| Year |
Citation |
Score |
| 2023 |
Jin Z, Sato Y, Kawashima M, Kanehisa M. KEGG tools for classification and analysis of viral proteins. Protein Science : a Publication of the Protein Society. e4820. PMID 37881892 DOI: 10.1002/pro.4820 |
0.301 |
|
| 2019 |
Aramaki T, Blanc-Mathieu R, Endo H, Ohkubo K, Kanehisa M, Goto S, Ogata H. KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold. Bioinformatics (Oxford, England). PMID 31742321 DOI: 10.1093/Bioinformatics/Btz859 |
0.403 |
|
| 2019 |
Kanehisa M. Toward understanding the origin and evolution of cellular organisms. Protein Science : a Publication of the Protein Society. PMID 31441146 DOI: 10.1002/Pro.3715 |
0.353 |
|
| 2019 |
Kanehisa M, Sato Y. KEGG Mapper for inferring cellular functions from protein sequences. Protein Science : a Publication of the Protein Society. PMID 31423653 DOI: 10.1002/Pro.3711 |
0.416 |
|
| 2018 |
Kanehisa M, Sato Y, Furumichi M, Morishima K, Tanabe M. New approach for understanding genome variations in KEGG. Nucleic Acids Research. PMID 30321428 DOI: 10.1093/Nar/Gky962 |
0.405 |
|
| 2018 |
Kanehisa M. Inferring Antimicrobial Resistance from Pathogen Genomes in KEGG. Methods in Molecular Biology (Clifton, N.J.). 1807: 225-239. PMID 30030815 DOI: 10.1007/978-1-4939-8561-6_17 |
0.381 |
|
| 2017 |
Kanehisa M. Enzyme Annotation and Metabolic Reconstruction Using KEGG. Methods in Molecular Biology (Clifton, N.J.). 1611: 135-145. PMID 28451977 DOI: 10.1007/978-1-4939-7015-5_11 |
0.425 |
|
| 2016 |
Kanehisa M, Furumichi M, Tanabe M, Sato Y, Morishima K. KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Research. PMID 27899662 DOI: 10.1093/Nar/Gkw1092 |
0.415 |
|
| 2016 |
Moriya Y, Yamada T, Okuda S, Nakagawa Z, Kotera M, Tokimatsu T, Kanehisa M, Goto S. Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. Journal of Chemical Information and Modeling. PMID 26822930 DOI: 10.1021/Acs.Jcim.5B00216 |
0.53 |
|
| 2016 |
Kanehisa M. KEGG Bioinformatics Resource for Plant Genomics and Metabolomics. Methods in Molecular Biology (Clifton, N.J.). 1374: 55-70. PMID 26519400 DOI: 10.1007/978-1-4939-3167-5_3 |
0.396 |
|
| 2015 |
Kanehisa M, Sato Y, Morishima K. BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. Journal of Molecular Biology. PMID 26585406 DOI: 10.1016/J.Jmb.2015.11.006 |
0.429 |
|
| 2015 |
Kanehisa M, Sato Y, Kawashima M, Furumichi M, Tanabe M. KEGG as a reference resource for gene and protein annotation. Nucleic Acids Research. PMID 26476454 DOI: 10.1093/Nar/Gkv1070 |
0.448 |
|
| 2015 |
Aoki-Kinoshita KF, Kanehisa M. Glycomic analysis using KEGG GLYCAN. Methods in Molecular Biology (Clifton, N.J.). 1273: 97-107. PMID 25753705 DOI: 10.1007/978-1-4939-2343-4_7 |
0.348 |
|
| 2014 |
Kotera M, Nishimura Y, Nakagawa Z, Muto A, Moriya Y, Okamoto S, Kawashima S, Katayama T, Tokimatsu T, Kanehisa M, Goto S. PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list. Journal of Bioinformatics and Computational Biology. 12: 1442001. PMID 25385078 DOI: 10.1142/S0219720014420013 |
0.312 |
|
| 2014 |
Yamanishi Y, Kotera M, Moriya Y, Sawada R, Kanehisa M, Goto S. DINIES: drug-target interaction network inference engine based on supervised analysis. Nucleic Acids Research. 42: W39-45. PMID 24838565 DOI: 10.1093/Nar/Gku337 |
0.372 |
|
| 2014 |
Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Research. 42: D199-205. PMID 24214961 DOI: 10.1093/Nar/Gkt1076 |
0.408 |
|
| 2014 |
Kleensang A, Maertens A, Rosenberg M, Fitzpatrick S, Lamb J, Auerbach S, Brennan R, Crofton KM, Gordon B, Fornace AJ, Gaido K, Gerhold D, Haw R, Henney A, Ma'ayan A, ... ... Kanehisa M, et al. t4 workshop report: Pathways of Toxicity. Altex. 31: 53-61. PMID 24127042 DOI: 10.14573/Altex.1309261 |
0.321 |
|
| 2014 |
Kotera M, Goto S, Kanehisa M. Predictive genomic and metabolomic analysis for the standardization of enzyme data Perspectives in Science. 1: 24-32. DOI: 10.1016/J.Pisc.2014.02.003 |
0.357 |
|
| 2013 |
Kotera M, Tabei Y, Yamanishi Y, Moriya Y, Tokimatsu T, Kanehisa M, Goto S. KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. Bmc Systems Biology. 7: S2. PMID 24564846 DOI: 10.1186/1752-0509-7-S6-S2 |
0.31 |
|
| 2013 |
Kanehisa M. Chemical and genomic evolution of enzyme-catalyzed reaction networks. Febs Letters. 587: 2731-7. PMID 23816707 DOI: 10.1016/J.Febslet.2013.06.026 |
0.372 |
|
| 2013 |
Muto A, Kotera M, Tokimatsu T, Nakagawa Z, Goto S, Kanehisa M. Modular architecture of metabolic pathways revealed by conserved sequences of reactions. Journal of Chemical Information and Modeling. 53: 613-22. PMID 23384306 DOI: 10.1021/Ci3005379 |
0.367 |
|
| 2013 |
Nakaya A, Katayama T, Itoh M, Hiranuka K, Kawashima S, Moriya Y, Okuda S, Tanaka M, Tokimatsu T, Yamanishi Y, Yoshizawa AC, Kanehisa M, Goto S. KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Research. 41: D353-7. PMID 23193276 DOI: 10.1093/Nar/Gks1239 |
0.427 |
|
| 2013 |
Kanehisa M. Molecular network analysis of diseases and drugs in KEGG. Methods in Molecular Biology (Clifton, N.J.). 939: 263-75. PMID 23192552 DOI: 10.1007/978-1-62703-107-3_17 |
0.369 |
|
| 2013 |
Muto A, Kotera M, Tokimatsu T, Moriya Y, Nakagawa Z, Kanehisa M, Goto S. 3P266 Identification of metabolic pathway modules by conserved reaction sequences and its application to evolutionary analysis(22D. Bioinformatics: Molecular evolution,Poster) Seibutsu Butsuri. 53: S256. DOI: 10.2142/Biophys.53.S256_1 |
0.343 |
|
| 2012 |
Takami H, Taniguchi T, Moriya Y, Kuwahara T, Kanehisa M, Goto S. Evaluation method for the potential functionome harbored in the genome and metagenome. Bmc Genomics. 13: 699. PMID 23234305 DOI: 10.1186/1471-2164-13-699 |
0.36 |
|
| 2012 |
Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, ... ... Kanehisa M, et al. Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation. Mbio. 3: e00204-12. PMID 22951932 DOI: 10.1128/Mbio.00204-12 |
0.312 |
|
| 2012 |
Kotera M, Yamanishi Y, Moriya Y, Kanehisa M, Goto S. GENIES: gene network inference engine based on supervised analysis. Nucleic Acids Research. 40: W162-7. PMID 22610856 DOI: 10.1093/Nar/Gks459 |
0.416 |
|
| 2012 |
Kotera M, Hirakawa M, Tokimatsu T, Goto S, Kanehisa M. The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals. Methods in Molecular Biology (Clifton, N.J.). 802: 19-39. PMID 22130871 DOI: 10.1007/978-1-61779-400-1_2 |
0.341 |
|
| 2012 |
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research. 40: D109-14. PMID 22080510 DOI: 10.1093/Nar/Gkr988 |
0.416 |
|
| 2011 |
Kotera M, Tokimatsu T, Kanehisa M, Goto S. MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites. Bmc Bioinformatics. 12: S1. PMID 22373367 DOI: 10.1186/1471-2105-12-S14-S1 |
0.338 |
|
| 2011 |
Yamada T, Letunic I, Okuda S, Kanehisa M, Bork P. iPath2.0: interactive pathway explorer. Nucleic Acids Research. 39: W412-5. PMID 21546551 DOI: 10.1093/Nar/Gkr313 |
0.506 |
|
| 2011 |
Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama K, Kawamura S, Otsuka H, ... ... Kanehisa M, et al. KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Research. 39: D677-84. PMID 21097783 DOI: 10.1093/Nar/Gkq989 |
0.386 |
|
| 2010 |
Yamanishi Y, Kotera M, Kanehisa M, Goto S. Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. Bioinformatics (Oxford, England). 26: i246-54. PMID 20529913 DOI: 10.1093/Bioinformatics/Btq176 |
0.308 |
|
| 2010 |
Hattori M, Tanaka N, Kanehisa M, Goto S. SIMCOMP/SUBCOMP: chemical structure search servers for network analyses. Nucleic Acids Research. 38: W652-6. PMID 20460463 DOI: 10.1093/Nar/Gkq367 |
0.394 |
|
| 2010 |
Moriya Y, Shigemizu D, Hattori M, Tokimatsu T, Kotera M, Goto S, Kanehisa M. PathPred: an enzyme-catalyzed metabolic pathway prediction server. Nucleic Acids Research. 38: W138-43. PMID 20435670 DOI: 10.1093/Nar/Gkq318 |
0.354 |
|
| 2010 |
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Research. 38: D355-60. PMID 19880382 DOI: 10.1093/Nar/Gkp896 |
0.324 |
|
| 2010 |
Diez D, Hayes N, Joannin N, Normark J, Kanehisa M, Wahlgren M, Wheelock CE, Goto S. varDB: a database of antigenic variant sequences--current status and future prospects. Acta Tropica. 114: 144-51. PMID 19539588 DOI: 10.1016/J.Actatropica.2009.06.006 |
0.307 |
|
| 2009 |
Yamanishi Y, Hattori M, Kotera M, Goto S, Kanehisa M. E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. Bioinformatics (Oxford, England). 25: i179-86. PMID 19477985 DOI: 10.1093/Bioinformatics/Btp223 |
0.332 |
|
| 2009 |
Wheelock CE, Wheelock AM, Kawashima S, Diez D, Kanehisa M, van Erk M, Kleemann R, Haeggström JZ, Goto S. Systems biology approaches and pathway tools for investigating cardiovascular disease. Molecular Biosystems. 5: 588-602. PMID 19462016 DOI: 10.1039/B902356A |
0.33 |
|
| 2009 |
Hashimoto K, Tokimatsu T, Kawano S, Yoshizawa AC, Okuda S, Goto S, Kanehisa M. Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans. Carbohydrate Research. 344: 881-7. PMID 19327755 DOI: 10.1016/J.Carres.2009.03.001 |
0.373 |
|
| 2009 |
Hirakawa M, Nishihara H, Kanehisa M, Okada N. Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes. Gene. 441: 100-10. PMID 19166919 DOI: 10.1016/J.Gene.2008.12.009 |
0.37 |
|
| 2008 |
Hayes CN, Diez D, Joannin N, Honda W, Kanehisa M, Wahlgren M, Wheelock CE, Goto S. varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. Bioinformatics (Oxford, England). 24: 2564-5. PMID 18776192 DOI: 10.1093/Bioinformatics/Btn477 |
0.347 |
|
| 2008 |
Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P, Goto S, Kanehisa M. KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Research. 36: W423-6. PMID 18477636 DOI: 10.1093/Nar/Gkn282 |
0.525 |
|
| 2008 |
Kojima KK, Kanehisa M. Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture. Molecular Biology and Evolution. 25: 1395-404. PMID 18391066 DOI: 10.1093/Molbev/Msn081 |
0.355 |
|
| 2008 |
Letunic I, Yamada T, Kanehisa M, Bork P. iPath: interactive exploration of biochemical pathways and networks. Trends in Biochemical Sciences. 33: 101-3. PMID 18276143 DOI: 10.1016/J.Tibs.2008.01.001 |
0.528 |
|
| 2008 |
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. KEGG for linking genomes to life and the environment. Nucleic Acids Research. 36: D480-4. PMID 18077471 DOI: 10.1093/Nar/Gkm882 |
0.38 |
|
| 2008 |
Kawashima S, Pokarowski P, Pokarowska M, Kolinski A, Katayama T, Kanehisa M. AAindex: amino acid index database, progress report 2008. Nucleic Acids Research. 36: D202-5. PMID 17998252 DOI: 10.1093/Nar/Gkm998 |
0.31 |
|
| 2008 |
Hashimoto K, Yoshizawa AC, Okuda S, Kuma K, Goto S, Kanehisa M. The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes. Journal of Lipid Research. 49: 183-91. PMID 17921532 DOI: 10.1194/Jlr.M700377-Jlr200 |
0.345 |
|
| 2007 |
Kawashima S, Kawashima T, Putnam NH, Rokhsar DS, Wada H, Kanehisa M. Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes. Genome Informatics. International Conference On Genome Informatics. 19: 50-60. PMID 18546504 DOI: 10.11234/Gi1990.19.50 |
0.316 |
|
| 2007 |
Muto A, Hattori M, Kanehisa M. Analysis of common substructures of metabolic compounds within the different organism groups. Genome Informatics. International Conference On Genome Informatics. 18: 299-307. PMID 18546497 DOI: 10.11234/Gi1990.18.299 |
0.338 |
|
| 2007 |
Suga A, Yamanishi Y, Hashimoto K, Goto S, Kanehisa M. An improved scoring scheme for predicting glycan structures from gene expression data. Genome Informatics. International Conference On Genome Informatics. 18: 237-46. PMID 18546491 DOI: 10.11234/Gi1990.18.237 |
0.329 |
|
| 2007 |
Huang J, Kawashima S, Kanehisa M. New amino acid indices based on residue network topology. Genome Informatics. International Conference On Genome Informatics. 18: 152-61. PMID 18546483 DOI: 10.11234/Gi1990.18.152 |
0.305 |
|
| 2007 |
Masoudi-Nejad A, Goto S, Endo TR, Kanehisa M. KEGG bioinformatics resource for plant genomics research. Methods in Molecular Biology (Clifton, N.J.). 406: 437-58. PMID 18287706 DOI: 10.1007/978-1-59745-535-0_21 |
0.418 |
|
| 2007 |
Kadowaki T, Wheelock CE, Adachi T, Kudo T, Okamoto S, Tanaka N, Tonomura K, Tsujimoto G, Mamitsuka H, Goto S, Kanehisa M. Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis. Environmental Science & Technology. 41: 7997-8003. PMID 18186328 DOI: 10.1021/Es062751S |
0.359 |
|
| 2007 |
Aoki-Kinoshita KF, Kanehisa M. Gene annotation and pathway mapping in KEGG. Methods in Molecular Biology (Clifton, N.J.). 396: 71-91. PMID 18025687 DOI: 10.1007/978-1-59745-515-2_6 |
0.438 |
|
| 2007 |
Fujita M, Mihara H, Goto S, Esaki N, Kanehisa M. Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach. Bmc Bioinformatics. 8: 225. PMID 17597547 DOI: 10.1186/1471-2105-8-225 |
0.368 |
|
| 2007 |
Schwartz JM, Gaugain C, Nacher JC, de Daruvar A, Kanehisa M. Observing metabolic functions at the genome scale. Genome Biology. 8: R123. PMID 17594483 DOI: 10.1186/Gb-2007-8-6-R123 |
0.351 |
|
| 2007 |
Hu Z, Ng DM, Yamada T, Chen C, Kawashima S, Mellor J, Linghu B, Kanehisa M, Stuart JM, DeLisi C. VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research. 35: W625-32. PMID 17586824 DOI: 10.1093/Nar/Gkm295 |
0.657 |
|
| 2007 |
Limviphuvadh V, Tanaka S, Goto S, Ueda K, Kanehisa M. The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). Bioinformatics (Oxford, England). 23: 2129-38. PMID 17553855 DOI: 10.1093/Bioinformatics/Btm307 |
0.348 |
|
| 2007 |
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Research. 35: W182-5. PMID 17526522 DOI: 10.1093/Nar/Gkm321 |
0.415 |
|
| 2007 |
Oh M, Yamada T, Hattori M, Goto S, Kanehisa M. Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways. Journal of Chemical Information and Modeling. 47: 1702-12. PMID 17516640 DOI: 10.1021/Ci700006F |
0.522 |
|
| 2007 |
Hu Z, Mellor J, Wu J, Kanehisa M, Stuart JM, DeLisi C. Towards zoomable multidimensional maps of the cell. Nature Biotechnology. 25: 547-54. PMID 17483841 DOI: 10.1038/Nbt1304 |
0.568 |
|
| 2007 |
Masoudi-Nejad A, Goto S, Jauregui R, Ito M, Kawashima S, Moriya Y, Endo TR, Kanehisa M. EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG. Plant Physiology. 144: 857-66. PMID 17468225 DOI: 10.1104/Pp.106.095059 |
0.422 |
|
| 2007 |
Minowa Y, Araki M, Kanehisa M. Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes. Journal of Molecular Biology. 368: 1500-17. PMID 17400247 DOI: 10.1016/J.Jmb.2007.02.099 |
0.372 |
|
| 2007 |
Yamanishi Y, Mihara H, Osaki M, Muramatsu H, Esaki N, Sato T, Hizukuri Y, Goto S, Kanehisa M. Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa. The Febs Journal. 274: 2262-73. PMID 17388807 DOI: 10.1111/J.1742-4658.2007.05763.X |
0.4 |
|
| 2007 |
Okamoto S, Yamanishi Y, Ehira S, Kawashima S, Tonomura K, Kanehisa M. Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis. Proteomics. 7: 900-9. PMID 17370268 DOI: 10.1002/Pmic.200600862 |
0.406 |
|
| 2007 |
Gutteridge A, Kanehisa M, Goto S. Regulation of metabolic networks by small molecule metabolites. Bmc Bioinformatics. 8: 88. PMID 17352833 DOI: 10.1186/1471-2105-8-88 |
0.328 |
|
| 2007 |
Okuda S, Kawashima S, Kobayashi K, Ogasawara N, Kanehisa M, Goto S. Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. Bmc Genomics. 8: 48. PMID 17298663 DOI: 10.1186/1471-2164-8-48 |
0.366 |
|
| 2007 |
Sugita C, Ogata K, Shikata M, Jikuya H, Takano J, Furumichi M, Kanehisa M, Omata T, Sugiura M, Sugita M. Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization. Photosynthesis Research. 93: 55-67. PMID 17211581 DOI: 10.1007/S11120-006-9122-4 |
0.399 |
|
| 2007 |
SATO T, YAMANISHI Y, KANEHISA M, TOH H. Prediction of Protein-Protein Interactions by Using Co-Evolutionary Information Seibutsu Butsuri. 47: 004-011. DOI: 10.2142/Biophys.47.004 |
0.321 |
|
| 2006 |
Tanaka M, Yamada T, Itoh M, Okuda S, Goto S, Kanehisa M. Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes. Genome Informatics. International Conference On Genome Informatics. 17: 230-9. PMID 17503372 DOI: 10.11234/Gi1990.17.230 |
0.515 |
|
| 2006 |
Hashimoto K, Yoshizawa AC, Saito K, Yamada T, Kanehisa M. The repertoire of desaturases for unsaturated fatty acid synthesis in 397 genomes. Genome Informatics. International Conference On Genome Informatics. 17: 173-83. PMID 17503367 DOI: 10.11234/Gi1990.17.173 |
0.478 |
|
| 2006 |
Huang J, Gutteridge A, Honda W, Kanehisa M. MIMOX: a web tool for phage display based epitope mapping. Bmc Bioinformatics. 7: 451. PMID 17038191 DOI: 10.1186/1471-2105-7-451 |
0.33 |
|
| 2006 |
Sato T, Yamanishi Y, Horimoto K, Kanehisa M, Toh H. Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics (Oxford, England). 22: 2488-92. PMID 16882650 DOI: 10.1093/Bioinformatics/Btl419 |
0.319 |
|
| 2006 |
Yoshizawa AC, Kawashima S, Okuda S, Fujita M, Itoh M, Moriya Y, Hattori M, Kanehisa M. Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic. Traffic (Copenhagen, Denmark). 7: 1104-18. PMID 16882042 DOI: 10.1111/J.1600-0854.2006.00451.X |
0.345 |
|
| 2006 |
Nacher JC, Schwartz JM, Kanehisa M, Akutsu T. Identification of metabolic units induced by environmental signals. Bioinformatics (Oxford, England). 22: e375-83. PMID 16873496 DOI: 10.1093/Bioinformatics/Btl202 |
0.381 |
|
| 2006 |
Aoki-Kinoshita KF, Ueda N, Mamitsuka H, Kanehisa M. ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. Bioinformatics (Oxford, England). 22: e25-34. PMID 16873479 DOI: 10.1093/Bioinformatics/Btl244 |
0.306 |
|
| 2006 |
Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S. EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research. 34: W459-62. PMID 16845049 DOI: 10.1093/Nar/Gkl066 |
0.398 |
|
| 2006 |
Yamada T, Kanehisa M, Goto S. Extraction of phylogenetic network modules from the metabolic network. Bmc Bioinformatics. 7: 130. PMID 16533389 DOI: 10.1186/1471-2105-7-130 |
0.486 |
|
| 2006 |
Okuda S, Katayama T, Kawashima S, Goto S, Kanehisa M. ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Research. 34: D358-62. PMID 16381886 DOI: 10.1093/Nar/Gkj037 |
0.414 |
|
| 2006 |
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Research. 34: D354-7. PMID 16381885 DOI: 10.1093/Nar/Gkj102 |
0.412 |
|
| 2006 |
Nacher JC, Ochiai T, Yamada T, Kanehisa M, Akutsu T. The role of log-normal dynamics in the evolution of biochemical pathways. Bio Systems. 83: 26-37. PMID 16236424 DOI: 10.1016/J.Biosystems.2005.09.003 |
0.481 |
|
| 2006 |
Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, Hamajima M, Kawasaki T, Kanehisa M. KEGG as a glycome informatics resource Glycobiology. 16: 63R-70R. PMID 16014746 DOI: 10.1093/Glycob/Cwj010 |
0.431 |
|
| 2006 |
Toh H, Sato T, Yamanishi Y, Kanehisa M. S3c2-3 Prediction of protein-protein interaction with co-evolutionary information(S3-c2: "Structural Bioinformatics: Molecular structures as the basis of understanding protein network systems",Symposia,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46: S141. DOI: 10.2142/Biophys.46.S141_2 |
0.318 |
|
| 2006 |
Kadowaki T, Wheelock CE, Hattori M, Goto S, Kanehisa M. Structure-activity relationships and pathway analysis of biological degradation processes Journal of Pesticide Science. 31: 273-281. DOI: 10.1584/Jpestics.31.273 |
0.302 |
|
| 2005 |
Aoki KF, Kanehisa M. Using the KEGG database resource. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 1.12. PMID 18428742 DOI: 10.1002/0471250953.Bi0112S11 |
0.418 |
|
| 2005 |
Tamada Y, Bannai H, Imoto S, Katayama T, Kanehisa M, Miyano S. Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models. Journal of Bioinformatics and Computational Biology. 3: 1295-313. PMID 16374908 DOI: 10.1142/S0219720005001569 |
0.347 |
|
| 2005 |
Hashimoto K, Kawano S, Goto S, Aoki-Kinoshita KF, Kawashima M, Kanehisa M. A global representation of the carbohydrate structures: a tool for the analysis of glycan. Genome Informatics. International Conference On Genome Informatics. 16: 214-22. PMID 16362924 DOI: 10.11234/Gi1990.16.214 |
0.352 |
|
| 2005 |
Yamada T, Kawashima S, Mamitsuka H, Goto S, Kanehisa M. Comprehensive analysis and prediction of synthetic lethality using subcellular locations. Genome Informatics. International Conference On Genome Informatics. 16: 150-8. PMID 16362917 DOI: 10.11234/Gi1990.16.150 |
0.501 |
|
| 2005 |
Okuda S, Kawashima S, Goto S, Kanehisa M. Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli. Genome Informatics. International Conference On Genome Informatics. 16: 116-24. PMID 16362913 DOI: 10.11234/Gi1990.16.116 |
0.336 |
|
| 2005 |
Kawano S, Hashimoto K, Miyama T, Goto S, Kanehisa M. Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinformatics (Oxford, England). 21: 3976-82. PMID 16159923 DOI: 10.1093/Bioinformatics/Bti666 |
0.346 |
|
| 2005 |
Sato T, Yamanishi Y, Kanehisa M, Toh H. The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics (Oxford, England). 21: 3482-9. PMID 15994190 DOI: 10.1093/Bioinformatics/Bti564 |
0.342 |
|
| 2005 |
Kucho KI, Okamoto K, Tsuchiya Y, Nomura S, Nango M, Kanehisa M, Ishiura M. Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803 Journal of Bacteriology. 187: 2190-2199. PMID 15743968 DOI: 10.1128/Jb.187.6.2190-2199.2005 |
0.307 |
|
| 2005 |
Aoki KF, Mamitsuka H, Akutsu T, Kanehisa M. A score matrix to reveal the hidden links in glycans Bioinformatics. 21: 1457-1463. PMID 15585530 DOI: 10.1093/Bioinformatics/Bti193 |
0.307 |
|
| 2005 |
Itoh M, Goto S, Akutsu T, Kanehisa M. Fast and accurate database homology search using upper bounds of local alignment scores Bioinformatics. 21: 912-921. PMID 15509606 DOI: 10.1093/Bioinformatics/Bti076 |
0.363 |
|
| 2005 |
Yamanishi Y, Vert JP, Kanehisa M. Supervised enzyme network inference from the integration of genomic data and chemical information Ismb 2005 Proceedings - 13th International Conference On Intelligent Systems For Molecular Biology. i468-i477. DOI: 10.1093/Bioinformatics/Bti1012 |
0.369 |
|
| 2004 |
Yamada T, Goto S, Kanehisa M. Extraction of phylogenetic network modules from prokayrote metabolic pathways. Genome Informatics. International Conference On Genome Informatics. 15: 249-58. PMID 15712127 DOI: 10.11234/Gi1990.15.249 |
0.528 |
|
| 2004 |
Itoh M, Akutsu T, Kanehisa M. Clustering of database sequences for fast homology search using upper bounds on alignment score Genome Informatics. International Conference On Genome Informatics. 15: 93-104. PMID 15712113 DOI: 10.11234/Gi1990.15.93 |
0.357 |
|
| 2004 |
Hizukuri Y, Yamanishi Y, Hashimoto K, Kanehisa M. Extraction of species-specific glycan substructures Genome Informatics. International Conference On Genome Informatics. 15: 69-81. PMID 15712111 DOI: 10.11234/Gi1990.15.69 |
0.317 |
|
| 2004 |
Nikitin F, Rance B, Itoh M, Kanehisa M, Lisacek F. Using protein motif combinations to update KEGG pathway maps and orthologue tables Genome Informatics. International Conference On Genome Informatics. 15: 266-275. PMID 15706512 DOI: 10.11234/Gi1990.15.2_266 |
0.382 |
|
| 2004 |
Nacher JC, Ueda N, Yamada T, Kanehisa M, Akutsu T. Clustering under the line graph transformation: application to reaction network. Bmc Bioinformatics. 5: 207. PMID 15617578 DOI: 10.1186/1471-2105-5-207 |
0.383 |
|
| 2004 |
Kotera M, Okuno Y, Hattori M, Goto S, Kanehisa M. Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions Journal of the American Chemical Society. 126: 16487-16498. PMID 15600352 DOI: 10.1021/Ja0466457 |
0.362 |
|
| 2004 |
Aoki KF, Yamaguchi A, Ueda N, Akutsu T, Mamitsuka H, Goto S, Kanehisa M. KCaM (KEGG Carbohydrate Matcher): A software tool for analyzing the structures of carbohydrate sugar chains Nucleic Acids Research. 32: W267-W272. PMID 15215393 DOI: 10.1093/Nar/Gkh473 |
0.34 |
|
| 2004 |
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, ... ... Kanehisa M, et al. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. Plos Biology. 2: e162. PMID 15103394 DOI: 10.1371/Journal.Pbio.0020162 |
0.38 |
|
| 2004 |
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. The KEGG resource for deciphering the genome Nucleic Acids Research. 32: D277-D280. PMID 14681412 DOI: 10.1093/Nar/Gkh063 |
0.442 |
|
| 2003 |
Aoki KF, Yamaguchi A, Okuno Y, Akutsu T, Ueda N, Kanehisa M, Mamitsuka H. Efficient tree-matching methods for accurate carbohydrate database queries Genome Informatics. International Conference On Genome Informatics. 14: 134-143. PMID 15706528 DOI: 10.11234/Gi1990.14.134 |
0.339 |
|
| 2003 |
Hattori M, Okuno Y, Goto S, Kanehisa M. Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways Journal of the American Chemical Society. 125: 11853-11865. PMID 14505407 DOI: 10.1021/Ja036030U |
0.373 |
|
| 2003 |
Park KJ, Kanehisa M. Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino pairs Bioinformatics. 19: 1656-1663. PMID 12967962 DOI: 10.1093/Bioinformatics/Btg222 |
0.341 |
|
| 2003 |
Yamanishi Y, Vert JP, Nakaya A, Kanehisa M. Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis Bioinformatics (Oxford, England). 19: i323-330. PMID 12855477 DOI: 10.1093/Bioinformatics/Btg1045 |
0.405 |
|
| 2003 |
Kanehisa M, Bork P. Bioinformatics in the post-sequence era. Nature Genetics. 33: 305-10. PMID 12610540 DOI: 10.1038/Ng1109 |
0.436 |
|
| 2003 |
Kanehisa M. The KEGG database. Novartis Foundation Symposium. 247: 91-101; discussion 1. PMID 12539951 |
0.315 |
|
| 2003 |
Brudler R, Hitomi K, Daiyasu H, Toh H, Kucho K, Ishiura M, Kanehisa M, Roberts VA, Todo T, Tainer JA, Getzoff ED. Identification of a new cryptochrome class. Structure, function, and evolution. Molecular Cell. 11: 59-67. PMID 12535521 DOI: 10.1016/S1097-2765(03)00008-X |
0.337 |
|
| 2003 |
Furumichi M, Sato Y, Katayama T, Kawashima S, Kanehisa M. Development of Community Annotation Databases for Linking Genomes to Cellular Functions Genome Informatics. 14: 657-658. DOI: 10.11234/Gi1990.14.657 |
0.339 |
|
| 2003 |
Aoki KF, Yamaguchi A, Okuno Y, Akutsu T, Ueda N, Kanehisa M, Mamitsuka H. Statistical Significance of Tree Similarity Scores Genome Informatics. 14: 579-580. DOI: 10.11234/Gi1990.14.579 |
0.303 |
|
| 2003 |
Park K, Kanehisa M, Akiyama Y. PLOC: Prediction of Subcellular Location of Proteins Genome Informatics. 14: 559-560. DOI: 10.11234/Gi1990.14.559 |
0.338 |
|
| 2003 |
Minowa Y, Katayama T, Nakaya A, Goto S, Kanehisa M. Classification of Protein Sequences into Paralog and Ortholog Clusters Using Sequence Similarity Profiles of KEGG/SSDB Genome Informatics. 14: 528-530. DOI: 10.11234/Gi1990.14.528 |
0.341 |
|
| 2003 |
Sato T, Yamanishi Y, Horimoto K, Toh H, Kanehisa M. Prediction of Protein-Protein Interactions from Phylogenetic Trees Using Partial Correlation Coefficient Genome Informatics. 14: 496-497. DOI: 10.11234/Gi1990.14.496 |
0.313 |
|
| 2003 |
Yamanishi Y, Yoshizawa AC, Itoh M, Katayama T, Kanehisa M. Extraction of Organism Groups from Whole Genome Comparisons Genome Informatics. 14: 438-439. DOI: 10.11234/Gi1990.14.438 |
0.403 |
|
| 2003 |
Yoshizawa AC, Itoh M, Okuda S, Limviphuvadh V, Sakiyama T, Kawashima S, Kanehisa M. Comprehensive Survey of Intracellular Transport System-Related Proteins in Complete Genomes and Draft Genomes Genome Informatics. 14: 436-437. DOI: 10.11234/Gi1990.14.436 |
0.333 |
|
| 2003 |
Itoh M, Yoshizawa AC, Okuda S, Goto S, Kanehisa M. Analysis of Domain Combinations in Eukaryotic Genomes Genome Informatics. 14: 434-435. DOI: 10.11234/Gi1990.14.434 |
0.303 |
|
| 2003 |
Tanaka M, Okuno Y, Yamada T, Goto S, Uemura S, Kanehisa M. Extraction of a Thermodynamic Property for Biochemical Reactions in the Metabolic Pathway Genome Informatics. 14: 370-371. DOI: 10.11234/Gi1990.14.370 |
0.307 |
|
| 2003 |
Kawano S, Okuno Y, Hashimoto K, Yamamoto H, Takematsu H, Kozutsumi Y, Goto S, Kanehisa M. Prediction of Glycan Structures from Glycosyltransferase Expression Profiles Genome Informatics. 14: 304-305. DOI: 10.11234/Gi1990.14.304 |
0.354 |
|
| 2002 |
Yamanishi Y, Itoh M, Kanehisa M. Extraction of organism groups from phylogenetic profiles using independent component analysis Genome Informatics. International Conference On Genome Informatics. 13: 61-70. PMID 14571375 DOI: 10.11234/Gi1990.13.61 |
0.33 |
|
| 2002 |
Yoshimura H, Yanagisawa S, Kanehisa M, Ohmori M. Screening for the target gene of cyanobacterial cAMP receptor protein SYCRP1 Molecular Microbiology. 43: 843-853. PMID 12085767 DOI: 10.1046/J.1365-2958.2002.02790.X |
0.308 |
|
| 2002 |
Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M. LIGAND: Database of chemical compounds and reactions in biological pathways Nucleic Acids Research. 30: 402-404. PMID 11752349 DOI: 10.1093/Nar/30.1.402 |
0.31 |
|
| 2002 |
Kawashima T, Kawashima S, Kohara Y, Kanehisa M, Makabe KW. Update of MAGEST: Maboya gene expression patterns and Sequence Tags Nucleic Acids Research. 30: 119-120. PMID 11752271 DOI: 10.1093/Nar/30.1.119 |
0.404 |
|
| 2002 |
Kanehisa M, Goto S, Kawashima S, Nakaya A. Thed KEGG databases at GenomeNet Nucleic Acids Research. 30: 42-46. PMID 11752249 DOI: 10.1093/Nar/30.1.42 |
0.445 |
|
| 2002 |
Okuda S, Kawashima S, Kanehisa M. Database of Operons in Bacillus subtilis Genome Informatics. 13: 496-497. DOI: 10.11234/Gi1990.13.496 |
0.328 |
|
| 2002 |
Fujita M, Akutsu T, Goto S, Kanehisa M. Weak Homology Detection by Profile-Profile Comparison Genome Informatics. 13: 438-439. DOI: 10.11234/Gi1990.13.438 |
0.356 |
|
| 2002 |
Yoshizawa AC, Kawashima S, Kanehisa M. Comparative Analysis of Rab GTPases and SNAREs in Eukaryotic Genomes Genome Informatics. 13: 404-405. DOI: 10.11234/Gi1990.13.404 |
0.309 |
|
| 2002 |
Furumichi M, Sato Y, Omata T, Ikeuchi M, Kanehisa M. CYORF: Community Annotation of Cyanobacteria Genes Genome Informatics. 13: 402-403. DOI: 10.11234/Gi1990.13.402 |
0.401 |
|
| 2002 |
Katayama T, Okamoto S, Narikawa R, Fujisawa T, Kawashima S, Itoh M, Ohmori M, Kanehisa M. Comprehensive Analysis of Tandem Repeat Sequences in Cyanobacteria Genome Genome Informatics. 13: 400-401. DOI: 10.11234/Gi1990.13.400 |
0.359 |
|
| 2002 |
Minowa Y, Goto S, Kanehisa M. An Analysis of Cancer Microarrays in the Pathway Context Using Bayesian Networks Genome Informatics. 13: 373-374. DOI: 10.11234/Gi1990.13.373 |
0.308 |
|
| 2002 |
Okuno Y, Hattori M, Kotera M, Igarashi Y, Goto S, Kanehisa M. Vzyme: A Template-Based Method to Predict Reactions between Two Chemical Compounds Genome Informatics. 13: 355-356. DOI: 10.11234/Gi1990.13.355 |
0.381 |
|
| 2002 |
Yamada T, Yamanishi Y, Goto S, Kanehisa M. Extraction of Modules from the Metabolic Pathways with Phylogenetic Profile Genome Informatics. 13: 353-354. DOI: 10.11234/Gi1990.13.353 |
0.326 |
|
| 2002 |
Limviphuvadh V, Goto S, Tanaka S, Ueda K, Kanehisa M. Searching for Common Protein Networks in Neurodegenerative Disorders Genome Informatics. 13: 330-331. DOI: 10.11234/Gi1990.13.330 |
0.308 |
|
| 2002 |
Nakaya A, Yoshizawa AC, Goto S, Kanehisa M. Indirect Relations in Yeast Protein Interactome Genome Informatics. 13: 328-329. DOI: 10.11234/Gi1990.13.328 |
0.309 |
|
| 2002 |
Katayama T, Kawashima S, Goto N, Nakao MC, Okuji YK, Kanehisa M. BioRuby: Object Oriented Open Source Library for Bioinformatics Genome Informatics. 13: 248-249. DOI: 10.11234/Gi1990.13.248 |
0.301 |
|
| 2002 |
Kanehisa M. The KEGG database. Novartis Foundation Symposium. 247: 91-103. DOI: 10.1002/0470857897.Ch8 |
0.427 |
|
| 2001 |
Ohmori M, Ikeuchi M, Sato N, Wolk P, Kaneko T, Ogawa T, Kanehisa M, Goto S, Kawashima S, Okamoto S, Yoshimura H, Katoh H, Fujisawa T, Ehira S, Kamei A, et al. Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120 Dna Research. 8: 271-284. PMID 11858227 DOI: 10.1093/Dnares/8.6.271 |
0.342 |
|
| 2001 |
Kanehisa M. Prediction of higher order functional networks from genomic data Pharmacogenomics. 2: 373-385. PMID 11722287 DOI: 10.1517/14622416.2.4.373 |
0.399 |
|
| 2001 |
Kuroda M, Ohta T, Uchiyama I, Baba T, Yuzawa H, Kobayashi I, Cui L, Oguchi A, Aoki K, Nagai Y, Lian J, Ito T, Kanamori M, Matsumaru H, Maruyama A, ... ... Kanehisa M, et al. Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet. 357: 1225-40. PMID 11418146 DOI: 10.1016/S0140-6736(00)04403-2 |
0.321 |
|
| 2001 |
Nakaya A, Goto S, Kanehisa M. Extraction of Correlated Gene Clusters by Multiple Graph Comparison Genome Informatics. 12: 44-53. DOI: 10.11234/Gi1990.12.44 |
0.354 |
|
| 2001 |
Itoh M, Okuji YK, Goto S, Urushihara H, Maeda M, Tanaka Y, Kanehisa M. Analysis of Dictyostelium discoideum cDNA Obtained from Multicellular and Unicellular Stages Genome Informatics. 12: 400-401. DOI: 10.11234/Gi1990.12.400 |
0.323 |
|
| 2001 |
Kawashima S, Kawashima T, Nakaya A, Makabe KW, Goto S, Kanehisa M. Analysis of the Maternal mRNAs Encoding DNA-Binding Motifs in the Ascidian Egg Using SSDB Genome Informatics. 12: 386-387. DOI: 10.11234/Gi1990.12.386 |
0.315 |
|
| 2001 |
Igarashi Y, Okuno Y, Vert J, Kanehisa M. Detecting Transcriptional cis-Regulation from Gene Expression Data Genome Informatics. 12: 241-242. DOI: 10.11234/Gi1990.12.241 |
0.312 |
|
| 2001 |
Sato Y, Nakaya A, Shiraishi K, Kawashima S, Goto S, Kanehisa M. SSDB: Sequence Similarity Database in KEGG Genome Informatics. 12: 230-231. DOI: 10.11234/Gi1990.12.230 |
0.422 |
|
| 2000 |
Fujibuchi W, Ogata H, Matsuda H, Kanehisa M. Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping Nucleic Acids Research. 28: 4029-4036. PMID 11024184 DOI: 10.1093/Nar/28.20.4029 |
0.365 |
|
| 2000 |
Ogata H, Fujibuchi W, Goto S, Kanehisa M. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucleic Acids Research. 28: 4021-8. PMID 11024183 DOI: 10.1093/Nar/28.20.4021 |
0.373 |
|
| 2000 |
Kihara D, Kanehisa M. Tandem clusters of membrane proteins in complete genome sequences. Genome Research. 10: 731-43. PMID 10854407 DOI: 10.1101/Gr.10.6.731 |
0.322 |
|
| 2000 |
Goto S, Nishioka T, Kanehisa M. LIGAND: chemical database of enzyme reactions. Nucleic Acids Research. 28: 380-2. PMID 10592281 DOI: 10.1093/Nar/28.1.380 |
0.334 |
|
| 2000 |
Kawashima T, Kawashima S, Kanehisa M, Nishida H, Makabe KW. MAGEST: MAboya gene expression patterns and sequence tags. Nucleic Acids Research. 28: 133-5. PMID 10592202 DOI: 10.1093/Nar/28.1.133 |
0.356 |
|
| 2000 |
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Research. 28: 27-30. PMID 10592173 DOI: 10.1093/Nar/28.1.27 |
0.43 |
|
| 2000 |
Itoh M, Katayama T, Okuji YK, Kanehisa M. Sequence Analysis of Redundant Usage of DNA Fragments in Complete Genomes Genome Informatics. 11: 321-322. DOI: 10.11234/Gi1990.11.321 |
0.33 |
|
| 2000 |
Igarashi Y, Kihara D, Kanehisa M. Classification and Analysis of Eukaryotic ABC Transporters in Complete Eukarya Genomes Genome Informatics. 11: 274-275. DOI: 10.11234/Gi1990.11.274 |
0.339 |
|
| 2000 |
Kawashima S, Nakaya A, Okuji Y, Goto S, Kanehisa M. Extraction of Correlated Gene Clusters from Multiple Graph Structures: Application Genome Informatics. 11: 272-273. DOI: 10.11234/Gi1990.11.272 |
0.39 |
|
| 2000 |
Nakaya A, Goto S, Kanehisa M. Extraction of Correlated Gene Clusters from Multiple Graph Structures: Theory Genome Informatics. 11: 270-271. DOI: 10.11234/Gi1990.11.270 |
0.347 |
|
| 2000 |
Katayama T, Kanehisa M. The Role of Gene Expression Regulation in Yeast Cell Cycle Pathway Genome Informatics. 11: 268-269. DOI: 10.11234/Gi1990.11.268 |
0.338 |
|
| 2000 |
Okuji YK, Hihara Y, Kamei A, Ikeuchi M, Suzuki I, Murata N, Kanehisa M. Gene Expression Analysis of Orthologs in Synechocystis sp. with Operons in Escherichia coli Genome Informatics. 11: 233-234. DOI: 10.11234/Gi1990.11.233 |
0.352 |
|
| 2000 |
Goto S, Kamiya T, Kawashima S, Miyazaki S, Okuji Y, Numata Y, Kanehisa M. KEGG/EXPRESSION: A Database for Browsing and Analysing Microarray Expression Data Genome Informatics. 11: 222-223. DOI: 10.11234/Gi1990.11.222 |
0.329 |
|
| 1999 |
Kihara D, Shimizu T, Kanehisa M. Prediction of membrane proteins based on classification of transmembrane segments. Protein Engineering. 11: 961-70. PMID 9876916 DOI: 10.1093/Protein/11.11.961 |
0.312 |
|
| 1999 |
Goto S, Nishioka T, Kanehisa M. LIGAND database for enzymes, compounds and reactions. Nucleic Acids Research. 27: 377-9. PMID 9847234 DOI: 10.1093/Nar/27.1.377 |
0.315 |
|
| 1999 |
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research. 27: 29-34. PMID 9847135 DOI: 10.1093/nar/27.1.29 |
0.329 |
|
| 1999 |
Nakao M, Bono H, Kawashima S, Kamiya T, Sato K, Goto S, Kanehisa M. Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG. Genome Informatics. 10: 94-103. DOI: 10.11234/Gi1990.10.94 |
0.4 |
|
| 1999 |
Goto S, Shiraishi K, Okamoto K, Ishida H, Nakatani T, Deno T, Kanehisa M. Ortholog Identifiers for Integration of Genomic and Pathway Information in KEGG Genome Informatics. 10: 204-205. DOI: 10.11234/Gi1990.10.204 |
0.436 |
|
| 1999 |
Bono H, Nakao M, Kanehisa M. Cluster analysis of genome-wide expression profiles to predict gene functions with KEGG Nature Genetics. 23: 33-34. DOI: 10.1038/14269 |
0.358 |
|
| 1998 |
Tomii K, Kanehisa M. A comparative analysis of ABC transporters in complete microbial genomes. Genome Research. 8: 1048-59. PMID 9799792 DOI: 10.1101/Gr.8.10.1048 |
0.343 |
|
| 1998 |
Goto S, Nishioka T, Kanehisa M. LIGAND: chemical database for enzyme reactions. Bioinformatics (Oxford, England). 14: 591-9. PMID 9730924 DOI: 10.1093/Bioinformatics/14.7.591 |
0.347 |
|
| 1998 |
Ogata H, Goto S, Fujibuchi W, Kanehisa M. Computation with the KEGG pathway database. Bio Systems. 47: 119-28. PMID 9715755 DOI: 10.1016/S0303-2647(98)00017-3 |
0.391 |
|
| 1998 |
Bono H, Ogata H, Goto S, Kanehisa M. Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Research. 8: 203-10. PMID 9521924 DOI: 10.1101/Gr.8.3.203 |
0.426 |
|
| 1998 |
Bono H, Goto S, Fujibuchi W, Ogata H, Kanehisa M. Systematic Prediction of Orthologous Units of Genes in the Complete Genomes. Genome Informatics. 9: 32-40. DOI: 10.11234/Gi1990.9.32 |
0.419 |
|
| 1998 |
Ogata H, Fujibuchi W, Kanehisa M. Detection of Co-regulated Genes by Comparative Analysis of Microbial Genomes Genome Informatics. 9: 304-305. DOI: 10.11234/Gi1990.9.304 |
0.352 |
|
| 1998 |
Nakao M, Sato K, Kamiya T, Kimura Y, Kanehisa M. Genome-Scale Gene Expression Profiles Mapped onto the Pathway and Genome Maps in KEGG Genome Informatics. 9: 230-231. DOI: 10.11234/Gi1990.9.230 |
0.342 |
|
| 1998 |
Goto S, Ishida H, Ogata H, Shiraishi K, Asanuma S, Fujibuchi W, Okamoto K, Bono H, Kanehisa M. Constructing and Annotating GENES Database in KEGG Genome Informatics. 9: 226-227. DOI: 10.11234/Gi1990.9.226 |
0.354 |
|
| 1998 |
KANEHISA M. Databases of biological information Trends in Biotechnology. 16: 24-26. DOI: 10.1016/S0167-7799(98)00133-4 |
0.346 |
|
| 1997 |
Kanehisa M. A database for post-genome analysis. Trends in Genetics : Tig. 13: 375-6. PMID 9287494 DOI: 10.1016/S0168-9525(97)01223-7 |
0.347 |
|
| 1997 |
Fujibuchi W, Kanehisa M. Prediction of gene expression specificity by promoter sequence patterns. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 4: 81-90. PMID 9205836 DOI: 10.1093/Dnares/4.2.81 |
0.366 |
|
| 1997 |
Ogiwara A, Uchiyama I, Takagi T, Kanehisa M. Construction and analysis of a profile library characterizing groups of structurally known proteins. Protein Science : a Publication of the Protein Society. 5: 1991-9. PMID 8897599 DOI: 10.1002/Pro.5560051005 |
0.377 |
|
| 1997 |
Suzuki K, Kanehisa M. Database and Prediction of Sequence Motifs on Protein Molecular Interactions Genome Informatics. 8: 344-345. DOI: 10.11234/Gi1990.8.344 |
0.356 |
|
| 1997 |
Sato K, Katsurada T, Kimura Y, Kanehisa M. Integrated GENES Database in KEGG Genome Informatics. 8: 334-335. DOI: 10.11234/Gi1990.8.334 |
0.32 |
|
| 1997 |
Kihara D, Kanehisa M. Detection of Membrane Proteins in the Whole Genome Sequences Genome Informatics. 8: 300-301. DOI: 10.11234/Gi1990.8.300 |
0.337 |
|
| 1997 |
Kawashima S, Katayama T, Kanehisa M. Construction of Molecular Interaction Database and Searching for Similar Pathways Genome Informatics. 8: 298-299. DOI: 10.11234/Gi1990.8.298 |
0.312 |
|
| 1997 |
Bono H, Goto S, Ogata H, Kanehisa M. Genome Scale Prediction of Two-Component Signal Transducers from the Knowledgeof Regulatory Interactions Genome Informatics. 8: 260-261. DOI: 10.11234/Gi1990.8.260 |
0.318 |
|
| 1996 |
Sato K, Katsurada T, Kamiya T, Egoshi M, Kanehisa M. Java Applets for Handling Genome Maps in KEGG Genome Informatics. 7: 254-255. DOI: 10.11234/Gi1990.7.254 |
0.302 |
|
| 1996 |
Bono H, Ogata H, Goto S, Kanehisa M. Genome Scale Prediction of Enzyme Genes Utilizing the Knowledge of Metabolic Interactions Genome Informatics. 7: 252-253. DOI: 10.11234/Gi1990.7.252 |
0.369 |
|
| 1996 |
Tomii K, Kanehisa M. A Statistical Analysis of Gene Arrangement Patterns in Bacterial and Yeast Genomes Genome Informatics. 7: 246-247. DOI: 10.11234/Gi1990.7.246 |
0.356 |
|
| 1996 |
Kihara D, Shimizu T, Kanehisa M. A Prediction Method for Transmembrane Segments in Proteins Utilizing Multiple Discrimination Functions Genome Informatics. 7: 244-245. DOI: 10.11234/Gi1990.7.244 |
0.31 |
|
| 1995 |
Suzuki K, Akiyama Y, Kanehisa M. Multiple sequence alignment by combining incomplete blocks of similar segments Genome Informatics. 6: 120-121. DOI: 10.11234/Gi1990.6.120 |
0.33 |
|
| 1995 |
Uchiyama I, Ogiwara A, Takagi T, Kanehisa M. Protein Sequence Grouping by Peptide Word Motifs Genome Informatics. 6: 116-117. DOI: 10.11234/Gi1990.6.116 |
0.334 |
|
| 1995 |
Fujibuchi W, Kanehisa M. Prediction of Promoter Expression Specificity by Conserved Sequence Patterns Genome Informatics. 6: 106-107. DOI: 10.11234/Gi1990.6.106 |
0.313 |
|
| 1994 |
Mizuno M, Kanehisa M. Distribution profiles of GC content around the translation initiation site in different species. Febs Letters. 352: 7-10. PMID 7925946 DOI: 10.1016/0014-5793(94)00898-1 |
0.309 |
|
| 1994 |
Suzuki K, Goto S, Akiyama Y, Kanehisa M. A Signal Transduction Database Genome Informatics. 5: 144-145. DOI: 10.11234/Gi1990.5.144 |
0.351 |
|
| 1993 |
Matsuo Y, Kanehisa M. An approach to systematic detection of protein structural motifs. Bioinformatics. 9: 153-159. PMID 8481817 DOI: 10.1093/Bioinformatics/9.2.153 |
0.318 |
|
| 1993 |
Nakai K, Kanehisa M. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics. 14: 897-911. PMID 1478671 DOI: 10.1016/S0888-7543(05)80111-9 |
0.357 |
|
| 1993 |
Ogiwara A, Uchiyama I, Kanehisa M. Sequence Motif Analysis and Retrieval Tool Genome Informatics. 4: 402-410. DOI: 10.11234/Gi1990.4.402 |
0.337 |
|
| 1993 |
Suzuki T, Nakashima S, Takagi T, Kuhara S, Kanehisa M. Enhancement of the Integrated Database "HyperGenome" for Genome Maps and Sequence Information Genome Informatics. 4: 362-369. DOI: 10.11234/Gi1990.4.362 |
0.352 |
|
| 1993 |
Uchiyama I, Ogiwara A, Ohkubo Z, Kanehisa M. Automatic Procedure to Extract Signature Pentapeptides from the Protein Sequence Database Genome Informatics. 4: 255-263. DOI: 10.11234/Gi1990.4.255 |
0.318 |
|
| 1992 |
Ogiwara A, Uchiyama I, Seto Y, Kanehisa M. Construction of a dictionary of sequence motifs that characterize groups of related proteins. Protein Engineering. 5: 479-88. PMID 1438158 DOI: 10.1093/Protein/5.6.479 |
0.385 |
|
| 1991 |
Seto Y, Ikeuchi Y, Kanehisa M. Fragment peptide library for classification and functional prediction of proteins. Proteins. 8: 341-51. PMID 2091024 DOI: 10.1002/Prot.340080408 |
0.301 |
|
| 1991 |
Nakai K, Kanehisa M. Expert system for predicting protein localization sites in gram-negative bacteria. Proteins. 11: 95-110. PMID 1946347 DOI: 10.1002/Prot.340110203 |
0.312 |
|
| 1991 |
Ogiwara A, Uchiyama I, Kanehisa M. Automatic construction of a dictionary of sequence motifs that characterize groups of similar proteins Genome Informatics. 2: 58-61. DOI: 10.11234/Gi1990.2.58 |
0.34 |
|
| 1989 |
Nakai K, Kidera A, Kanehisa M. Cluster analysis of amino acid indices for prediction of protein structure and function. Protein Engineering. 2: 93-100. PMID 3244698 DOI: 10.1093/Protein/2.2.93 |
0.312 |
|
| 1989 |
Kanehisa M. A multivariate analysis method for discriminating protein secondary structural segments. Protein Engineering. 2: 87-92. PMID 3244697 DOI: 10.1093/Protein/2.2.87 |
0.322 |
|
| 1989 |
Nakai K, Kanehisa M. Prediction of in-vivo modification sites of proteins from their primary structures. Journal of Biochemistry. 104: 693-9. PMID 3235445 DOI: 10.1093/Oxfordjournals.Jbchem.A122535 |
0.306 |
|
| 1988 |
Nakata K, Kanehisa M, Maizel JV. Discriminant analysis of promoter regions in Escherichia coli sequences. Bioinformatics. 4: 367-371. PMID 3046714 DOI: 10.1093/Bioinformatics/4.3.367 |
0.333 |
|
| 1986 |
Takagi JS, Tokushige M, Shimura Y, Kanehisa M. L-aspartate ammonia-lyase and fumarate hydratase share extensive sequence homology. Biochemical and Biophysical Research Communications. 138: 568-72. PMID 3091019 DOI: 10.1016/S0006-291X(86)80534-4 |
0.333 |
|
| 1986 |
Greif PC, Nussinov R, Kanehisa M, Delisi C. Nonrandom recurrence of consecutive repeats in noncoding mammalian sequences Mathematical Biosciences. 81: 43-52. DOI: 10.1016/0025-5564(86)90162-8 |
0.573 |
|
| 1985 |
Nakata K, Kanehisa M, DeLisi C. Prediction of splice junctions in mRNA sequences. Nucleic Acids Research. 13: 5327-40. PMID 4022782 DOI: 10.1093/Nar/13.14.5327 |
0.538 |
|
| 1985 |
Klein P, Kanehisa M, DeLisi C. The detection and classification of membrane-spanning proteins. Biochimica Et Biophysica Acta. 815: 468-76. PMID 3838905 DOI: 10.1016/0005-2736(85)90375-X |
0.523 |
|
| 1985 |
Burks C, Fickett JW, Goad WB, Kanehisa M, Lewitter FI, Rindone WP, Swindell CD, Tung CS, Bilofsky HS. Cabios review: The genbank nucleic acid sequence database Bioinformatics. 1: 225-233. DOI: 10.1093/Bioinformatics/1.4.225 |
0.35 |
|
| 1985 |
Kanehisa M, DeLisi C. The prediction of a protein and nucleic acid structure: Problems and prospects Acta Applicandae Mathematicae. 4: 115-137. DOI: 10.1007/978-94-009-5426-7_1 |
0.556 |
|
| 1984 |
Kanehisa M, Fickett JW, Goad WB. A relational database system for the maintenance and verification of the Los Alamos sequence library. Nucleic Acids Research. 12: 149-58. PMID 6694899 DOI: 10.1093/Nar/12.1Part1.149 |
0.34 |
|
| 1984 |
Klein P, Kanehisa M, DeLisi C. Prediction of protein function from sequence properties. Discriminant analysis of a data base. Biochimica Et Biophysica Acta. 787: 221-6. PMID 6547351 DOI: 10.1016/0167-4838(84)90312-1 |
0.568 |
|
| 1984 |
Kanehisa M, Klein P, Greif P, DeLisi C. Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Research. 12: 417-28. PMID 6546426 DOI: 10.1093/Nar/12.1Part1.417 |
0.585 |
|
| 1984 |
DeLisi C, Kanehisa M. Assessing the significance of local sequence homologies Mathematical Biosciences. 69: 77-85. DOI: 10.1016/0025-5564(84)90015-4 |
0.559 |
|
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