Daniel Rico - Publications

Affiliations: 
Centro Nacional de Biotecnología, Madrid, Comunidad de Madrid, Spain 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Rigau M, Juan D, Valencia A, Rico D. Intronic CNVs and gene expression variation in human populations. Plos Genetics. 15: e1007902. PMID 30677042 DOI: 10.1371/journal.pgen.1007902  0.44
2018 Grassi L, Pourfarzad F, Ullrich S, Merkel A, Were F, Carrillo-de-Santa-Pau E, Yi G, Hiemstra IH, Tool ATJ, Mul E, Perner J, Janssen-Megens E, Berentsen K, Kerstens H, Habibi E, ... ... Rico D, et al. Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils. Cell Reports. 24: 2784-2794. PMID 30184510 DOI: 10.1016/j.celrep.2018.08.018  0.44
2017 Carrillo-de-Santa-Pau E, Juan D, Pancaldi V, Were F, Martin-Subero I, Rico D, Valencia A. Automatic identification of informative regions with epigenomic changes associated to hematopoiesis. Nucleic Acids Research. 45: 9244-9259. PMID 28934481 DOI: 10.1093/nar/gkx618  0.44
2017 Ecker S, Chen L, Pancaldi V, Bagger FO, Fernández JM, Carrillo de Santa Pau E, Juan D, Mann AL, Watt S, Casale FP, Sidiropoulos N, Rapin N, Merkel A, Stunnenberg HG, ... ... Rico D, et al. Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types. Genome Biology. 18: 18. PMID 28126036 DOI: 10.1186/s13059-017-1156-8  0.44
2016 Fernández JM, de la Torre V, Richardson D, Royo R, Puiggròs M, Moncunill V, Fragkogianni S, Clarke L, Flicek P, Rico D, Torrents D, Carrillo de Santa Pau E, Valencia A. The BLUEPRINT Data Analysis Portal. Cell Systems. PMID 27863955 DOI: 10.1016/j.cels.2016.10.021  0.44
2016 Astle WJ, Elding H, Jiang T, Allen D, Ruklisa D, Mann AL, Mead D, Bouman H, Riveros-Mckay F, Kostadima MA, Lambourne JJ, Sivapalaratnam S, Downes K, Kundu K, Bomba L, ... ... Rico D, et al. The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease. Cell. 167: 1415-1429.e19. PMID 27863252 DOI: 10.1016/j.cell.2016.10.042  0.44
2016 Chen L, Ge B, Casale FP, Vasquez L, Kwan T, Garrido-Martín D, Watt S, Yan Y, Kundu K, Ecker S, Datta A, Richardson D, Burden F, Mead D, Mann AL, ... ... Rico D, et al. Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells. Cell. 167: 1398-1414.e24. PMID 27863251 DOI: 10.1016/j.cell.2016.10.026  0.44
2016 Earl J, Rico D, Carrillo-de-Santa-Pau E, Rodríguez-Santiago B, Méndez-Pertuz M, Auer H, Gómez G, Grossman HB, Pisano DG, Schulz WA, Pérez-Jurado LA, Carrato A, Theodorescu D, Chanock S, Valencia A, et al. Erratum to: The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies. Bmc Genomics. 17: 829. PMID 27782819 DOI: 10.1186/s12864-016-3179-z  0.44
2016 Pancaldi V, Carrillo-de-Santa-Pau E, Javierre BM, Juan D, Fraser P, Spivakov M, Valencia A, Rico D. Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity. Genome Biology. 17: 152. PMID 27391817 DOI: 10.1186/s13059-016-1003-3  0.44
2016 Feichtinger J, Hernández I, Fischer C, Hanscho M, Auer N, Hackl M, Jadhav V, Baumann M, Krempl PM, Schmidl C, Farlik M, Schuster M, Merkel A, Sommer A, Heath S, ... Rico D, et al. Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time. Biotechnology and Bioengineering. PMID 27072894 DOI: 10.1002/bit.25990  0.44
2016 Juan D, Perner J, Carrillo de Santa Pau E, Marsili S, Ochoa D, Chung HR, Vingron M, Rico D, Valencia A. Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs. Cell Reports. PMID 26832418 DOI: 10.1016/j.celrep.2016.01.008  0.44
2015 Earl J, Rico D, Carrillo-de-Santa-Pau E, Rodríguez-Santiago B, Méndez-Pertuz M, Auer H, Gómez G, Grossman HB, Pisano DG, Schulz WA, Pérez-Jurado LA, Carrato A, Theodorescu D, Chanock S, Valencia A, et al. Erratum to: The UBC-40 Urothelial Bladder Cancer Cell Line Index: a genomic resource for functional studies. Bmc Genomics. 16: 1019. PMID 26621286 DOI: 10.1186/s12864-015-2227-4  0.44
2015 Kretzmer H, Bernhart SH, Wang W, Haake A, Weniger MA, Bergmann AK, Betts MJ, Carrillo-de-Santa-Pau E, Doose G, Gutwein J, Richter J, Hovestadt V, Huang B, Rico D, Jühling F, et al. DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control. Nature Genetics. PMID 26437030 DOI: 10.1038/ng.3413  0.32
2015 Kulis M, Merkel A, Heath S, Queirós AC, Schuyler RP, Castellano G, Beekman R, Raineri E, Esteve A, Clot G, Verdaguer-Dot N, Duran-Ferrer M, Russiñol N, Vilarrasa-Blasi R, Ecker S, ... ... Rico D, et al. Whole-genome fingerprint of the DNA methylome during human B cell differentiation. Nature Genetics. PMID 26053498 DOI: 10.1038/ng.3291  0.44
2015 Earl J, Rico D, Carrillo-de-Santa-Pau E, Rodríguez-Santiago B, Méndez-Pertuz M, Auer H, Gómez G, Grossman HB, Pisano DG, Schulz WA, Pérez-Jurado LA, Carrato A, Theodorescu D, Chanock S, Valencia A, et al. The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies. Bmc Genomics. 16: 403. PMID 25997541 DOI: 10.1186/s12864-015-1450-3  0.44
2015 Ecker S, Pancaldi V, Rico D, Valencia A. Higher gene expression variability in the more aggressive subtype of chronic lymphocytic leukemia. Genome Medicine. 7: 8. PMID 25632304 DOI: 10.1186/s13073-014-0125-z  0.44
2015 Kamieniak MM, Rico D, Milne RL, Muñoz-Repeto I, Ibáñez K, Grillo MA, Domingo S, Borrego S, Cazorla A, García-Bueno JM, Hernando S, García-Donas J, Hernández-Agudo E, Y Cajal TR, Robles-Díaz L, et al. Deletion at 6q24.2-26 predicts longer survival of high-grade serous epithelial ovarian cancer patients. Molecular Oncology. 9: 422-36. PMID 25454820 DOI: 10.1016/j.molonc.2014.09.010  0.44
2014 Martinez-Garcia R, Lopez-Casas PP, Rico D, Valencia A, Hidalgo M. Colorectal cancer classification based on gene expression is not associated with FOLFIRI response. Nature Medicine. 20: 1230-1. PMID 25375918 DOI: 10.1038/nm.3701  0.44
2014 Través PG, Pimentel-Santillana M, Rico D, Rodriguez N, Miethke T, Castrillo A, Theodorakis EA, Martín-Sanz P, Palladino MA, Boscá L. Anti-inflammatory actions of acanthoic acid-related diterpenes involve activation of the PI3K p110γ/δ subunits and inhibition of NF-κB. Chemistry & Biology. 21: 955-66. PMID 25065531 DOI: 10.1016/j.chembiol.2014.06.005  0.44
2014 Martinez-Garcia R, Juan D, Rausell A, Muñoz M, Baños N, Menéndez C, Lopez-Casas PP, Rico D, Valencia A, Hidalgo M. Transcriptional dissection of pancreatic tumors engrafted in mice. Genome Medicine. 6: 27. PMID 24739241 DOI: 10.1186/gm544  0.44
2014 Través PG, Pardo V, Pimentel-Santillana M, González-Rodríguez Á, Mojena M, Rico D, Montenegro Y, Calés C, Martín-Sanz P, Valverde AM, Boscá L. Pivotal role of protein tyrosine phosphatase 1B (PTP1B) in the macrophage response to pro-inflammatory and anti-inflammatory challenge. Cell Death & Disease. 5: e1125. PMID 24625984 DOI: 10.1038/cddis.2014.90  0.44
2014 Juan D, Rico D, Marques-Bonet T, Fernández-Capetillo O, Valencia A. Late-replicating CNVs as a source of new genes. Biology Open. 3. PMID 24596403 DOI: 10.1242/bio.20147815  0.44
2014 Ferreira PG, Jares P, Rico D, Gómez-López G, Martínez-Trillos A, Villamor N, Ecker S, González-Pérez A, Knowles DG, Monlong J, Johnson R, Quesada V, Djebali S, Papasaikas P, López-Guerra M, et al. Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Research. 24: 212-26. PMID 24265505 DOI: 10.1101/gr.152132.112  0.44
2013 Juan D, Rico D, Marques-Bonet T, Fernández-Capetillo O, Valencia A. Late-replicating CNVs as a source of new genes. Biology Open. 2: 1402-11. PMID 24285712 DOI: 10.1242/bio.20136924  0.44
2013 Balbás-Martínez C, Sagrera A, Carrillo-de-Santa-Pau E, Earl J, Márquez M, Vazquez M, Lapi E, Castro-Giner F, Beltran S, Bayés M, Carrato A, Cigudosa JC, Domínguez O, Gut M, Herranz J, ... ... Rico D, et al. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy. Nature Genetics. 45: 1464-9. PMID 24121791 DOI: 10.1038/ng.2799  0.44
2013 Abascal F, Corpet A, Gurard-Levin ZA, Juan D, Ochsenbein F, Rico D, Valencia A, Almouzni G. Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b. Molecular Biology and Evolution. 30: 1853-66. PMID 23645555 DOI: 10.1093/molbev/mst086  0.44
2013 Khiari Z, Rico D, Martin-Diana AB, Barry-Ryan C. Comparison between gelatines extracted from mackerel and blue whiting bones after different pre-treatments. Food Chemistry. 139: 347-54. PMID 23561116 DOI: 10.1016/j.foodchem.2013.01.017  0.01
2013 Kamieniak MM, Muñoz-Repeto I, Rico D, Osorio A, Urioste M, García-Donas J, Hernando S, Robles-Díaz L, Ramón Y Cajal T, Cazorla A, Sáez R, García-Bueno JM, Domingo S, Borrego S, Palacios J, et al. DNA copy number profiling reveals extensive genomic loss in hereditary BRCA1 and BRCA2 ovarian carcinomas. British Journal of Cancer. 108: 1732-42. PMID 23558894 DOI: 10.1038/bjc.2013.141  0.44
2012 Kulis M, Heath S, Bibikova M, Queirós AC, Navarro A, Clot G, Martínez-Trillos A, Castellano G, Brun-Heath I, Pinyol M, Barberán-Soler S, Papasaikas P, Jares P, Beà S, Rico D, et al. Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia. Nature Genetics. 44: 1236-42. PMID 23064414 DOI: 10.1038/ng.2443  0.44
2011 Marenne G, Rodríguez-Santiago B, Closas MG, Pérez-Jurado L, Rothman N, Rico D, Pita G, Pisano DG, Kogevinas M, Silverman DT, Valencia A, Real FX, Chanock SJ, Génin E, Malats N. Assessment of copy number variation using the Illumina Infinium 1M SNP-array: a comparison of methodological approaches in the Spanish Bladder Cancer/EPICURO study. Human Mutation. 32: 240-8. PMID 21089066 DOI: 10.1002/humu.21398  0.44
2010 Guillou E, Ibarra A, Coulon V, Casado-Vela J, Rico D, Casal I, Schwob E, Losada A, Méndez J. Cohesin organizes chromatin loops at DNA replication factories. Genes & Development. 24: 2812-22. PMID 21159821 DOI: 10.1101/gad.608210  0.44
2010 Rodríguez-Santiago B, Malats N, Rothman N, Armengol L, Garcia-Closas M, Kogevinas M, Villa O, Hutchinson A, Earl J, Marenne G, Jacobs K, Rico D, Tardón A, Carrato A, Thomas G, et al. Mosaic uniparental disomies and aneuploidies as large structural variants of the human genome. American Journal of Human Genetics. 87: 129-38. PMID 20598279 DOI: 10.1016/j.ajhg.2010.06.002  0.44
2010 Carro A, Rico D, Rueda OM, Díaz-Uriarte R, Pisano DG. waviCGH: a web application for the analysis and visualization of genomic copy number alterations. Nucleic Acids Research. 38: W182-7. PMID 20507915 DOI: 10.1093/nar/gkq441  0.44
2010 Rodríguez-Prados JC, Través PG, Cuenca J, Rico D, Aragonés J, Martín-Sanz P, Cascante M, Boscá L. Substrate fate in activated macrophages: a comparison between innate, classic, and alternative activation. Journal of Immunology (Baltimore, Md. : 1950). 185: 605-14. PMID 20498354 DOI: 10.4049/jimmunol.0901698  0.44
2010 Núñez V, Alameda D, Rico D, Mota R, Gonzalo P, Cedenilla M, Fischer T, Boscá L, Glass CK, Arroyo AG, Ricote M. Retinoid X receptor alpha controls innate inflammatory responses through the up-regulation of chemokine expression. Proceedings of the National Academy of Sciences of the United States of America. 107: 10626-31. PMID 20498053 DOI: 10.1073/pnas.0913545107  0.44
2010 Di Lisio L, Gómez-López G, Sánchez-Beato M, Gómez-Abad C, Rodríguez ME, Villuendas R, Ferreira BI, Carro A, Rico D, Mollejo M, Martínez MA, Menárguez J, Díaz-Alderete A, Gil J, Cigudosa JC, et al. Mantle cell lymphoma: transcriptional regulation by microRNAs. Leukemia. 24: 1335-42. PMID 20485376 DOI: 10.1038/leu.2010.91  0.44
2010 Orenes-Piñero E, Barderas R, Rico D, Casal JI, Gonzalez-Pisano D, Navajo J, Algaba F, Piulats JM, Sanchez-Carbayo M. Serum and tissue profiling in bladder cancer combining protein and tissue arrays. Journal of Proteome Research. 9: 164-73. PMID 19883059 DOI: 10.1021/pr900273u  0.44
2009 Rico D, Martín-González A, Díaz S, de Lucas P, Gutiérrez JC. Heavy metals generate reactive oxygen species in terrestrial and aquatic ciliated protozoa. Comparative Biochemistry and Physiology. Toxicology & Pharmacology : Cbp. 149: 90-6. PMID 18725323 DOI: 10.1016/j.cbpc.2008.07.016  0.44
2007 Rico D, Vaquerizas JM, Dopazo H, Boscá L. Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences. Bmc Genomics. 8: 271. PMID 17686182 DOI: 10.1186/1471-2164-8-271  0.44
2007 Díaz S, Amaro F, Rico D, Campos V, Benítez L, Martín-González A, Hamilton EP, Orias E, Gutiérrez JC. Tetrahymena metallothioneins fall into two discrete subfamilies. Plos One. 2: e291. PMID 17356700 DOI: 10.1371/journal.pone.0000291  0.44
2006 Millán O, Rico D, Peinado H, Zarich N, Stamatakis K, Pérez-Sala D, Rojas JM, Cano A, Boscá L. Potentiation of tumor formation by topical administration of 15-deoxy-delta12,14-prostaglandin J2 in a model of skin carcinogenesis. Carcinogenesis. 27: 328-36. PMID 16113051 DOI: 10.1093/carcin/bgi213  0.44
2003 Díaz S, Martín-González A, Rico D, Gutiérrez JC. Morphogenesis of the division and encystment process of the ciliated protozoan Colpoda minima Journal of Natural History. 37: 2395-2412. DOI: 10.1080/00222930210144325  0.44
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