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Matthias Wolf - Publications

Affiliations: 
Biozentrum University of Würzburg, Würzburg, Bayern, Germany 
Website:
http://www.biozentrum.uni-wuerzburg.de/matthias_wolf.html
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77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lima MB, Borges A, Wolf M, Santos HA, Dias RJP, Rossi MF. First record of Trypanosoma (Ornithotrypanum) infecting Neotropical birds. Parasitology Research. 123: 156. PMID 38457016 DOI: 10.1007/s00436-024-08179-0  0.39
2023 Weimer M, Vďačný P, Wolf M. : RNA sequence-structure phylogenetics. International Journal of Systematic and Evolutionary Microbiology. 73. PMID 37022772 DOI: 10.1099/ijsem.0.005744  0.552
2022 Rackevei AS, Karnkowska A, Wolf M. 18S rDNA sequence-structure phylogeny of the Euglenophyceae (Euglenozoa, Euglenida). The Journal of Eukaryotic Microbiology. e12959. PMID 36478494 DOI: 10.1111/jeu.12959  0.536
2022 Rackevei AS, Borges A, Engstler M, Dandekar T, Wolf M. About the Analysis of 18S rDNA Sequence Data from Trypanosomes in Barcoding and Phylogenetics: Tracing a Continuation Error Occurring in the Literature. Biology. 11. PMID 36358313 DOI: 10.3390/biology11111612  0.453
2021 Borges AR, Engstler M, Wolf M. 18S rRNA gene sequence-structure phylogeny of the Trypanosomatida (Kinetoplastea, Euglenozoa) with special reference to Trypanosoma. European Journal of Protistology. 81: 125824. PMID 34352687 DOI: 10.1016/j.ejop.2021.125824  0.502
2020 Cai R, Kayal E, Alves-de-Souza C, Bigeard E, Corre E, Jeanthon C, Marie D, Porcel BM, Siano R, Szymczak J, Wolf M, Guillou L. Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach. Scientific Reports. 10: 2531. PMID 32054950 DOI: 10.1038/s41598-020-59524-z  0.33
2018 Wolf M, Buchheim MA. The internal transcribed spacer 2 of Jenufa (Chlorophyta, Chlorophyceae) is extraordinarily long: A hypothesis. Gene. PMID 30092340 DOI: 10.1016/j.gene.2018.08.019  0.49
2018 Wolf M, Buchheim MA. The internal transcribed spacer 2 of Jenufa (Chlorophyta, Chlorophyceae) is extraordinarily long: A hypothesis. Gene. PMID 30092340 DOI: 10.1016/J.Gene.2018.08.019  0.772
2018 Wenzel A, Altmueller J, Ekici AB, Popp B, Stueber K, Thiele H, Pannes A, Staubach S, Salido E, Nuernberg P, Reinhardt R, Reis A, Rump P, Hanisch FG, Wolf MTF, et al. Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports. 8: 4170. PMID 29520014 DOI: 10.1038/s41598-018-22428-0  0.321
2018 Lim HC, Tan SN, Teng ST, Lundholm N, Orive E, David H, Quijano-Scheggia S, Leong SCY, Wolf M, Bates SS, Lim PT, Leaw CP. Phylogeny and species delineation in the marine diatom Pseudo-nitzchia (Bacillariophyta) using cox1, LSU and ITS2 rRNA genes: A perspective in character evolution. Journal of Phycology. PMID 29377161 DOI: 10.1111/Jpy.12620  0.507
2018 Kryvenda A, Rybalka N, Wolf M, Friedl T. Species distinctions among closely related strains of Eustigmatophyceae (Stramenopiles) emphasizing ITS2 sequence-structure data: Eustigmatos and Vischeria European Journal of Phycology. 53: 471-491. DOI: 10.1080/09670262.2018.1475015  0.504
2017 Dai X, Mak YL, Lu CK, Mei HH, Wu JJ, Lee WH, Chan LL, Lim PT, Mustapa NI, Lim HC, Wolf M, Li D, Luo Z, Gu H, Leaw CP, et al. Taxonomic assignment of the benthic toxigenic dinoflagellate Gambierdiscus sp. type 6 as Gambierdiscus balechii (Dinophyceae), including its distribution and ciguatoxicity. Harmful Algae. 67: 107-118. PMID 28755713 DOI: 10.1016/J.Hal.2017.07.002  0.428
2017 Marin Rodrigues MV, Müller T, Buchheim MA, Canbäck B, Wolf M. THESES db: the algae 18S rDNA sequence–structure database for inferring phylogenies Phycologia. 56: 186-192. DOI: 10.2216/16-71.1  0.794
2017 Buchheim MA, Müller T, Wolf M. 18S rDNA sequence-structure phylogeny of the Chlorophyceae with special emphasis on the Sphaeropleales Plant Gene. 10: 45-50. DOI: 10.1016/J.Plgene.2017.05.005  0.787
2016 Leaw CP, Tan TH, Lim HC, Teng ST, Yong HL, Smith KF, Rhodes L, Wolf M, Holland WC, Vandersea MW, Litaker RW, Tester PA, Gu H, Usup G, Lim PT. New scenario for speciation in the benthic dinoflagellate genus Coolia (Dinophyceae). Harmful Algae. 55: 137-149. PMID 28073527 DOI: 10.1016/J.Hal.2016.02.010  0.333
2016 Lim HC, Teng ST, Lim PT, Wolf M, Leaw CP. 18S rDNA phylogeny of Pseudo-nitzschia (Bacillariophyceae) inferred from sequence-structure information Phycologia. 55: 134-146. DOI: 10.2216/15-78.1  0.52
2015 Teng ST, Lim PT, Lim HC, Rivera-Vilarelle M, Quijano-Scheggia S, Takata Y, Quilliam MA, Wolf M, Bates SS, Leaw CP. A non-toxigenic but morphologically and phylogenetically distinct new species of Pseudo-nitzschia, P. sabit sp. nov. (Bacillariophyceae). Journal of Phycology. 51: 706-25. PMID 26986792 DOI: 10.1111/Jpy.12313  0.421
2015 Ankenbrand MJ, Keller A, Wolf M, Schultz J, Förster F. ITS2 Database V: Twice as Much. Molecular Biology and Evolution. PMID 26248563 DOI: 10.1093/Molbev/Msv174  0.475
2015 Wolf M. ITS so much more. Trends in Genetics : Tig. 31: 175-6. PMID 25765919 DOI: 10.1016/J.Tig.2015.02.005  0.519
2015 Pegg C, Wolf M, Alanagreh L, Portman R, Buchheim MA. Morphological diversity masks phylogenetic similarity of Ettlia and Haematococcus (Chlorophyceae) Phycologia. 54: 385-397. DOI: 10.2216/15-015.1  0.729
2015 Heeg JS, Wolf M. ITS2 and 18S rDNA sequence-structure phylogeny of Chlorella and allies (Chlorophyta, Trebouxiophyceae, Chlorellaceae) Plant Gene. 4: 20-28. DOI: 10.1016/J.Plgene.2015.08.001  0.604
2014 Young ND, Dyková I, Crosbie PB, Wolf M, Morrison RN, Bridle AR, Nowak BF. Support for the coevolution of Neoparamoeba and their endosymbionts, Perkinsela amoebae-like organisms. European Journal of Protistology. 50: 509-23. PMID 25243758 DOI: 10.1016/J.Ejop.2014.07.004  0.413
2014 Wolf M, Koetschan C, Müller T. ITS2, 18S, 16S or any other RNA - simply aligning sequences and their individual secondary structures simultaneously by an automatic approach. Gene. 546: 145-9. PMID 24881812 DOI: 10.1016/J.Gene.2014.05.065  0.564
2014 Koetschan C, Kittelmann S, Lu J, Al-Halbouni D, Jarvis GN, Müller T, Wolf M, Janssen PH. Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota). Plos One. 9: e91928. PMID 24663345 DOI: 10.1371/Journal.Pone.0091928  0.596
2013 Wolf M, Chen S, Song J, Ankenbrand M, Müller T. Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences--a proof of concept. Plos One. 8: e66726. PMID 23826120 DOI: 10.1371/Journal.Pone.0066726  0.462
2013 Rybalka N, Wolf M, Andersen RA, Friedl T. Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae). Bmc Evolutionary Biology. 13: 39. PMID 23402662 DOI: 10.1186/1471-2148-13-39  0.526
2013 Assunção P, Jaén-Molina R, Caujapé-Castells J, Wolf M, Buchheim MA, de la Jara A, Freijanes K, Carmona L, Mendoza H. Phylogenetic analysis of ITS2 sequences suggests the taxonomic re-structuring of Dunaliella viridis (Chlorophyceae, Dunaliellales) Phycological Research. 61: 81-88. DOI: 10.1111/Pre.12003  0.7
2013 Buchheim MA, Sutherland DM, Buchheim JA, Wolf M. The blood alga: phylogeny of Haematococcus (Chlorophyceae) inferred from ribosomal RNA gene sequence data European Journal of Phycology. 48: 318-329. DOI: 10.1080/09670262.2013.830344  0.753
2012 Markert SM, Müller T, Koetschan C, Friedl T, Wolf M. 'Y'Scenedesmus (Chlorophyta, Chlorophyceae): The internal transcribed spacer 2 rRNA secondary structure re-revisited Plant Biology. 14: 987-996. PMID 22639929 DOI: 10.1111/J.1438-8677.2012.00576.X  0.559
2012 Merget B, Koetschan C, Hackl T, Förster F, Dandekar T, Müller T, Schultz J, Wolf M. The ITS2 Database. Journal of Visualized Experiments : Jove. PMID 22433429 DOI: 10.3791/3806  0.712
2012 Koetschan C, Hackl T, Müller T, Wolf M, Förster F, Schultz J. ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies. Molecular Phylogenetics and Evolution. 63: 585-8. PMID 22366368 DOI: 10.1016/J.Ympev.2012.01.026  0.525
2012 Buchheim MA, Sutherland DM, Schleicher T, Förster F, Wolf M. Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2. Annals of Botany. 109: 109-16. PMID 22028463 DOI: 10.1093/Aob/Mcr275  0.778
2011 Krienitz L, Bock C, Nozaki H, Wolf M. SSU rRNA GENE PHYLOGENY OF MORPHOSPECIES AFFILIATED TO THE BIOASSAY ALGA "SELENASTRUM CAPRICORNUTUM" RECOVERED THE POLYPHYLETIC ORIGIN OF CRESCENT-SHAPED CHLOROPHYTA(1). Journal of Phycology. 47: 880-93. PMID 27020023 DOI: 10.1111/J.1529-8817.2011.01010.X  0.449
2011 Buchheim MA, Keller A, Koetschan C, Förster F, Merget B, Wolf M. Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life. Plos One. 6: e16931. PMID 21347329 DOI: 10.1371/Journal.Pone.0016931  0.78
2010 Schwarz RF, Fletcher W, Förster F, Merget B, Wolf M, Schultz J, Markowetz F. Evolutionary distances in the twilight zone--a rational kernel approach. Plos One. 5: e15788. PMID 21209825 DOI: 10.1371/Journal.Pone.0015788  0.53
2010 Merget B, Wolf M. A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data. Bmc Research Notes. 3: 320. PMID 21108782 DOI: 10.1186/1756-0500-3-320  0.588
2010 Keller A, Förster F, Müller T, Dandekar T, Schultz J, Wolf M. Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biology Direct. 5: 4. PMID 20078867 DOI: 10.1186/1745-6150-5-4  0.687
2010 Sorhannus U, Ortiz JD, Wolf M, Fox MG. Microevolution and speciation in Thalassiosira weissflogii (Bacillariophyta). Protist. 161: 237-49. PMID 20018562 DOI: 10.1016/J.Protis.2009.10.003  0.438
2010 Koetschan C, Förster F, Keller A, Schleicher T, Ruderisch B, Schwarz R, Müller T, Wolf M, Schultz J. The ITS2 Database III--sequences and structures for phylogeny. Nucleic Acids Research. 38: D275-9. PMID 19920122 DOI: 10.1093/Nar/Gkp966  0.594
2010 Ruhl MW, Wolf M, Jenkins TM. Compensatory base changes illuminate morphologically difficult taxonomy. Molecular Phylogenetics and Evolution. 54: 664-9. PMID 19660561 DOI: 10.1016/J.Ympev.2009.07.036  0.457
2010 Keller A, Wolf M, Dandekar T. Ribosomal RNA phylogenetics: The third dimension Biologia. 65: 388-391. DOI: 10.2478/S11756-010-0045-3  0.678
2010 Hegewald E, Wolf M, Keller A, Friedl T, Krienitz L. ITS2 sequence-structure phylogeny in the Scenedesmaceae with special reference to Coelastrum (Chlorophyta, Chlorophyceae), including the new genera Comasiella and Pectinodesmus Phycologia. 49: 325-335. DOI: 10.2216/09-61.1  0.485
2010 Schill RO, Förster F, Dandekar T, Wolf M. Using compensatory base change analysis of internal transcribed spacer 2 secondary structures to identify three new species in Paramacrobiotus (Tardigrada) Organisms Diversity and Evolution. 10: 287-296. DOI: 10.1007/S13127-010-0025-Z  0.681
2009 Engelmann JC, Rahmann S, Wolf M, Schultz J, Fritzilas E, Kneitz S, Dandekar T, Müller T. Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species. Molecular Ecology Resources. 9: 83-93. PMID 21564570 DOI: 10.1111/J.1755-0998.2008.02199.X  0.582
2009 Wiemers M, Keller A, Wolf M. ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ). Bmc Evolutionary Biology. 9: 300. PMID 20035628 DOI: 10.1186/1471-2148-9-300  0.498
2009 Ahvenniemi P, Wolf M, Lehtonen MJ, Wilson P, German-Kinnari M, Valkonen JP. Evolutionary diversification indicated by compensatory base changes in ITS2 secondary structures in a complex fungal species, Rhizoctonia solani. Journal of Molecular Evolution. 69: 150-63. PMID 19609478 DOI: 10.1007/S00239-009-9260-3  0.401
2009 Schultz J, Wolf M. ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics. Molecular Phylogenetics and Evolution. 52: 520-3. PMID 19489124 DOI: 10.1016/J.Ympev.2009.01.008  0.599
2009 Keller A, Schleicher T, Schultz J, Müller T, Dandekar T, Wolf M. 5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene. 430: 50-7. PMID 19026726 DOI: 10.1016/J.Gene.2008.10.012  0.694
2009 Guidetti R, Schill RO, Bertolani R, Dandekar T, Wolf M. New molecular data for tardigrade phylogeny, with the erection of Paramacrobiotus gen. nov Journal of Zoological Systematics and Evolutionary Research. 47: 315-321. DOI: 10.1111/J.1439-0469.2009.00526.X  0.619
2008 Seibel PN, Müller T, Dandekar T, Wolf M. Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. Bmc Research Notes. 1: 91. PMID 18854023 DOI: 10.1186/1756-0500-1-91  0.635
2008 Wolf M, Ruderisch B, Dandekar T, Schultz J, Müller T. ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments. Bioinformatics (Oxford, England). 24: 2401-2. PMID 18723521 DOI: 10.1093/Bioinformatics/Btn453  0.682
2008 Keller A, Schleicher T, Förster F, Ruderisch B, Dandekar T, Müller T, Wolf M. ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales). Bmc Evolutionary Biology. 8: 218. PMID 18655698 DOI: 10.1186/1471-2148-8-218  0.679
2008 Selig C, Wolf M, Müller T, Dandekar T, Schultz J. The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Research. 36: D377-80. PMID 17933769 DOI: 10.1093/Nar/Gkm827  0.677
2007 Gerlach D, Wolf M, Dandekar T, Müller T, Pokorny A, Rahmann S. Deep metazoan phylogeny. In Silico Biology. 7: 151-4. PMID 17688440  0.5
2007 Müller T, Philippi N, Dandekar T, Schultz J, Wolf M. Distinguishing species. Rna (New York, N.Y.). 13: 1469-72. PMID 17652131 DOI: 10.1261/rna.617107  0.556
2007 Wolf M, Selig C, Müller T, Philippi N, Dandekar T, Schultz J. Placozoa: At least two Biologia - Section Botany. 62: 641-645. DOI: 10.2478/S11756-007-0143-Z  0.71
2006 Seibel PN, Müller T, Dandekar T, Schultz J, Wolf M. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing. Bmc Bioinformatics. 7: 498. PMID 17101042 DOI: 10.1186/1471-2105-7-498  0.676
2006 Wolf M, Seibel PN, Dandekar T, Lynn DH. A java applet for exploring the new higher level classification of eukaryotes with emphasis on the taxonomy of protists. The Journal of Eukaryotic Microbiology. 53: 315. PMID 16968448 DOI: 10.1111/J.1550-7408.2006.00123.X  0.505
2006 Schultz J, Müller T, Achtziger M, Seibel PN, Dandekar T, Wolf M. The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses. Nucleic Acids Research. 34: W704-7. PMID 16845103 DOI: 10.1093/Nar/Gkl129  0.696
2006 Rahmann S, Müller T, Dandekar T, Wolf M. Efficient and robust analysis of large phylogenetic datasets Advanced Data Mining Technologies in Bioinformatics. 104-117. DOI: 10.4018/978-1-59140-863-5.ch006  0.478
2005 Wolf M, Achtziger M, Schultz J, Dandekar T, Müller T. Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures. Rna (New York, N.Y.). 11: 1616-23. PMID 16244129 DOI: 10.1261/Rna.2144205  0.681
2005 Wolf M, Friedrich J, Dandekar T, Müller T. CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In Silico Biology. 5: 291-4. PMID 15996120  0.584
2005 Schmitt S, Hentschel U, Zea S, Dandekar T, Wolf M. ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae). Journal of Molecular Evolution. 60: 327-36. PMID 15871043 DOI: 10.1007/S00239-004-0162-0  0.679
2005 Schultz J, Maisel S, Gerlach D, Müller T, Wolf M. A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. Rna (New York, N.Y.). 11: 361-4. PMID 15769870 DOI: 10.1261/Rna.7204505  0.609
2005 Friedrich J, Dandekar T, Wolf M, Müller T. ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. Bioinformatics (Oxford, England). 21: 2108-9. PMID 15677706 DOI: 10.1093/Bioinformatics/Bti289  0.576
2005 Buchheim M, Buchheim J, Carlson T, Braband A, Hepperle D, Krienitz L, Wolf M, Hegewald E. Phylogeny of the hydrodictyaceae (Chlorophyceae): Inferences from rDNA data Journal of Phycology. 41: 1039-1054. DOI: 10.1111/J.1529-8817.2005.00129.X  0.742
2004 Müller T, Rahmann S, Dandekar T, Wolf M. Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta). Bmc Evolutionary Biology. 4: 20. PMID 15222898 DOI: 10.1186/1471-2148-4-20  0.555
2004 Wolf M, Müller T, Dandekar T, Pollack JD. Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data. International Journal of Systematic and Evolutionary Microbiology. 54: 871-5. PMID 15143038 DOI: 10.1099/Ijs.0.02868-0  0.641
2004 Krienitz L, Hegewald EH, Hepperle D, Huss VAR, Rohr T, Wolf M. Phylogenetic relationship of Chlorella and Parachlorella gen. nov. (Chlorophyta, Trebouxiophyceae) Phycologia. 43: 529-542. DOI: 10.2216/I0031-8884-43-5-529.1  0.467
2004 Wolf M. The secondary structure of the its2 transcript in cyclotella and stephanodiscus (Thalassiosiraceae, Bacillariophyta) Diatom Research. 19: 135-142. DOI: 10.1080/0269249X.2004.9705613  0.528
2003 Hegewald E, Wolf M. Phylogenetic relationships of Scenedesmus and Acutodesmus (Chlorophyta, Chlorophyceae) as inferred from 18S rDNA and ITS-2 sequence comparisons Plant Systematics and Evolution. 241: 185-191. DOI: 10.1007/S00606-003-0061-7  0.436
2003 Wolf M, Hepperle D, Krienitz L. On the phylogeny of Radiococcus, Planktosphaeria and Schizochlamydella (Radiococcaceae, Chlorophyta) Biologia - Section Botany. 58: 759-765.  0.351
2003 Wolf M, Hegewald E, Hepperle D, Krienitz L. Phylogenetic position of the Golenkiniaceae (Chlorophyta) as inferred from 18S rDNA sequence data Biologia - Section Botany. 58: 433-436.  0.428
2003 Krienitz L, Hegewald E, Hepperle D, Wolf M. The systematics of coccoid green algae: 18S rRNA gene sequence data versus morphology Biologia - Section Botany. 58: 437-446.  0.404
2002 Wolf M, Scheffler W, Nicklisch A. Stephanodiscus neoastraea and Stephanodiscus heterostylus (Bacillariophyta) are one and the same species Diatom Research. 17: 445-451. DOI: 10.1080/0269249X.2002.9705561  0.406
2002 Wolf M, Buchheim M, Hegewald E, Krienitz L, Hepperle D. Phylogenetic position of the Sphaeropleaceae (Chlorophyta) Plant Systematics and Evolution. 230: 161-171. DOI: 10.1007/S006060200002  0.699
2001 Gottschling M, Hilger HH, Wolf M, Diane N. Secondary structure of the ITS1 transcript and its application in a reconstruction of the phylogeny of Boraginales Plant Biology. 3: 629-636. DOI: 10.1055/S-2001-19371  0.498
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