.jmb.2008.05.023  1
2008 McBeth C, Seamons A, Pizarro JC, Fleishman SJ, Baker D, Kortemme T, Goverman JM, Strong RK. A new twist in TCR diversity revealed by a forbidden alphabeta TCR. Journal of Molecular Biology. 375: 1306-19. PMID 18155234 DOI: 10.1016/j.jmb.2007.11.020  1
2007 Eames M, Kortemme T. Structural mapping of protein interactions reveals differences in evolutionary pressures correlated to mRNA level and protein abundance. Structure (London, England : 1993). 15: 1442-51. PMID 17997970 DOI: 10.1016/j.str.2007.09.010  1
2007 Humphris EL, Kortemme T. Design of multi-specificity in protein interfaces. Plos Computational Biology. 3: e164. PMID 17722975 DOI: 10.1371/journal.pcbi.0030164  1
2007 Lengyel CS, Willis LJ, Mann P, Baker D, Kortemme T, Strong RK, McFarland BJ. Mutations designed to destabilize the receptor-bound conformation increase MICA-NKG2D association rate and affinity. The Journal of Biological Chemistry. 282: 30658-66. PMID 17690100 DOI: 10.1074/jbc.M704513200  1
2006 Freedman TS, Sondermann H, Friedland GD, Kortemme T, Bar-Sagi D, Marqusee S, Kuriyan J. A Ras-induced conformational switch in the Ras activator Son of sevenless. Proceedings of the National Academy of Sciences of the United States of America. 103: 16692-7. PMID 17075039 DOI: 10.1073/pnas.0608127103  1
2006 Wang SX, Pandey KC, Somoza JR, Sijwali PS, Kortemme T, Brinen LS, Fletterick RJ, Rosenthal PJ, McKerrow JH. Structural basis for unique mechanisms of folding and hemoglobin binding by a malarial protease. Proceedings of the National Academy of Sciences of the United States of America. 103: 11503-8. PMID 16864794 DOI: 10.1073/pnas.0600489103  1
2006 Joachimiak LA, Kortemme T, Stoddard BL, Baker D. Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. Journal of Molecular Biology. 361: 195-208. PMID 16831445 DOI: 10.1016/j.jmb.2006.05.022  1
2006 Palmer AE, Giacomello M, Kortemme T, Hires SA, Lev-Ram V, Baker D, Tsien RY. Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs. Chemistry & Biology. 13: 521-30. PMID 16720273 DOI: 10.1016/j.chembiol.2006.03.007  1
2006 Song G, Lazar GA, Kortemme T, Shimaoka M, Desjarlais JR, Baker D, Springer TA. Rational design of intercellular adhesion molecule-1 (ICAM-1) variants for antagonizing integrin lymphocyte function-associated antigen-1-dependent adhesion. The Journal of Biological Chemistry. 281: 5042-9. PMID 16354667 DOI: 10.1074/jbc.M510454200  1
2005 Morozov AV, Kortemme T. Potential functions for hydrogen bonds in protein structure prediction and design. Advances in Protein Chemistry. 72: 1-38. PMID 16581371 DOI: 10.1016/S0065-3233(05)72001-5  1
2005 Jiang L, Kuhlman B, Kortemme T, Baker D. A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces. Proteins. 58: 893-904. PMID 15651050 DOI: 10.1002/prot.20347  1
2004 Chen Y, Kortemme T, Robertson T, Baker D, Varani G. A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys. Nucleic Acids Research. 32: 5147-62. PMID 15459285 DOI: 10.1093/nar/gkh785  1
2004 Morozov AV, Kortemme T, Tsemekhman K, Baker D. Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations. Proceedings of the National Academy of Sciences of the United States of America. 101: 6946-51. PMID 15118103 DOI: 10.1073/pnas.0307578101  1
2004 Kortemme T, Baker D. Computational design of protein-protein interactions. Current Opinion in Chemical Biology. 8: 91-7. PMID 15036162 DOI: 10.1016/j.cbpa.2003.12.008  1
2004 Kortemme T, Joachimiak LA, Bullock AN, Schuler AD, Stoddard BL, Baker D. Computational redesign of protein-protein interaction specificity. Nature Structural & Molecular Biology. 11: 371-9. PMID 15034550 DOI: 10.1038/nsmb749  1
2004 Svensson HG, Wedemeyer WJ, Ekstrom JL, Callender DR, Kortemme T, Kim DE, Sjöbring U, Baker D. Contributions of amino acid side chains to the kinetics and thermodynamics of the bivalent binding of protein L to Ig kappa light chain. Biochemistry. 43: 2445-57. PMID 14992582 DOI: 10.1021/bi034873s  1
2004 Kortemme T, Kim DE, Baker D. Computational alanine scanning of protein-protein interfaces. Science's Stke : Signal Transduction Knowledge Environment. 2004: pl2. PMID 14872095 DOI: 10.1126/stke.2192004pl2  1
2003 Boulanger MJ, Bankovich AJ, Kortemme T, Baker D, Garcia KC. Convergent mechanisms for recognition of divergent cytokines by the shared signaling receptor gp130. Molecular Cell. 12: 577-89. PMID 14527405 DOI: 10.1016/S1097-2765(03)00365-4  1
2003 Gray JJ, Moughon SE, Kortemme T, Schueler-Furman O, Misura KM, Morozov AV, Baker D. Protein-protein docking predictions for the CAPRI experiment. Proteins. 52: 118-22. PMID 12784377 DOI: 10.1002/prot.10384  1
2003 McFarland BJ, Kortemme T, Yu SF, Baker D, Strong RK. Symmetry recognizing asymmetry: analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands. Structure (London, England : 1993). 11: 411-22. PMID 12679019 DOI: 10.1016/S0969-2126(03)00047-9  1
2003 Kortemme T, Morozov AV, Baker D. An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. Journal of Molecular Biology. 326: 1239-59. PMID 12589766 DOI: 10.1016/S0022-2836(03)00021-4  1
2003 Morozov AV, Kortemme T, Baker D. Evaluation of models of electrostatic interactions in proteins Journal of Physical Chemistry B. 107: 2075-2090. DOI: 10.1021/jp0267555  1
2002 Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL. Design, activity, and structure of a highly specific artificial endonuclease. Molecular Cell. 10: 895-905. PMID 12419232 DOI: 10.1016/S1097-2765(02)00690-1  1
2002 Kortemme T, Baker D. A simple physical model for binding energy hot spots in protein-protein complexes. Proceedings of the National Academy of Sciences of the United States of America. 99: 14116-21. PMID 12381794 DOI: 10.1073/pnas.202485799  1
2002 Alm E, Morozov AV, Kortemme T, Baker D. Simple physical models connect theory and experiment in protein folding kinetics. Journal of Molecular Biology. 322: 463-76. PMID 12217703 DOI: 10.1016/S0022-2836(02)00706-4  1
2000 Kortemme T, Kelly MJ, Kay LE, Forman-Kay J, Serrano L. Similarities between the spectrin SH3 domain denatured state and its folding transition state. Journal of Molecular Biology. 297: 1217-29. PMID 10764585 DOI: 10.1006/jmbi.2000.3618  1
1999 Lacroix E, Kortemme T, Lopez de la Paz M, Serrano L. The design of linear peptides that fold as monomeric beta-sheet structures. Current Opinion in Structural Biology. 9: 487-93. PMID 10449370 DOI: 10.1016/S0959-440X(99)80069-4  1
1999 Ramírez-Alvarado M, Kortemme T, Blanco FJ, Serrano L. Beta-hairpin and beta-sheet formation in designed linear peptides. Bioorganic & Medicinal Chemistry. 7: 93-103. PMID 10199660 DOI: 10.1016/S0968-0896(98)00215-6  1
1998 Kortemme T, Ramírez-Alvarado M, Serrano L. Design of a 20-amino acid, three-stranded beta-sheet protein. Science (New York, N.Y.). 281: 253-6. PMID 9657719 DOI: 10.1126/science.281.5374.253  1
1998 Bulaj G, Kortemme T, Goldenberg DP. Ionization-reactivity relationships for cysteine thiols in polypeptides. Biochemistry. 37: 8965-72. PMID 9636038 DOI: 10.1021/bi973101r  1
1996 Kortemme T, Darby NJ, Creighton TE. Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein disulfide isomerase. Biochemistry. 35: 14503-11. PMID 8931546 DOI: 10.1021/bi9617724  1
1996 Kortemme T, Hollecker M, Kemmink J, Creighton TE. Comparison of the (30-51, 14-38) two-disulphide folding intermediates of the homologous proteins dendrotoxin K and bovine pancreatic trypsin inhibitor by two-dimensional 1H nuclear magnetic resonance. Journal of Molecular Biology. 257: 188-98. PMID 8632454 DOI: 10.1006/jmbi.1996.0155  1
1995 Kortemme T, Creighton TE. Ionisation of cysteine residues at the termini of model alpha-helical peptides. Relevance to unusual thiol pKa values in proteins of the thioredoxin family. Journal of Molecular Biology. 253: 799-812. PMID 7473753 DOI: 10.1006/jmbi.1995.0592  1
1994 Chakrabartty A, Kortemme T, Baldwin RL. Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions. Protein Science : a Publication of the Protein Society. 3: 843-52. PMID 8061613 DOI: 10.1002/pro.5560030514  1
1993 Chakrabartty A, Kortemme T, Padmanabhan S, Baldwin RL. Aromatic side-chain contribution to far-ultraviolet circular dichroism of helical peptides and its effect on measurement of helix propensities. Biochemistry. 32: 5560-5. PMID 8504077  1
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