Ora Schueler-Furman - Publications


65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ben-Menachem R, Wang K, Marcu O, Yu Z, Lim TK, Lin Q, Schueler-Furman O, Pines O. Yeast aconitase mitochondrial import is modulated by interactions of its C and N terminal domains and Ssa1/2 (Hsp70). Scientific Reports. 8: 5903. PMID 29651044 DOI: 10.1038/s41598-018-24068-w  0.44
2016 Marcu O, Dodson EJ, Alam N, Sperber M, Kozakov D, Lensink MF, Schueler-Furman O. FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility. Proteins. PMID 28002624 DOI: 10.1002/prot.25230  0.44
2016 Levin L, Srour S, Gartner J, Kapitansky O, Qutob N, Dror S, Golan T, Dayan R, Brener R, Ziv T, Khaled M, Schueler-Furman O, Samuels Y, Levy C. Parkin Somatic Mutations Link Melanoma and Parkinson's Disease. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 27297116 DOI: 10.1016/j.jgg.2016.05.005  1
2016 Sedan Y, Marcu O, Lyskov S, Schueler-Furman O. Peptiderive server: derive peptide inhibitors from protein-protein interactions. Nucleic Acids Research. PMID 27141963 DOI: 10.1093/nar/gkw385  0.44
2016 Alam N, Zimmerman L, Wolfson NA, Joseph CG, Fierke CA, Schueler-Furman O. Structure-Based Identification of HDAC8 Non-histone Substrates. Structure (London, England : 1993). 24: 458-68. PMID 26933971 DOI: 10.1016/j.str.2016.02.002  1
2016 Kumar S, Kolodkin-Gal I, Vesper O, Alam N, Schueler-Furman O, Moll I, Engelberg-Kulka H. Escherichia coli Quorum-Sensing EDF, A Peptide Generated by Novel Multiple Distinct Mechanisms and Regulated by trans-Translation. Mbio. 7. PMID 26814184 DOI: 10.1128/mBio.02034-15  1
2015 Abu-Remaileh M, Dodson EJ, Schueler-Furman O, Aqeilan RI. Pleiotropic Functions of Tumor Suppressor WWOX in Normal and Cancer Cells. The Journal of Biological Chemistry. PMID 26499798 DOI: 10.1074/jbc.R115.676346  1
2015 Lossos A, Elazar N, Lerer I, Schueler-Furman O, Fellig Y, Glick B, Zimmerman BE, Azulay H, Dotan S, Goldberg S, Gomori JM, Ponger P, Newman JP, Marreed H, Steck AJ, et al. Myelin-associated glycoprotein gene mutation causes Pelizaeus-Merzbacher disease-like disorder. Brain : a Journal of Neurology. PMID 26179919 DOI: 10.1093/brain/awv204  1
2015 Alam N, Lavi A, London N, Raveh B, Kozakov D, Schueler-Furman O. 180 Towards the high-resolution, ab initio modeling of peptide-mediated interactions. Journal of Biomolecular Structure & Dynamics. 33: 117-8. PMID 26103390 DOI: 10.1080/07391102.2015.1032817  0.32
2015 Slutzki M, Reshef D, Barak Y, Haimovitz R, Rotem-Bamberger S, Lamed R, Bayer EA, Schueler-Furman O. Crucial roles of single residues in binding affinity, specificity, and promiscuity in the cellulosomal cohesin-dockerin interface. The Journal of Biological Chemistry. 290: 13654-66. PMID 25833947 DOI: 10.1074/jbc.M115.651208  1
2015 Dodson EJ, Fishbain-Yoskovitz V, Rotem-Bamberger S, Schueler-Furman O. Versatile communication strategies among tandem WW domain repeats. Experimental Biology and Medicine (Maywood, N.J.). 240: 351-60. PMID 25710931 DOI: 10.1177/1535370214566558  1
2015 Abdulhag UN, Soiferman D, Schueler-Furman O, Miller C, Shaag A, Elpeleg O, Edvardson S, Saada A. Mitochondrial complex IV deficiency, caused by mutated COX6B1, is associated with encephalomyopathy, hydrocephalus and cardiomyopathy. European Journal of Human Genetics : Ejhg. 23: 159-64. PMID 24781756 DOI: 10.1038/ejhg.2014.85  1
2014 Gao M, London N, Cheng K, Tamura R, Jin J, Schueler-Furman O, Yin H. Rationally Designed Macrocyclic Peptides as Synergistic Agonists of LPS-Induced Inflammatory Response. Tetrahedron. 70: 7664-7668. PMID 25400297 DOI: 10.1016/j.tet.2014.07.026  1
2014 Kozakov D, Li K, Hall DR, Beglov D, Zheng J, Vakili P, Schueler-Furman O, Paschalidis ICh, Clore GM, Vajda S. Encounter complexes and dimensionality reduction in protein-protein association. Elife. 3: e01370. PMID 24714491 DOI: 10.7554/eLife.01370  1
2013 London N, Raveh B, Schueler-Furman O. Druggable protein-protein interactions--from hot spots to hot segments. Current Opinion in Chemical Biology. 17: 952-9. PMID 24183815 DOI: 10.1016/j.cbpa.2013.10.011  1
2013 London N, Raveh B, Schueler-Furman O. Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how. Current Opinion in Structural Biology. 23: 894-902. PMID 24138780 DOI: 10.1016/j.sbi.2013.07.006  1
2013 Kilambi KP, Pacella MS, Xu J, Labonte JW, Porter JR, Muthu P, Drew K, Kuroda D, Schueler-Furman O, Bonneau R, Gray JJ. Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27. Proteins. 81: 2201-9. PMID 24123494 DOI: 10.1002/prot.24425  1
2013 Lavi A, Ngan CH, Movshovitz-Attias D, Bohnuud T, Yueh C, Beglov D, Schueler-Furman O, Kozakov D. Detection of peptide-binding sites on protein surfaces: the first step toward the modeling and targeting of peptide-mediated interactions. Proteins. 81: 2096-105. PMID 24123488 DOI: 10.1002/prot.24422  1
2013 Chan AL, Grossman T, Zuckerman V, Campigli Di Giammartino D, Moshel O, Scheffner M, Monahan B, Pilling P, Jiang YH, Haupt S, Schueler-Furman O, Haupt Y. c-Abl phosphorylates E6AP and regulates its E3 ubiquitin ligase activity. Biochemistry. 52: 3119-29. PMID 23581475 DOI: 10.1021/bi301710c  1
2013 Burak E, Yogev O, Sheffer S, Schueler-Furman O, Pines O. Evolving dual targeting of a prokaryotic protein in yeast. Molecular Biology and Evolution. 30: 1563-73. PMID 23462316 DOI: 10.1093/molbev/mst039  1
2012 Slutzki M, Barak Y, Reshef D, Schueler-Furman O, Lamed R, Bayer EA. Indirect ELISA-based approach for comparative measurement of high-affinity cohesin-dockerin interactions. Journal of Molecular Recognition : Jmr. 25: 616-22. PMID 23108621 DOI: 10.1002/jmr.2178  1
2012 Brenke R, Hall DR, Chuang GY, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. Application of asymmetric statistical potentials to antibody-protein docking. Bioinformatics (Oxford, England). 28: 2608-14. PMID 23053206 DOI: 10.1093/bioinformatics/bts493  1
2012 Wexselblatt E, Oppenheimer-Shaanan Y, Kaspy I, London N, Schueler-Furman O, Yavin E, Glaser G, Katzhendler J, Ben-Yehuda S. Relacin, a novel antibacterial agent targeting the Stringent Response. Plos Pathogens. 8: e1002925. PMID 23028324 DOI: 10.1371/journal.ppat.1002925  1
2012 London N, Gullá S, Keating AE, Schueler-Furman O. In silico and in vitro elucidation of BH3 binding specificity toward Bcl-2. Biochemistry. 51: 5841-50. PMID 22702834 DOI: 10.1021/bi3003567  1
2012 Slutzki M, Barak Y, Reshef D, Schueler-Furman O, Lamed R, Bayer EA. Measurements of relative binding of cohesin and dockerin mutants using an advanced ELISA technique for high-affinity interactions. Methods in Enzymology. 510: 417-28. PMID 22608739 DOI: 10.1016/B978-0-12-415931-0.00022-7  1
2012 London N, Raveh B, Schueler-Furman O. Modeling peptide-protein interactions. Methods in Molecular Biology (Clifton, N.J.). 857: 375-98. PMID 22323231 DOI: 10.1007/978-1-61779-588-6_17  1
2011 Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, ... ... Schueler-Furman O, et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of Molecular Biology. 414: 289-302. PMID 22001016 DOI: 10.1016/j.jmb.2011.09.031  1
2011 London N, Lamphear CL, Hougland JL, Fierke CA, Schueler-Furman O. Identification of a novel class of farnesylation targets by structure-based modeling of binding specificity. Plos Computational Biology. 7: e1002170. PMID 21998565 DOI: 10.1371/journal.pcbi.1002170  1
2011 Al-Quadan T, Price CT, London N, Schueler-Furman O, AbuKwaik Y. Anchoring of bacterial effectors to host membranes through host-mediated lipidation by prenylation: a common paradigm. Trends in Microbiology. 19: 573-9. PMID 21983544 DOI: 10.1016/j.tim.2011.08.003  1
2011 London N, Raveh B, Cohen E, Fathi G, Schueler-Furman O. Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions. Nucleic Acids Research. 39: W249-53. PMID 21622962 DOI: 10.1093/nar/gkr431  1
2011 Raveh B, London N, Zimmerman L, Schueler-Furman O. Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors. Plos One. 6: e18934. PMID 21572516 DOI: 10.1371/journal.pone.0018934  1
2011 Belitsky M, Avshalom H, Erental A, Yelin I, Kumar S, London N, Sperber M, Schueler-Furman O, Engelberg-Kulka H. The Escherichia coli extracellular death factor EDF induces the endoribonucleolytic activities of the toxins MazF and ChpBK. Molecular Cell. 41: 625-35. PMID 21419338 DOI: 10.1016/j.molcel.2011.02.023  1
2011 Crawley SW, Gharaei MS, Ye Q, Yang Y, Raveh B, London N, Schueler-Furman O, Jia Z, Côté GP. Autophosphorylation activates Dictyostelium myosin II heavy chain kinase A by providing a ligand for an allosteric binding site in the alpha-kinase domain. The Journal of Biological Chemistry. 286: 2607-16. PMID 21071445 DOI: 10.1074/jbc.M110.177014  1
2010 Reshef D, Itzhaki Z, Schueler-Furman O. Increased sequence conservation of domain repeats in prokaryotic proteins. Trends in Genetics : Tig. 26: 383-7. PMID 20643491 DOI: 10.1016/j.tig.2010.06.003  1
2010 London N, Raveh B, Movshovitz-Attias D, Schueler-Furman O. Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions? Proteins. 78: 3140-9. PMID 20607702 DOI: 10.1002/prot.22785  1
2010 Raveh B, London N, Schueler-Furman O. Sub-angstrom modeling of complexes between flexible peptides and globular proteins. Proteins. 78: 2029-40. PMID 20455260 DOI: 10.1002/prot.22716  1
2010 Movshovitz-Attias D, London N, Schueler-Furman O. On the use of structural templates for high-resolution docking. Proteins. 78: 1939-49. PMID 20408170 DOI: 10.1002/prot.22710  1
2010 Kanarek N, London N, Schueler-Furman O, Ben-Neriah Y. Ubiquitination and degradation of the inhibitors of NF-kappaB. Cold Spring Harbor Perspectives in Biology. 2: a000166. PMID 20182612 DOI: 10.1101/cshperspect.a000166  1
2010 London N, Movshovitz-Attias D, Schueler-Furman O. The structural basis of peptide-protein binding strategies. Structure (London, England : 1993). 18: 188-99. PMID 20159464 DOI: 10.1016/j.str.2009.11.012  1
2009 Dassa B, London N, Stoddard BL, Schueler-Furman O, Pietrokovski S. Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family. Nucleic Acids Research. 37: 2560-73. PMID 19264795 DOI: 10.1093/nar/gkp095  1
2009 Raveh B, Enosh A, Schueler-Furman O, Halperin D. Rapid sampling of molecular motions with prior information constraints. Plos Computational Biology. 5: e1000295. PMID 19247429 DOI: 10.1371/journal.pcbi.1000295  1
2009 Ben-nun-Shaul O, Bronfeld H, Reshef D, Schueler-Furman O, Oppenheim A. The SV40 capsid is stabilized by a conserved pentapeptide hinge of the major capsid protein VP1. Journal of Molecular Biology. 386: 1382-91. PMID 19094992 DOI: 10.1016/j.jmb.2008.11.034  1
2008 London N, Schueler-Furman O. FunHunt: model selection based on energy landscape characteristics. Biochemical Society Transactions. 36: 1418-21. PMID 19021567 DOI: 10.1042/BST0361418  1
2008 Yanover C, Schueler-Furman O, Weiss Y. Minimizing and learning energy functions for side-chain prediction. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 899-911. PMID 18707538 DOI: 10.1089/cmb.2007.0158  1
2008 Kozakov D, Schueler-Furman O, Vajda S. Discrimination of near-native structures in protein-protein docking by testing the stability of local minima. Proteins. 72: 993-1004. PMID 18300245 DOI: 10.1002/prot.21997  1
2008 London N, Schueler-Furman O. Funnel hunting in a rough terrain: learning and discriminating native energy funnels. Structure (London, England : 1993). 16: 269-79. PMID 18275818 DOI: 10.1016/j.str.2007.11.013  1
2007 Goobes G, Goobes R, Shaw WJ, Gibson JM, Long JR, Raghunathan V, Schueler-Furman O, Popham JM, Baker D, Campbell CT, Stayton PS, Drobny GP. The structure, dynamics, and energetics of protein adsorption-lessons learned from adsorption of statherin to hydroxyapatite. Magnetic Resonance in Chemistry : Mrc. 45: S32-47. PMID 18172904 DOI: 10.1002/mrc.2123  1
2007 London N, Schueler-Furman O. Assessing the energy landscape of CAPRI targets by FunHunt. Proteins. 69: 809-15. PMID 17803233 DOI: 10.1002/prot.21736  1
2007 Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D. RosettaDock in CAPRI rounds 6-12. Proteins. 69: 758-63. PMID 17671979 DOI: 10.1002/prot.21684  1
2007 Dassa B, Amitai G, Caspi J, Schueler-Furman O, Pietrokovski S. Trans protein splicing of cyanobacterial split inteins in endogenous and exogenous combinations. Biochemistry. 46: 322-30. PMID 17198403 DOI: 10.1021/bi0611762  1
2006 Goobes G, Goobes R, Schueler-Furman O, Baker D, Stayton PS, Drobny GP. Folding of the C-terminal bacterial binding domain in statherin upon adsorption onto hydroxyapatite crystals. Proceedings of the National Academy of Sciences of the United States of America. 103: 16083-8. PMID 17060618 DOI: 10.1073/pnas.0607193103  1
2006 Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O. Learning MHC I--peptide binding. Bioinformatics (Oxford, England). 22: e227-35. PMID 16873476 DOI: 10.1093/bioinformatics/btl255  1
2006 Schueler-Furman O, Glick E, Segovia J, Linial M. Is GAS1 a co-receptor for the GDNF family of ligands? Trends in Pharmacological Sciences. 27: 72-7. PMID 16406089 DOI: 10.1016/j.tips.2005.12.004  1
2006 Levy C, Lee YN, Nechushtan H, Schueler-Furman O, Sonnenblick A, Hacohen S, Razin E. Identifying a common molecular mechanism for inhibition of MITF and STAT3 by PIAS3. Blood. 107: 2839-45. PMID 16368885 DOI: 10.1182/blood-2005-08-3325  1
2005 Schueler-Furman O, Wang C, Bradley P, Misura K, Baker D. Progress in modeling of protein structures and interactions. Science (New York, N.Y.). 310: 638-42. PMID 16254179 DOI: 10.1126/science.1112160  1
2005 Lacy DB, Lin HC, Melnyk RA, Schueler-Furman O, Reither L, Cunningham K, Baker D, Collier RJ. A model of anthrax toxin lethal factor bound to protective antigen. Proceedings of the National Academy of Sciences of the United States of America. 102: 16409-14. PMID 16251269 DOI: 10.1073/pnas.0508259102  1
2005 Schueler-Furman O, Wang C, Baker D. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins. 60: 187-94. PMID 15981249 DOI: 10.1002/prot.20556  1
2005 Wang C, Schueler-Furman O, Baker D. Improved side-chain modeling for protein-protein docking. Protein Science : a Publication of the Protein Society. 14: 1328-39. PMID 15802647 DOI: 10.1110/ps.041222905  1
2003 Bradley P, Chivian D, Meiler J, Misura KM, Rohl CA, Schief WR, Wedemeyer WJ, Schueler-Furman O, Murphy P, Schonbrun J, Strauss CE, Baker D. Rosetta predictions in CASP5: successes, failures, and prospects for complete automation. Proteins. 53: 457-68. PMID 14579334 DOI: 10.1002/prot.10552  1
2003 Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. Journal of Molecular Biology. 331: 281-99. PMID 12875852 DOI: 10.1016/S0022-2836(03)00670-3  1
2003 Schueler-Furman O, Baker D. Conserved residue clustering and protein structure prediction. Proteins. 52: 225-35. PMID 12833546 DOI: 10.1002/prot.10365  1
2003 Gray JJ, Moughon SE, Kortemme T, Schueler-Furman O, Misura KM, Morozov AV, Baker D. Protein-protein docking predictions for the CAPRI experiment. Proteins. 52: 118-22. PMID 12784377 DOI: 10.1002/prot.10384  1
2001 Schueler-Furman O, Altuvia Y, Margalit H. Differential effects of isomeric incorporation of fluorophenylalanines into PvuII endonuclease Proteins: Structure, Function and Genetics. 45: 55-61. PMID 11536360 DOI: 10.1002/prot.1123  1
2000 Schueler-Furman O, Altuvia Y, Sette A, Margalit H. Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles. Protein Science : a Publication of the Protein Society. 9: 1838-46. PMID 11045629 DOI: 10.1110/ps.9.9.1838  1
1998 Schueler-Furman O, Elber R, Margalit H. Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes. Folding & Design. 3: 549-64. PMID 9889166 DOI: 10.1016/S1359-0278(98)00070-4  1
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