| Year |
Citation |
Score |
| 2020 |
Hsu J, Huang HT, Lee CT, Choudhuri A, Wilson NK, Abraham BJ, Moignard V, Kucinski I, Yu S, Hyde RK, Tober J, Cai X, Li Y, Guo Y, Yang S, ... ... Tan K, et al. CHD7 and Runx1 interaction provides a braking mechanism for hematopoietic differentiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32883883 DOI: 10.1073/Pnas.2003228117 |
0.396 |
|
| 2020 |
Gao P, Chen C, Howell ED, Li Y, Tober J, Uzun Y, He B, Gao L, Zhu Q, Siekmann AF, Speck NA, Tan K. Transcriptional regulatory network controlling the ontogeny of hematopoietic stem cells. Genes & Development. PMID 32499402 DOI: 10.1101/Gad.338202.120 |
0.411 |
|
| 2020 |
Zhu Q, Gao P, Tober J, Bennett L, Chen C, Uzun Y, Li Y, Howell ED, Mumau M, Yu W, He B, Speck NA, Tan K. Developmental trajectory of pre-hematopoietic stem cell formation from endothelium. Blood. PMID 32392346 DOI: 10.1182/Blood.2020004801 |
0.333 |
|
| 2019 |
Chen C, Yu W, Tober J, Gao P, He B, Lee K, Trieu T, Blobel GA, Speck NA, Tan K. Spatial Genome Re-organization between Fetal and Adult Hematopoietic Stem Cells. Cell Reports. 29: 4200-4211.e7. PMID 31851943 DOI: 10.1016/J.Celrep.2019.11.065 |
0.36 |
|
| 2019 |
Packer JS, Zhu Q, Huynh C, Sivaramakrishnan P, Preston E, Dueck H, Stefanik D, Tan K, Trapnell C, Kim J, Waterston RH, Murray JI. A lineage-resolved molecular atlas of embryogenesis at single-cell resolution. Science (New York, N.Y.). PMID 31488706 DOI: 10.1126/Science.Aax1971 |
0.32 |
|
| 2019 |
Hu Y, Chen CH, Ding YY, Wen X, Wang B, Gao L, Tan K. Optimal control nodes in disease-perturbed networks as targets for combination therapy. Nature Communications. 10: 2180. PMID 31097707 DOI: 10.1038/S41467-019-10215-Y |
0.355 |
|
| 2019 |
Peng T, Zhu Q, Yin P, Tan K. SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data. Genome Biology. 20: 88. PMID 31060596 DOI: 10.1186/S13059-019-1681-8 |
0.322 |
|
| 2019 |
Taylor DM, Aronow BJ, Tan K, Bernt K, Salomonis N, Greene CS, Frolova A, Henrickson SE, Wells A, Pei L, Jaiswal JK, Whitsett J, Hamilton KE, MacParland SA, Kelsen J, et al. The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution. Developmental Cell. PMID 30930166 DOI: 10.1016/J.Devcel.2019.03.001 |
0.346 |
|
| 2019 |
Nicetto D, Donahue G, Jain T, Peng T, Sidoli S, Sheng L, Montavon T, Becker JS, Grindheim JM, Blahnik K, Garcia BA, Tan K, Bonasio R, Jenuwein T, Zaret KS. H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification. Science (New York, N.Y.). PMID 30606806 DOI: 10.1126/Science.Aau0583 |
0.366 |
|
| 2019 |
Estevez B, Borst S, Jarocha DJ, Sudunagunta V, Gonzalez M, Gao P, Tan K, French DL, Gadue P, Poncz M. The Inherited Platelet Disorder of RUNX1 Haploinsufficiency (Familial Platelet Disorder with Associated Myeloid Malignancy (FPDMM)) Has a Marked Deficiency of Megakaryocyte-Biased Hematopoietic Progenitor Cells: Mechanistic Studies and Drug Correction Blood. 134: 220-220. DOI: 10.1182/Blood-2019-124851 |
0.346 |
|
| 2019 |
Speck N, Zhu Q, Gao P, Tober J, Bennett L, Chen C, Uzun Y, Li Y, Tan K. Developmental Biology of the Blood System Blood. 134: SCI-29-SCI-29. DOI: 10.1182/Blood-2019-121283 |
0.319 |
|
| 2019 |
Howell E, He B, Lakadamyali M, Speck N, Tan K, Gao P, Yzaguirre A. 2010 - IDENTIFYING NECESSARY CHROMATIN STATES AND TARGETS FOR HEMOGENIC SPECIFICATION AND REPROGRAMMING Experimental Hematology. 76: S45. DOI: 10.1016/J.Exphem.2019.06.284 |
0.352 |
|
| 2018 |
Gao L, Tober J, Gao P, Chen C, Zhu Q, Tan K, Speck NA. RUNX1 and the endothelial origin of blood. Experimental Hematology. PMID 30391350 DOI: 10.1016/J.Exphem.2018.10.009 |
0.361 |
|
| 2018 |
Behera V, Evans P, Face CJ, Hamagami N, Sankaranarayanan L, Keller CA, Giardine B, Tan K, Hardison RC, Shi J, Blobel GA. Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility. Nature Communications. 9: 782. PMID 29472540 DOI: 10.1038/S41467-018-03082-6 |
0.369 |
|
| 2018 |
Gao L, Uzun Y, Gao P, He B, Ma X, Wang J, Han S, Tan K. Identifying noncoding risk variants using disease-relevant gene regulatory networks. Nature Communications. 9: 702. PMID 29453388 DOI: 10.1038/S41467-018-03133-Y |
0.334 |
|
| 2018 |
He B, Gao P, Ding Y, Chen C, Kim H, Hunger SP, Tasian SK, Tan K. Abstract 2280: Systematic analysis of causal noncoding mutations in pediatric B-cell acute lymphoblastic leukemia Cancer Research. 78: 2280-2280. DOI: 10.1158/1538-7445.Am2018-2280 |
0.305 |
|
| 2017 |
Yu W, He B, Tan K. Identifying topologically associating domains and subdomains by Gaussian Mixture model And Proportion test. Nature Communications. 8: 535. PMID 28912419 DOI: 10.1038/S41467-017-00478-8 |
0.331 |
|
| 2017 |
Li F, He B, Ma X, Yu S, Bhave RR, Lentz SR, Tan K, Guzman ML, Zhao C, Xue HH. Prostaglandin E1 and Its Analog Misoprostol Inhibit Human CML Stem Cell Self-Renewal via EP4 Receptor Activation and Repression of AP-1. Cell Stem Cell. PMID 28844837 DOI: 10.1016/J.Stem.2017.08.001 |
0.319 |
|
| 2016 |
He B, Xing S, Chen C, Gao P, Teng L, Shan Q, Gullicksrud JA, Martin MD, Yu S, Harty JT, Badovinac VP, Tan K, Xue HH. CD8(+) T Cells Utilize Highly Dynamic Enhancer Repertoires and Regulatory Circuitry in Response to Infections. Immunity. PMID 27986453 DOI: 10.1016/J.Immuni.2016.11.009 |
0.346 |
|
| 2016 |
Gao T, He B, Liu S, Zhu H, Tan K, Qian J. EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types. Bioinformatics (Oxford, England). PMID 27515742 DOI: 10.1093/Bioinformatics/Btw495 |
0.302 |
|
| 2016 |
Teng L, He B, Wang J, Tan K. 4DGenome: a comprehensive database of chromatin interactions. Bioinformatics (Oxford, England). PMID 27371723 DOI: 10.1093/Bioinformatics/Btw375 |
0.315 |
|
| 2016 |
He B, Tan K. Understanding transcriptional regulatory networks using computational models. Current Opinion in Genetics & Development. 37: 101-108. PMID 26950762 DOI: 10.1016/J.Gde.2016.02.002 |
0.327 |
|
| 2016 |
Holmfeldt P, Ganuza M, Marathe H, He B, Hall T, Kang G, Moen J, Pardieck J, Saulsberry AC, Cico A, Gaut L, McGoldrick D, Finkelstein D, Tan K, McKinney-Freeman S. Functional screen identifies regulators of murine hematopoietic stem cell repopulation. The Journal of Experimental Medicine. PMID 26880577 DOI: 10.1084/Jem.20150806 |
0.367 |
|
| 2016 |
Agrawal R, Gupta P, Tan KA, Cheung CM, Wong TY, Cheng CY. Choroidal vascularity index as a measure of vascular status of the choroid: Measurements in healthy eyes from a population-based study. Scientific Reports. 6: 21090. PMID 26868048 DOI: 10.1038/Srep21090 |
0.412 |
|
| 2016 |
Huang J, Wang K, Wei P, Liu X, Liu X, Tan K, Boerwinkle E, Potash JB, Han S. FLAGS: A Flexible and Adaptive Association Test for Gene Sets Using Summary Statistics. Genetics. PMID 26773050 DOI: 10.1534/Genetics.115.185009 |
0.307 |
|
| 2016 |
Agrawal R, Salman M, Tan KA, Karampelas M, Sim DA, Keane PA, Pavesio C. Choroidal vascularity index (CVI) - A novel optical coherence tomography parameter for monitoring patients with panuveitis? Plos One. 11. DOI: 10.1371/journal.pone.0146344 |
0.383 |
|
| 2015 |
Cao Z, Chen C, He B, Tan K, Lu C. A microfluidic device for epigenomic profiling using 100 cells. Nature Methods. PMID 26214128 DOI: 10.1038/Nmeth.3488 |
0.324 |
|
| 2015 |
Cai X, Gao L, Teng L, Ge J, Oo ZM, Kumar AR, Gilliland DG, Mason PJ, Tan K, Speck NA. Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells. Cell Stem Cell. 17: 165-77. PMID 26165925 DOI: 10.1016/J.Stem.2015.06.002 |
0.321 |
|
| 2015 |
Ma X, Gao L, Karamanlidis G, Gao P, Lee CF, Garcia-Menendez L, Tian R, Tan K. Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks. Plos Computational Biology. 11: e1004332. PMID 26083688 DOI: 10.1371/Journal.Pcbi.1004332 |
0.325 |
|
| 2014 |
Li Y, Esain V, Teng L, Xu J, Kwan W, Frost IM, Yzaguirre AD, Cai X, Cortes M, Maijenburg MW, Tober J, Dzierzak E, Orkin SH, Tan K, North TE, et al. Inflammatory signaling regulates embryonic hematopoietic stem and progenitor cell production. Genes & Development. 28: 2597-612. PMID 25395663 DOI: 10.1101/Gad.253302.114 |
0.337 |
|
| 2014 |
He B, Chen C, Teng L, Tan K. Global view of enhancer-promoter interactome in human cells. Proceedings of the National Academy of Sciences of the United States of America. 111: E2191-9. PMID 24821768 DOI: 10.1073/Pnas.1320308111 |
0.349 |
|
| 2014 |
Teng L, He B, Gao P, Gao L, Tan K. Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets. Nucleic Acids Research. 42: e24. PMID 24217919 DOI: 10.1093/Nar/Gkt1105 |
0.387 |
|
| 2014 |
Li Y, Esain V, Teng L, Xu J, Frost I, Kwan W, Yzaguirre AD, Maijenberg MW, Orkin SH, Tan K, North TE, Speck NA. Inflammatory Signaling Regulates Embryonic Hematopoietic Stem and Lymphoid Progenitor Cell Formation Blood. 124: 2902-2902. DOI: 10.1182/Blood.V124.21.2902.2902 |
0.335 |
|
| 2013 |
Soshnev AA, Baxley RM, Manak JR, Tan K, Geyer PK. The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary. Development (Cambridge, England). 140: 3613-23. PMID 23884443 DOI: 10.1242/Dev.094953 |
0.37 |
|
| 2012 |
Kim J, Gao L, Tan K. Multi-analyte network markers for tumor prognosis. Plos One. 7: e52973. PMID 23300836 DOI: 10.1371/Journal.Pone.0052973 |
0.339 |
|
| 2012 |
Teng L, Tan K. Finding combinatorial histone code by semi-supervised biclustering. Bmc Genomics. 13: 301. PMID 22759587 DOI: 10.1186/1471-2164-13-301 |
0.322 |
|
| 2012 |
Fan R, Bonde S, Gao P, Sotomayor B, Chen C, Mouw T, Zavazava N, Tan K. Dynamic HoxB4-regulatory network during embryonic stem cell differentiation to hematopoietic cells. Blood. 119: e139-47. PMID 22438249 DOI: 10.1182/Blood-2011-12-396754 |
0.413 |
|
| 2012 |
Soshnev AA, He B, Baxley RM, Jiang N, Hart CM, Tan K, Geyer PK. Genome-wide studies of the multi-zinc finger Drosophila Suppressor of Hairy-wing protein in the ovary. Nucleic Acids Research. 40: 5415-31. PMID 22406832 DOI: 10.1093/Nar/Gks225 |
0.351 |
|
| 2011 |
Teng L, Firpi HA, Tan K. Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers. Nucleic Acids Research. 39: 7371-9. PMID 21685454 DOI: 10.1093/Nar/Gkr476 |
0.384 |
|
| 2011 |
Ucar D, Hu Q, Tan K. Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering. Nucleic Acids Research. 39: 4063-75. PMID 21266477 DOI: 10.1093/Nar/Gkr016 |
0.342 |
|
| 2010 |
Kuo D, Licon K, Bandyopadhyay S, Chuang R, Luo C, Catalana J, Ravasi T, Tan K, Ideker T. Coevolution within a transcriptional network by compensatory trans and cis mutations. Genome Research. 20: 1672-8. PMID 20978140 DOI: 10.1101/Gr.111765.110 |
0.627 |
|
| 2010 |
Kuo D, Tan K, Zinman G, Ravasi T, Bar-Joseph Z, Ideker T. Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering. Genome Biology. 11: R77. PMID 20653936 DOI: 10.1186/Gb-2010-11-7-R77 |
0.499 |
|
| 2010 |
Firpi HA, Ucar D, Tan K. Discover regulatory DNA elements using chromatin signatures and artificial neural network. Bioinformatics (Oxford, England). 26: 1579-86. PMID 20453004 DOI: 10.1093/Bioinformatics/Btq248 |
0.349 |
|
| 2010 |
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell. 140: 744-52. PMID 20211142 DOI: 10.1016/J.Cell.2010.01.044 |
0.564 |
|
| 2009 |
Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Tan K, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/Ng.375 |
0.41 |
|
| 2008 |
Tan K, Feizi H, Luo C, Fan SH, Ravasi T, Ideker TG. A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. Proceedings of the National Academy of Sciences of the United States of America. 105: 2934-9. PMID 18287073 DOI: 10.1073/Pnas.0708670105 |
0.575 |
|
| 2008 |
Tan K, Tegner J, Ravasi T. Integrated approaches to uncovering transcription regulatory networks in mammalian cells. Genomics. 91: 219-31. PMID 18191937 DOI: 10.1016/J.Ygeno.2007.11.005 |
0.356 |
|
| 2007 |
Tan K, Shlomi T, Feizi H, Ideker T, Sharan R. Transcriptional regulation of protein complexes within and across species. Proceedings of the National Academy of Sciences of the United States of America. 104: 1283-8. PMID 17227853 DOI: 10.1073/Pnas.0606914104 |
0.544 |
|
| 2005 |
Tan K, McCue LA, Stormo GD. Making connections between novel transcription factors and their DNA motifs. Genome Research. 15: 312-20. PMID 15653829 DOI: 10.1101/Gr.3069205 |
0.568 |
|
| 2003 |
Liu J, Tan K, Stormo GD. Computational identification of the Spo0A-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria. Nucleic Acids Research. 31: 6891-903. PMID 14627822 DOI: 10.1093/Nar/Gkg879 |
0.582 |
|
| 2002 |
Stormo GD, Tan K. Mining genome databases to identify and understand new gene regulatory systems. Current Opinion in Microbiology. 5: 149-53. PMID 11934610 DOI: 10.1016/S1369-5274(02)00309-0 |
0.561 |
|
| 2001 |
Tan K, Moreno-Hagelsieb G, Collado-Vides J, Stormo GD. A comparative genomics approach to prediction of new members of regulons Genome Research. 11: 566-584. PMID 11282972 DOI: 10.1101/Gr.149301 |
0.578 |
|
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