| Year |
Citation |
Score |
| 2023 |
Ribeiro AJM, Riziotis IG, Borkakoti N, Thornton JM. Enzyme function and evolution through the lens of bioinformatics. The Biochemical Journal. 480: 1845-1863. PMID 37991346 DOI: 10.1042/BCJ20220405 |
0.31 |
|
| 2022 |
Hasenahuer MA, Sanchis-Juan A, Laskowski RA, Baker JA, Stephenson JD, Orengo CA, Lucy Raymond F, Thornton JM. Mapping the Constrained Coding Regions in the human genome to their corresponding proteins. Journal of Molecular Biology. 167892. PMID 36410474 DOI: 10.1016/j.jmb.2022.167892 |
0.671 |
|
| 2022 |
Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, ... ... Thornton JM, et al. A structural biology community assessment of AlphaFold2 applications. Nature Structural & Molecular Biology. PMID 36344848 DOI: 10.1038/s41594-022-00849-w |
0.69 |
|
| 2022 |
Riziotis IG, Thornton JM. Capturing the geometry, function, and evolution of enzymes with 3D templates. Protein Science : a Publication of the Protein Society. 31: e4363. PMID 35762726 DOI: 10.1002/pro.4363 |
0.355 |
|
| 2022 |
Riziotis IG, Ribeiro AJM, Borkakoti N, Thornton JM. Conformational Variation in Enzyme Catalysis: A Structural Study on Catalytic Residues. Journal of Molecular Biology. 434: 167517. PMID 35240125 DOI: 10.1016/j.jmb.2022.167517 |
0.325 |
|
| 2021 |
Laskowski RA, Thornton JM. PDBsum extras: SARS-CoV-2 and AlphaFold models. Protein Science : a Publication of the Protein Society. PMID 34779073 DOI: 10.1002/pro.4238 |
0.697 |
|
| 2021 |
Thornton JM, Laskowski RA, Borkakoti N. AlphaFold heralds a data-driven revolution in biology and medicine. Nature Medicine. 27: 1666-1669. PMID 34642488 DOI: 10.1038/s41591-021-01533-0 |
0.583 |
|
| 2021 |
Magraner-Pardo L, Laskowski RA, Pons T, Thornton JM. A computational and structural analysis of germline and somatic variants affecting the DDR mechanism, and their impact on human diseases. Scientific Reports. 11: 14268. PMID 34253785 DOI: 10.1038/s41598-021-93715-6 |
0.651 |
|
| 2021 |
Ochoa R, Laskowski RA, Thornton JM, Cossio P. Impact of Structural Observables From Simulations to Predict the Effect of Single-Point Mutations in MHC Class II Peptide Binders. Frontiers in Molecular Biosciences. 8: 636562. PMID 34222328 DOI: 10.3389/fmolb.2021.636562 |
0.616 |
|
| 2020 |
Ochoa R, Magnitov M, Laskowski RA, Cossio P, Thornton JM. An automated protocol for modelling peptide substrates to proteases. Bmc Bioinformatics. 21: 586. PMID 33375946 DOI: 10.1186/s12859-020-03931-6 |
0.653 |
|
| 2020 |
Bjedov I, Cochemé HM, Foley A, Wieser D, Woodling NS, Castillo-Quan JI, Norvaisas P, Lujan C, Regan J, Toivonen JM, Murphy MP, Thornton J, Kinghorn KJ, Neufeld TP, Cabreiro F, et al. Fine-tuning autophagy maximises lifespan and is associated with changes in mitochondrial gene expression in Drosophila. Plos Genetics. 16: e1009083. PMID 33253201 DOI: 10.1371/journal.pgen.1009083 |
0.595 |
|
| 2020 |
Dhillon P, Thornton JM. In conversation with Janet Thornton. The Febs Journal. 287: 4106-4113. PMID 33026716 DOI: 10.1111/febs.15567 |
0.305 |
|
| 2020 |
Orengo C, Velankar S, Wodak S, Zoete V, Bonvin AMJJ, Elofsson A, Feenstra KA, Gerloff DL, Hamelryck T, Hancock JM, Helmer-Citterich M, Hospital A, Orozco M, Perrakis A, Rarey M, ... ... Thornton JM, et al. A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community). F1000research. 9. PMID 32566135 DOI: 10.12688/F1000Research.20559.1 |
0.342 |
|
| 2020 |
Sanchis-Juan A, Hasenahuer MA, Baker JA, McTague A, Barwick K, Kurian MA, Duarte ST, Carss KJ, Thornton J, Raymond FL. Structural analysis of pathogenic missense mutations in GABRA2 and identification of a novel de novo variant in the desensitization gate. Molecular Genetics & Genomic Medicine. e1106. PMID 32347641 DOI: 10.1002/Mgg3.1106 |
0.319 |
|
| 2019 |
Ribeiro AJM, Tyzack JD, Borkakoti N, Holliday GL, Thornton JM. A global analysis of function and conservation of catalytic residues in enzymes. The Journal of Biological Chemistry. PMID 31796628 DOI: 10.1074/Jbc.Rev119.006289 |
0.795 |
|
| 2019 |
Ribeiro AJM, Tyzack JD, Borkakoti N, Thornton JM. Identifying pseudoenzymes using functional annotation. How loss of function correlates with mutations in the catalytic site. The Febs Journal. PMID 31733177 DOI: 10.1111/Febs.15142 |
0.38 |
|
| 2019 |
Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM. Exploring Chemical Biosynthetic Design Space with Transform-MinER. Acs Synthetic Biology. PMID 31647630 DOI: 10.1021/Acssynbio.9B00105 |
0.317 |
|
| 2019 |
Laskowski RA, Stephenson JD, Sillitoe I, Orengo CA, Thornton JM. VarSite: disease variants and protein structure. Protein Science : a Publication of the Protein Society. PMID 31606900 DOI: 10.1002/Pro.3746 |
0.707 |
|
| 2019 |
Ribeiro AJM, Das S, Dawson N, Zaru R, Orchard S, Thornton JM, Orengo C, Zeqiraj E, Murphy JM, Eyers PA. Emerging concepts in pseudoenzyme classification, evolution, and signaling. Science Signaling. 12. PMID 31409758 DOI: 10.1126/Scisignal.Aat9797 |
0.39 |
|
| 2019 |
Stephenson JD, Laskowski RA, Nightingale A, Hurles ME, Thornton JM. VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations. Bioinformatics (Oxford, England). PMID 31192369 DOI: 10.1093/Bioinformatics/Btz482 |
0.709 |
|
| 2019 |
Mukhopadhyay A, Borkakoti N, Pravda L, Tyzack JD, Thornton JM, Velankar S. Finding enzyme cofactors in Protein Data Bank. Bioinformatics (Oxford, England). PMID 30759194 DOI: 10.1093/Bioinformatics/Btz115 |
0.418 |
|
| 2019 |
Tyzack JD, Furnham N, Sillitoe I, Orengo CM, Thornton JM. Exploring Enzyme Evolution from Changes in Sequence, Structure, and Function. Methods in Molecular Biology (Clifton, N.J.). 1851: 263-275. PMID 30298402 DOI: 10.1007/978-1-4939-8736-8_14 |
0.728 |
|
| 2018 |
Sillitoe I, Dawson N, Lewis TE, Das S, Lees JG, Ashford P, Tolulope A, Scholes HM, Senatorov I, Bujan A, Ceballos Rodriguez-Conde F, Dowling B, Thornton J, Orengo CA. CATH: expanding the horizons of structure-based functional annotations for genome sequences. Nucleic Acids Research. PMID 30398663 DOI: 10.1093/Nar/Gky1097 |
0.401 |
|
| 2018 |
Tyzack JD, Fernando L, Ribeiro AJM, Borkakoti N, Thornton JM. Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological Substrates. Structure (London, England : 1993). PMID 29551288 DOI: 10.1016/J.Str.2018.02.009 |
0.39 |
|
| 2018 |
Schneider B, Orengo C, Schwede T, Sussman JL, Thornton JM, Velankar S, Wodak S. Coordination of structural bioinformatics activities across Europe Acta Crystallographica Section a Foundations and Advances. 74: e231-e231. DOI: 10.7490/F1000Research.1115607.1 |
0.328 |
|
| 2017 |
Valasatava Y, Rosato A, Furnham N, Thornton JM, Andreini C. To what extent do structural changes in catalytic metal sites affect enzyme function? Journal of Inorganic Biochemistry. 179: 40-53. PMID 29161638 DOI: 10.1016/J.Jinorgbio.2017.11.002 |
0.694 |
|
| 2017 |
Ribeiro AJM, Holliday GL, Furnham N, Tyzack JD, Ferris K, Thornton JM. Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. Nucleic Acids Research. PMID 29106569 DOI: 10.1093/Nar/Gkx1012 |
0.799 |
|
| 2017 |
Martin-Herranz DE, Ribeiro AJM, Krueger F, Thornton JM, Reik W, Stubbs TM. cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches. Nucleic Acids Research. PMID 29036576 DOI: 10.1093/Nar/Gkx814 |
0.356 |
|
| 2017 |
Suri M, Evers JMG, Laskowski RA, O'Brien S, Baker K, Clayton-Smith J, Dabir T, Josifova D, Joss S, Kerr B, Kraus A, McEntagart M, Morton J, Smith A, Splitt M, ... Thornton JM, et al. Protein structure and phenotypic analysis of pathogenic and population missense variants in STXBP1. Molecular Genetics & Genomic Medicine. 5: 495-507. PMID 28944233 DOI: 10.1002/Mgg3.304 |
0.677 |
|
| 2017 |
Tyzack JD, Furnham N, Sillitoe I, Orengo CM, Thornton JM. Understanding enzyme function evolution from a computational perspective. Current Opinion in Structural Biology. 47: 131-139. PMID 28892668 DOI: 10.1016/J.Sbi.2017.08.003 |
0.716 |
|
| 2017 |
Laskowski RA, Jabƚońska J, Pravda L, Vařeková RS, Thornton JM. PDBsum: Structural summaries of PDB entries. Protein Science : a Publication of the Protein Society. PMID 28875543 DOI: 10.1002/Pro.3289 |
0.713 |
|
| 2017 |
Ziehm M, Kaur S, Ivanov DK, Ballester PJ, Marcus D, Partridge L, Thornton JM. Drug repurposing for aging research using model organisms. Aging Cell. PMID 28620943 DOI: 10.1111/Acel.12626 |
0.775 |
|
| 2017 |
Evers JM, Laskowski RA, Bertolli M, Clayton-Smith J, Deshpande C, Eason J, Elmslie F, Flinter F, Gardiner C, Hurst JA, Kingston H, Kini U, Lampe AK, Lim D, Male A, ... ... Thornton JM, et al. Structural analysis of pathogenic mutations in the DYRK1A gene in patients with developmental disorders. Human Molecular Genetics. PMID 28053047 DOI: 10.1093/Hmg/Ddw409 |
0.651 |
|
| 2016 |
Mascotti ML, Ayub MJ, Furnham N, Thornton JM, Laskowski RA. Chopping and changing: The evolution of the flavin-dependent monooxygenases. Journal of Molecular Biology. PMID 27423402 DOI: 10.1016/J.Jmb.2016.07.003 |
0.795 |
|
| 2016 |
Rahman SA, Torrance G, Baldacci L, Martínez Cuesta S, Fenninger F, Gopal N, Choudhary S, May JW, Holliday GL, Steinbeck C, Thornton JM. Reaction Decoder Tool (RDT): extracting features from chemical reactions. Bioinformatics (Oxford, England). PMID 27153692 DOI: 10.1093/Bioinformatics/Btw096 |
0.773 |
|
| 2016 |
Martínez Cuesta S, Rahman SA, Thornton JM. Exploring the chemistry and evolution of the isomerases. Proceedings of the National Academy of Sciences of the United States of America. PMID 26842835 DOI: 10.1073/Pnas.1509494113 |
0.548 |
|
| 2016 |
Dönertaş HM, Martínez Cuesta S, Rahman SA, Thornton JM. Characterising Complex Enzyme Reaction Data. Plos One. 11: e0147952. PMID 26840640 DOI: 10.1371/Journal.Pone.0147952 |
0.554 |
|
| 2016 |
Laskowski RA, Tyagi N, Johnson D, Joss S, Kinning E, McWilliam C, Splitt M, Thornton JM, Firth HV, Wright CF. Integrating population variation and protein structural analysis to improve clinical interpretation of missense variation: application to the WD40 domain. Human Molecular Genetics. PMID 26740553 DOI: 10.1093/Hmg/Ddv625 |
0.674 |
|
| 2015 |
Laskowski RA, Thornton JM. Proteins: interaction at a distance. Iucrj. 2: 609-610. PMID 26594367 DOI: 10.1107/S2052252515020217 |
0.67 |
|
| 2015 |
Furnham N, Dawson NL, Rahman SA, Thornton JM, Orengo CA. Large-Scale Analysis Exploring Evolution of Catalytic Machineries and Mechanisms in Enzyme Superfamilies. Journal of Molecular Biology. PMID 26585402 DOI: 10.1016/J.Jmb.2015.11.010 |
0.777 |
|
| 2015 |
Tyagi N, Farnell EJ, Fitzsimmons CM, Ryan S, Tukahebwa E, Maizels RM, Dunne DW, Thornton JM, Furnham N. Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity. Plos Computational Biology. 11: e1004546. PMID 26513360 DOI: 10.1371/Journal.Pcbi.1004546 |
0.691 |
|
| 2015 |
Hinsley KE, Marshall AC, Hurtig MH, Thornton JM, O'Connell CA, Porter CL, Connor JA, Hickey PA. Monitoring the health of the work environment with a daily assessment tool: the REAL - Relative Environment Assessment Lens - indicator. Cardiology in the Young. 1-8. PMID 26423013 DOI: 10.1017/S1047951115001808 |
0.404 |
|
| 2015 |
Sillitoe I, Dawson N, Thornton J, Orengo C. The history of the CATH structural classification of protein domains. Biochimie. PMID 26253692 DOI: 10.1016/J.Biochi.2015.08.004 |
0.443 |
|
| 2015 |
Ziehm M, Ivanov DK, Bhat A, Partridge L, Thornton JM. SurvCurv database and online survival analysis platform update. Bioinformatics (Oxford, England). PMID 26249811 DOI: 10.1093/Bioinformatics/Btv463 |
0.728 |
|
| 2015 |
Martínez Cuesta S, Rahman SA, Furnham N, Thornton JM. The Classification and Evolution of Enzyme Function. Biophysical Journal. PMID 25986631 DOI: 10.1016/J.Bpj.2015.04.020 |
0.763 |
|
| 2015 |
Ivanov DK, Escott-Price V, Ziehm M, Magwire MM, Mackay TF, Partridge L, Thornton JM. Longevity GWAS Using the Drosophila Genetic Reference Panel. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 25922346 DOI: 10.1093/Gerona/Glv047 |
0.733 |
|
| 2015 |
Sillitoe I, Lewis TE, Cuff A, Das S, Ashford P, Dawson NL, Furnham N, Laskowski RA, Lee D, Lees JG, Lehtinen S, Studer RA, Thornton J, Orengo CA. CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Research. 43: D376-81. PMID 25348408 DOI: 10.1093/Nar/Gku947 |
0.806 |
|
| 2015 |
Laskowski RA, Thornton JM. Proteins: Interaction at a distance Iucrj. 2: 609-610. DOI: 10.1107/S2052252515020217 |
0.63 |
|
| 2015 |
Thornton J. The Evolution of Enzyme Mechanisms and Functional Diversity Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.211 |
0.352 |
|
| 2014 |
Martinez Cuesta S, Furnham N, Rahman SA, Sillitoe I, Thornton JM. The evolution of enzyme function in the isomerases. Current Opinion in Structural Biology. 26: 121-30. PMID 25000289 DOI: 10.1016/J.Sbi.2014.06.002 |
0.762 |
|
| 2014 |
Holliday GL, Rahman SA, Furnham N, Thornton JM. Exploring the biological and chemical complexity of the ligases. Journal of Molecular Biology. 426: 2098-111. PMID 24657765 DOI: 10.1016/J.Jmb.2014.03.008 |
0.811 |
|
| 2014 |
Riesen M, Feyst I, Rattanavirotkul N, Ezcurra M, Tullet JM, Papatheodorou I, Ziehm M, Au C, Gilliat AF, Hellberg J, Thornton JM, Gems D. MDL-1, a growth- and tumor-suppressor, slows aging and prevents germline hyperplasia and hypertrophy in C. elegans. Aging. 6: 98-117. PMID 24531613 |
0.701 |
|
| 2014 |
Tullet JM, Araiz C, Sanders MJ, Au C, Benedetto A, Papatheodorou I, Clark E, Schmeisser K, Jones D, Schuster EF, Thornton JM, Gems D. DAF-16/FoxO directly regulates an atypical AMP-activated protein kinase gamma isoform to mediate the effects of insulin/IGF-1 signaling on aging in Caenorhabditis elegans. Plos Genetics. 10: e1004109. PMID 24516399 DOI: 10.1371/Journal.Pgen.1004109 |
0.553 |
|
| 2014 |
Rahman SA, Cuesta SM, Furnham N, Holliday GL, Thornton JM. EC-BLAST: a tool to automatically search and compare enzyme reactions. Nature Methods. 11: 171-4. PMID 24412978 DOI: 10.1038/Nmeth.2803 |
0.793 |
|
| 2014 |
Furnham N, Holliday GL, de Beer TA, Jacobsen JO, Pearson WR, Thornton JM. The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. Nucleic Acids Research. 42: D485-9. PMID 24319146 DOI: 10.1093/Nar/Gkt1243 |
0.816 |
|
| 2014 |
de Beer TA, Berka K, Thornton JM, Laskowski RA. PDBsum additions. Nucleic Acids Research. 42: D292-6. PMID 24153109 DOI: 10.1093/nar/gkt940 |
0.765 |
|
| 2013 |
de Beer TA, Laskowski RA, Parks SL, Sipos B, Goldman N, Thornton JM. Amino acid changes in disease-associated variants differ radically from variants observed in the 1000 genomes project dataset. Plos Computational Biology. 9: e1003382. PMID 24348229 DOI: 10.1371/Journal.Pcbi.1003382 |
0.773 |
|
| 2013 |
de Beer TA, Laskowski RA, Duban ME, Chan AW, Anderson WF, Thornton JM. LigSearch: a knowledge-based web server to identify likely ligands for a protein target. Acta Crystallographica. Section D, Biological Crystallography. 69: 2395-402. PMID 24311580 DOI: 10.1107/S0907444913022294 |
0.764 |
|
| 2013 |
Ziehm M, Thornton JM. Unlocking the potential of survival data for model organisms through a new database and online analysis platform: SurvCurv. Aging Cell. 12: 910-6. PMID 23826631 DOI: 10.1111/Acel.12121 |
0.735 |
|
| 2013 |
Ziehm M, Piper MD, Thornton JM. Analysing variation in Drosophila aging across independent experimental studies: a meta-analysis of survival data. Aging Cell. 12: 917-22. PMID 23795998 DOI: 10.1111/Acel.12123 |
0.725 |
|
| 2013 |
Li X, Wilmanns M, Thornton J, Köhn M. Elucidating human phosphatase-substrate networks. Science Signaling. 6: rs10. PMID 23674824 DOI: 10.1126/Scisignal.2003203 |
0.4 |
|
| 2013 |
Ivanov DK, Papatheodorou I, Ziehm M, Thornton JM. Transcriptional feedback in the insulin signalling pathway modulates ageing in both Caenorhabditis elegans and Drosophila melanogaster. Molecular Biosystems. 9: 1756-64. PMID 23624434 DOI: 10.1039/C3Mb25485B |
0.722 |
|
| 2013 |
Sillitoe I, Cuff AL, Dessailly BH, Dawson NL, Furnham N, Lee D, Lees JG, Lewis TE, Studer RA, Rentzsch R, Yeats C, Thornton JM, Orengo CA. New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Research. 41: D490-8. PMID 23203873 DOI: 10.1093/Nar/Gks1211 |
0.723 |
|
| 2013 |
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, ... ... Thornton JM, et al. The EBI enzyme portal. Nucleic Acids Research. 41: D773-80. PMID 23175605 DOI: 10.1093/Nar/Gks1112 |
0.809 |
|
| 2013 |
Furnham N, Laskowski RA, Thornton JM. Abstracting knowledge from the protein data bank. Biopolymers. 99: 183-8. PMID 23023892 DOI: 10.1002/Bip.22107 |
0.811 |
|
| 2012 |
Papatheodorou I, Ziehm M, Wieser D, Alic N, Partridge L, Thornton JM. Using answer set programming to integrate RNA expression with signalling pathway information to infer how mutations affect ageing. Plos One. 7: e50881. PMID 23251396 DOI: 10.1371/Journal.Pone.0050881 |
0.778 |
|
| 2012 |
Furnham N, de Beer TA, Thornton JM. Current challenges in genome annotation through structural biology and bioinformatics. Current Opinion in Structural Biology. 22: 594-601. PMID 22884875 DOI: 10.1016/J.Sbi.2012.07.005 |
0.769 |
|
| 2012 |
Furnham N, Sillitoe I, Holliday GL, Cuff AL, Laskowski RA, Orengo CA, Thornton JM. Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies. Plos Computational Biology. 8: e1002403. PMID 22396634 DOI: 10.1371/Journal.Pcbi.1002403 |
0.817 |
|
| 2012 |
Furnham N, Sillitoe I, Holliday GL, Cuff AL, Rahman SA, Laskowski RA, Orengo CA, Thornton JM. FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. Nucleic Acids Research. 40: D776-82. PMID 22006843 DOI: 10.1093/Nar/Gkr852 |
0.82 |
|
| 2012 |
Cuesta SM, Furnham N, Thornton JM. Evolution of NAD (P)H binding domain superfamily F1000research. 3. DOI: 10.7490/F1000Research.1089820.1 |
0.647 |
|
| 2012 |
Orengo C, Thornton J. Protein‐fold classification International Tables For Crystallography. DOI: 10.1107/97809553602060000890 |
0.393 |
|
| 2012 |
Laskowski RA, MacArthur MW, Thornton JM. PROCHECK: validation of protein‐structure coordinates International Tables For Crystallography. 684-687. DOI: 10.1107/97809553602060000882 |
0.315 |
|
| 2011 |
McParland V, Varsano G, Li X, Thornton J, Baby J, Aravind A, Meyer C, Pavic K, Rios P, Köhn M. The metastasis-promoting phosphatase PRL-3 shows activity toward phosphoinositides. Biochemistry. 50: 7579-90. PMID 21806020 DOI: 10.1021/Bi201095Z |
0.336 |
|
| 2011 |
Alic N, Andrews TD, Giannakou ME, Papatheodorou I, Slack C, Hoddinott MP, Cochemé HM, Schuster EF, Thornton JM, Partridge L. Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling. Molecular Systems Biology. 7: 502. PMID 21694719 DOI: 10.1038/Msb.2011.36 |
0.523 |
|
| 2011 |
Holliday GL, Fischer JD, Mitchell JB, Thornton JM. Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis. The Febs Journal. 278: 3835-45. PMID 21605342 DOI: 10.1111/J.1742-4658.2011.08190.X |
0.815 |
|
| 2011 |
Lee D, de Beer TA, Laskowski RA, Thornton JM, Orengo CA. 1,000 structures and more from the MCSG. Bmc Structural Biology. 11: 2. PMID 21219649 DOI: 10.1186/1472-6807-11-2 |
0.773 |
|
| 2011 |
Wieser D, Papatheodorou I, Ziehm M, Thornton JM. Computational biology for ageing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 366: 51-63. PMID 21115530 DOI: 10.1098/Rstb.2010.0286 |
0.778 |
|
| 2011 |
Cuff AL, Sillitoe I, Lewis T, Clegg AB, Rentzsch R, Furnham N, Pellegrini-Calace M, Jones D, Thornton J, Orengo CA. Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic Acids Research. 39: D420-6. PMID 21097779 DOI: 10.1093/Nar/Gkq1001 |
0.83 |
|
| 2011 |
Rahman SA, Torrence G, Fenninger F, Baldacci L, Gopal N, Holliday GL, Thornton JM. Automated analysis of enzyme reaction mechanisms F1000research. 2. DOI: 10.7490/F1000Research.2088.1 |
0.526 |
|
| 2010 |
Fischer JD, Holliday GL, Rahman SA, Thornton JM. The structures and physicochemical properties of organic cofactors in biocatalysis. Journal of Molecular Biology. 403: 803-24. PMID 20850456 DOI: 10.1016/J.Jmb.2010.09.018 |
0.809 |
|
| 2010 |
Schuster E, McElwee JJ, Tullet JM, Doonan R, Matthijssens F, Reece-Hoyes JS, Hope IA, Vanfleteren JR, Thornton JM, Gems D. DamID in C. elegans reveals longevity-associated targets of DAF-16/FoxO. Molecular Systems Biology. 6: 399. PMID 20706209 DOI: 10.1038/Msb.2010.54 |
0.52 |
|
| 2010 |
Fischer JD, Holliday GL, Thornton JM. The CoFactor database: organic cofactors in enzyme catalysis. Bioinformatics (Oxford, England). 26: 2496-7. PMID 20679331 DOI: 10.1093/Bioinformatics/Btq442 |
0.8 |
|
| 2010 |
Smith LJ, Kahraman A, Thornton JM. Heme proteins--diversity in structural characteristics, function, and folding. Proteins. 78: 2349-68. PMID 20544970 DOI: 10.1002/Prot.22747 |
0.615 |
|
| 2010 |
Slack C, Werz C, Wieser D, Alic N, Foley A, Stocker H, Withers DJ, Thornton JM, Hafen E, Partridge L. Regulation of lifespan, metabolism, and stress responses by the Drosophila SH2B protein, Lnk. Plos Genetics. 6: e1000881. PMID 20333234 DOI: 10.1371/Journal.Pgen.1000881 |
0.684 |
|
| 2010 |
Oliva R, Calamita G, Thornton JM, Pellegrini-Calace M. Electrostatics of aquaporin and aquaglyceroporin channels correlates with their transport selectivity. Proceedings of the National Academy of Sciences of the United States of America. 107: 4135-40. PMID 20147624 DOI: 10.1073/Pnas.0910632107 |
0.753 |
|
| 2010 |
Kahraman A, Morris RJ, Laskowski RA, Favia AD, Thornton JM. On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins. Proteins. 78: 1120-36. PMID 19927322 DOI: 10.1002/Prot.22633 |
0.769 |
|
| 2010 |
Bashton M, Thornton JM. Domain-ligand mapping for enzymes. Journal of Molecular Recognition : Jmr. 23: 194-208. PMID 19810051 DOI: 10.1002/Jmr.992 |
0.721 |
|
| 2010 |
Talavera D, Taylor MS, Thornton JM. The (non)malignancy of cancerous amino acidic substitutions. Proteins. 78: 518-29. PMID 19787769 DOI: 10.1002/Prot.22574 |
0.616 |
|
| 2009 |
Rahman SA, Bashton M, Holliday GL, Schrader R, Thornton JM. Small Molecule Subgraph Detector (SMSD) toolkit. Journal of Cheminformatics. 1: 12. PMID 20298518 DOI: 10.1186/1758-2946-1-12 |
0.784 |
|
| 2009 |
Capra JA, Laskowski RA, Thornton JM, Singh M, Funkhouser TA. Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure. Plos Computational Biology. 5: e1000585. PMID 19997483 DOI: 10.1371/Journal.Pcbi.1000585 |
0.721 |
|
| 2009 |
Selman C, Tullet JM, Wieser D, Irvine E, Lingard SJ, Choudhury AI, Claret M, Al-Qassab H, Carmignac D, Ramadani F, Woods A, Robinson IC, Schuster E, Batterham RL, Kozma SC, ... ... Thornton JM, et al. Ribosomal protein S6 kinase 1 signaling regulates mammalian life span. Science (New York, N.Y.). 326: 140-4. PMID 19797661 DOI: 10.1126/Science.1177221 |
0.719 |
|
| 2009 |
Macchiarulo A, Thornton JM, Nobeli I. Mapping human metabolic pathways in the small molecule chemical space. Journal of Chemical Information and Modeling. 49: 2272-89. PMID 19795883 DOI: 10.1021/Ci900196U |
0.748 |
|
| 2009 |
Oliva R, Thornton JM, Pellegrini-Calace M. PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins. Bioinformatics (Oxford, England). 25: 3183-4. PMID 19762348 DOI: 10.1093/Bioinformatics/Btp545 |
0.783 |
|
| 2009 |
Cuff A, Redfern OC, Greene L, Sillitoe I, Lewis T, Dibley M, Reid A, Pearl F, Dallman T, Todd A, Garratt R, Thornton J, Orengo C. The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space. Structure (London, England : 1993). 17: 1051-62. PMID 19679085 DOI: 10.1016/J.Str.2009.06.015 |
0.625 |
|
| 2009 |
Furnham N, Garavelli JS, Apweiler R, Thornton JM. Missing in action: enzyme functional annotations in biological databases. Nature Chemical Biology. 5: 521-5. PMID 19620987 DOI: 10.1038/Nchembio0809-521 |
0.704 |
|
| 2009 |
Laskowski RA, Thornton JM, Sternberg MJ. The fine details of evolution. Biochemical Society Transactions. 37: 723-6. PMID 19614583 DOI: 10.1042/Bst0370723 |
0.751 |
|
| 2009 |
Pellegrini-Calace M, Maiwald T, Thornton JM. PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure. Plos Computational Biology. 5: e1000440. PMID 19609355 DOI: 10.1371/Journal.Pcbi.1000440 |
0.769 |
|
| 2009 |
Holliday GL, Mitchell JB, Thornton JM. Understanding the functional roles of amino acid residues in enzyme catalysis. Journal of Molecular Biology. 390: 560-77. PMID 19447117 DOI: 10.1016/J.Jmb.2009.05.015 |
0.807 |
|
| 2009 |
Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM. Metal-MACiE: a database of metals involved in biological catalysis. Bioinformatics (Oxford, England). 25: 2088-9. PMID 19369503 DOI: 10.1093/Bioinformatics/Btp256 |
0.729 |
|
| 2009 |
Laskowski RA, Gerick F, Thornton JM. The structural basis of allosteric regulation in proteins. Febs Letters. 583: 1692-8. PMID 19303011 DOI: 10.1016/J.Febslet.2009.03.019 |
0.816 |
|
| 2009 |
Andreini C, Bertini I, Cavallaro G, Najmanovich RJ, Thornton JM. Structural analysis of metal sites in proteins: non-heme iron sites as a case study. Journal of Molecular Biology. 388: 356-80. PMID 19265704 DOI: 10.1016/J.Jmb.2009.02.052 |
0.707 |
|
| 2009 |
Talavera D, Laskowski RA, Thornton JM. WSsas: a web service for the annotation of functional residues through structural homologues. Bioinformatics (Oxford, England). 25: 1192-4. PMID 19251774 DOI: 10.1093/Bioinformatics/Btp116 |
0.796 |
|
| 2009 |
Loewenstein Y, Raimondo D, Redfern OC, Watson J, Frishman D, Linial M, Orengo C, Thornton J, Tramontano A. Protein function annotation by homology-based inference. Genome Biology. 10: 207. PMID 19226439 DOI: 10.1186/Gb-2009-10-2-207 |
0.551 |
|
| 2009 |
Nobeli I, Favia AD, Thornton JM. Protein promiscuity and its implications for biotechnology. Nature Biotechnology. 27: 157-67. PMID 19204698 DOI: 10.1038/Nbt1519 |
0.737 |
|
| 2009 |
Persson B, Kallberg Y, Bray JE, Bruford E, Dellaporta SL, Favia AD, Duarte RG, Jörnvall H, Kavanagh KL, Kedishvili N, Kisiela M, Maser E, Mindnich R, Orchard S, Penning TM, ... Thornton JM, et al. The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. Chemico-Biological Interactions. 178: 94-8. PMID 19027726 DOI: 10.1016/J.Cbi.2008.10.040 |
0.389 |
|
| 2009 |
Reeves GA, Talavera D, Thornton JM. Genome and proteome annotation: organization, interpretation and integration. Journal of the Royal Society, Interface / the Royal Society. 6: 129-47. PMID 19019817 DOI: 10.1098/Rsif.2008.0341 |
0.718 |
|
| 2009 |
Cuff AI, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA. The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies Nucleic Acids Research. 37: D310-D314. PMID 18996897 DOI: 10.1093/Nar/Gkn877 |
0.632 |
|
| 2009 |
Watson JD, Thornton JM. Protein function prediction from structure in structural genomics and its contribution to the study of health and disease Nato Science For Peace and Security Series a: Chemistry and Biology. 201-215. DOI: 10.1007/978-90-481-2339-1-13 |
0.457 |
|
| 2009 |
Watson JD, Thornton JM. Case studies: Function predictions of structural genomics results From Protein Structure to Function With Bioinformatics. 273-291. DOI: 10.1007/978-1-4020-9058-5_11 |
0.406 |
|
| 2009 |
Watson JD, Thornton JM. Protein function prediction from structure in structural genomics and its contribution to the study of health and disease Nato Science For Peace and Security Series a: Chemistry and Biology. 201-215. |
0.457 |
|
| 2009 |
Sternberg M, Thornton J, Laskowski R. Protein evolution - Sequence, structure and systems Biochemist. 31: 52-52. |
0.661 |
|
| 2008 |
Reeves GA, Eilbeck K, Magrane M, O'Donovan C, Montecchi-Palazzi L, Harris MA, Orchard S, Jimenez RC, Prlic A, Hubbard TJ, Hermjakob H, Thornton JM. The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinformatics (Oxford, England). 24: 2767-72. PMID 18936051 DOI: 10.1093/Bioinformatics/Btn528 |
0.628 |
|
| 2008 |
Freilich S, Goldovsky L, Ouzounis CA, Thornton JM. Metabolic innovations towards the human lineage. Bmc Evolutionary Biology. 8: 247. PMID 18782449 DOI: 10.1186/1471-2148-8-247 |
0.624 |
|
| 2008 |
Najmanovich R, Kurbatova N, Thornton J. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites Bioinformatics. 24: i105-i111. PMID 18689810 DOI: 10.1093/bioinformatics/btn263 |
0.686 |
|
| 2008 |
Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM. Metal ions in biological catalysis: from enzyme databases to general principles. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 13: 1205-18. PMID 18604568 DOI: 10.1007/S00775-008-0404-5 |
0.743 |
|
| 2008 |
Laskowski RA, Thornton JM. Understanding the molecular machinery of genetics through 3D structures. Nature Reviews. Genetics. 9: 141-51. PMID 18160966 DOI: 10.1038/Nrg2273 |
0.7 |
|
| 2008 |
Favia AD, Nobeli I, Glaser F, Thornton JM. Molecular docking for substrate identification: the short-chain dehydrogenases/reductases. Journal of Molecular Biology. 375: 855-74. PMID 18036612 DOI: 10.1016/J.Jmb.2007.10.065 |
0.806 |
|
| 2008 |
Torrance JW, Macarthur MW, Thornton JM. Evolution of binding sites for zinc and calcium ions playing structural roles. Proteins. 71: 813-30. PMID 18004751 DOI: 10.1002/Prot.21741 |
0.742 |
|
| 2008 |
Selman C, Lingard S, Choudhury AI, Batterham RL, Claret M, Clements M, Ramadani F, Okkenhaug K, Schuster E, Blanc E, Piper MD, Al-Qassab H, Speakman JR, Carmignac D, Robinson IC, ... Thornton JM, et al. Evidence for lifespan extension and delayed age-related biomarkers in insulin receptor substrate 1 null mice. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 22: 807-18. PMID 17928362 DOI: 10.1096/Fj.07-9261Com |
0.631 |
|
| 2008 |
Bashton M, Nobeli I, Thornton JM. PROCOGNATE: a cognate ligand domain mapping for enzymes. Nucleic Acids Research. 36: D618-22. PMID 17720712 DOI: 10.1093/Nar/Gkm611 |
0.817 |
|
| 2008 |
Tress ML, Casadio R, Giorgetti A, Hallin PF, Juncker AS, Kulberkyte E, Martelli P, Raimondo D, Reeves GA, Thornton JM, Tramontano A, Wang K, Wesselink JJ, Valencia A. Alternative splicing in the ENCODE protein complement Modern Genome Annotation: the Biosapiens Network. 453-484. DOI: 10.1007/978-3-211-75123-7_20 |
0.522 |
|
| 2008 |
Watson JD, Thornton JM, Tress ML, Lopez G, Valencia A, Redfern O, Orengo CA, Sommer I, Domingues FS. Structure to function Modern Genome Annotation: the Biosapiens Network. 239-262. DOI: 10.1007/978-3-211-75123-7_12 |
0.427 |
|
| 2008 |
Torrance JW, Thornton JM. Structure-Based Prediction of Enzymes and Their Active Sites Prediction of Protein Structures, Functions, and Interactions. 187-209. DOI: 10.1002/9780470741894.ch8 |
0.526 |
|
| 2007 |
Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ. Construction, visualisation, and clustering of transcription networks from microarray expression data. Plos Computational Biology. 3: 2032-42. PMID 17967053 DOI: 10.1371/Journal.Pcbi.0030206 |
0.62 |
|
| 2007 |
Ward JJ, Thornton JM. Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network. Plos Computational Biology. 3: 1993-2002. PMID 17967049 DOI: 10.1371/Journal.Pcbi.0030198 |
0.495 |
|
| 2007 |
Holliday GL, Thornton JM, Marquet A, Smith AG, Rébeillé F, Mendel R, Schubert HL, Lawrence AD, Warren MJ. Evolution of enzymes and pathways for the biosynthesis of cofactors. Natural Product Reports. 24: 972-87. PMID 17898893 DOI: 10.1039/B703107F |
0.758 |
|
| 2007 |
Holliday GL, Almonacid DE, Mitchell JB, Thornton JM. The chemistry of protein catalysis. Journal of Molecular Biology. 372: 1261-77. PMID 17727879 DOI: 10.1016/J.Jmb.2007.07.034 |
0.804 |
|
| 2007 |
McElwee JJ, Schuster E, Blanc E, Piper MD, Thomas JH, Patel DS, Selman C, Withers DJ, Thornton JM, Partridge L, Gems D. Evolutionary conservation of regulated longevity assurance mechanisms. Genome Biology. 8: R132. PMID 17612391 DOI: 10.1186/Gb-2007-8-7-R132 |
0.663 |
|
| 2007 |
Schuster EF, Blanc E, Partridge L, Thornton JM. Estimation and correction of non-specific binding in a large-scale spike-in experiment. Genome Biology. 8: R126. PMID 17594493 DOI: 10.1186/Gb-2007-8-6-R126 |
0.661 |
|
| 2007 |
Schuster EF, Blanc E, Partridge L, Thornton JM. Correcting for sequence biases in present/absent calls. Genome Biology. 8: R125. PMID 17594492 DOI: 10.1186/Gb-2007-8-6-R125 |
0.66 |
|
| 2007 |
Torrance JW, Holliday GL, Mitchell JB, Thornton JM. The geometry of interactions between catalytic residues and their substrates. Journal of Molecular Biology. 369: 1140-52. PMID 17466330 DOI: 10.1016/J.Jmb.2007.03.055 |
0.814 |
|
| 2007 |
Allali-Hassani A, Pan PW, Dombrovski L, Najmanovich R, Tempel W, Dong A, Loppnau P, Martin F, Thornton J, Thonton J, Edwards AM, Bochkarev A, Plotnikov AN, Vedadi M, Arrowsmith CH. Structural and chemical profiling of the human cytosolic sulfotransferases. Plos Biology. 5: e97. PMID 17425406 DOI: 10.1371/journal.pbio.0050097 |
0.684 |
|
| 2007 |
Tress ML, Martelli PL, Frankish A, Reeves GA, Wesselink JJ, Yeats C, Olason PI, Albrecht M, Hegyi H, Giorgetti A, Raimondo D, Lagarde J, Laskowski RA, López G, Sadowski MI, ... ... Thornton JM, et al. The implications of alternative splicing in the ENCODE protein complement. Proceedings of the National Academy of Sciences of the United States of America. 104: 5495-500. PMID 17372197 DOI: 10.1073/Pnas.0700800104 |
0.77 |
|
| 2007 |
Kahraman A, Morris RJ, Laskowski RA, Thornton JM. Shape variation in protein binding pockets and their ligands. Journal of Molecular Biology. 368: 283-301. PMID 17337005 DOI: 10.1016/J.Jmb.2007.01.086 |
0.752 |
|
| 2007 |
Watson JD, Sanderson S, Ezersky A, Savchenko A, Edwards A, Orengo C, Joachimiak A, Laskowski RA, Thornton JM. Towards fully automated structure-based function prediction in structural genomics: a case study. Journal of Molecular Biology. 367: 1511-22. PMID 17316683 DOI: 10.1016/J.Jmb.2007.01.063 |
0.755 |
|
| 2007 |
Najmanovich RJ, Allali-Hassani A, Morris RJ, Dombrovsky L, Pan PW, Vedadi M, Plotnikov AN, Edwards A, Arrowsmith C, Thornton JM. Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinformatics (Oxford, England). 23: e104-9. PMID 17237076 DOI: 10.1093/Bioinformatics/Btl292 |
0.721 |
|
| 2007 |
Greene LH, Lewis TE, Addou S, Cuff A, Dallman T, Dibley M, Redfern O, Pearl F, Nambudiry R, Reid A, Sillitoe I, Yeats C, Thornton JM, Orengo CA. The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Research. 35: D291-7. PMID 17135200 DOI: 10.1093/Nar/Gkl959 |
0.4 |
|
| 2007 |
Holliday GL, Almonacid DE, Bartlett GJ, O'Boyle NM, Torrance JW, Murray-Rust P, Mitchell JB, Thornton JM. MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. Nucleic Acids Research. 35: D515-20. PMID 17082206 DOI: 10.1093/Nar/Gkl774 |
0.79 |
|
| 2007 |
Allali-Hassani A, Pan W, Dombrovski L, Najmanovich R, Tempel W, Dong A, Loppnau P, Martin F, Thornton J, Edwards A, Bochkarev A, Plotnikov A, Vedadi M, Arrowsmith C. Correction: Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases Plos Biology. 5: e165. DOI: 10.1371/Journal.Pbio.0050165 |
0.308 |
|
| 2007 |
Kahraman A, Morris RJ, Laskowski RA, Thornton JM. Variation of geometrical and physicochemical properties in protein binding pockets and their ligands Bmc Bioinformatics. 8. DOI: 10.1186/1471-2105-8-S8-S1 |
0.751 |
|
| 2006 |
McElwee JJ, Schuster E, Blanc E, Thornton J, Gems D. Erratum to "Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans" [Mech. Ageing Dev. 127 (5) (2006) 458-472]. Mechanisms of Ageing and Development. 127: 922-36. PMID 17216712 DOI: 10.1016/J.Mad.2006.10.002 |
0.642 |
|
| 2006 |
Bashton M, Nobeli I, Thornton JM. Cognate ligand domain mapping for enzymes. Journal of Molecular Biology. 364: 836-52. PMID 17034815 DOI: 10.1016/J.Jmb.2006.09.041 |
0.801 |
|
| 2006 |
Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM. Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins. Genome Biology. 7: R89. PMID 17029626 DOI: 10.1186/Gb-2006-7-10-R89 |
0.768 |
|
| 2006 |
Ranea JA, Sillero A, Thornton JM, Orengo CA. Protein superfamily evolution and the last universal common ancestor (LUCA). Journal of Molecular Evolution. 63: 513-25. PMID 17021929 DOI: 10.1007/S00239-005-0289-7 |
0.386 |
|
| 2006 |
Albeck S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, Diprose JM, Dym O, Esnouf RM, Felder C, Ferron F, ... ... Thornton JM, et al. SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallographica. Section D, Biological Crystallography. 62: 1184-95. PMID 17001095 DOI: 10.1107/S090744490602991X |
0.777 |
|
| 2006 |
Selman C, Kerrison ND, Cooray A, Piper MD, Lingard SJ, Barton RH, Schuster EF, Blanc E, Gems D, Nicholson JK, Thornton JM, Partridge L, Withers DJ. Coordinated multitissue transcriptional and plasma metabonomic profiles following acute caloric restriction in mice. Physiological Genomics. 27: 187-200. PMID 16882887 DOI: 10.1152/Physiolgenomics.00084.2006 |
0.77 |
|
| 2006 |
Reeves GA, Thornton JM. Integrating biological data through the genome. Human Molecular Genetics. 15: R81-7. PMID 16651373 DOI: 10.1093/Hmg/Ddl086 |
0.575 |
|
| 2006 |
Whamond GS, Thornton JM. An analysis of intron positions in relation to nucleotides, amino acids, and protein secondary structure. Journal of Molecular Biology. 359: 238-47. PMID 16616935 DOI: 10.1016/J.Jmb.2006.03.029 |
0.801 |
|
| 2006 |
Nobeli I, Thornton JM. A bioinformatician's view of the metabolome. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 534-45. PMID 16615085 DOI: 10.1002/Bies.20414 |
0.708 |
|
| 2006 |
Jones DT, Sternberg MJ, Thornton JM. Introduction. Bioinformatics: from molecules to systems. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 389-91. PMID 16524827 DOI: 10.1098/Rstb.2005.1811 |
0.578 |
|
| 2006 |
McElwee JJ, Schuster E, Blanc E, Thornton J, Gems D. Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans. Mechanisms of Ageing and Development. 127: 458-72. PMID 16522328 DOI: 10.1016/J.Mad.2006.01.006 |
0.641 |
|
| 2006 |
Stockwell GR, Thornton JM. Conformational diversity of ligands bound to proteins. Journal of Molecular Biology. 356: 928-44. PMID 16405908 DOI: 10.1016/J.Jmb.2005.12.012 |
0.778 |
|
| 2006 |
Glaser F, Morris RJ, Najmanovich RJ, Laskowski RA, Thornton JM. A method for localizing ligand binding pockets in protein structures. Proteins. 62: 479-88. PMID 16304646 DOI: 10.1002/Prot.20769 |
0.811 |
|
| 2006 |
Furey W, Cowtan KD, Zhang KYJ, Main P, Brunger AT, Adams PD, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang J-, Pannu NS, Read RJ, Rice LM, Simonson T, Tronrud DE, ... ... Thornton JM, et al. Programs and program systems in wide use International Tables For Crystallography. 695-743. DOI: 10.1107/97809553602060000724 |
0.301 |
|
| 2005 |
Gutteridge A, Thornton JM. Understanding nature's catalytic toolkit. Trends in Biochemical Sciences. 30: 622-9. PMID 16214343 DOI: 10.1016/J.Tibs.2005.09.006 |
0.713 |
|
| 2005 |
Holliday GL, Bartlett GJ, Almonacid DE, O'Boyle NM, Murray-Rust P, Thornton JM, Mitchell JB. MACiE: a database of enzyme reaction mechanisms. Bioinformatics (Oxford, England). 21: 4315-6. PMID 16188925 DOI: 10.1093/Bioinformatics/Bti693 |
0.787 |
|
| 2005 |
George RA, Spriggs RV, Bartlett GJ, Gutteridge A, MacArthur MW, Porter CT, Al-Lazikani B, Thornton JM, Swindells MB. Effective function annotation through catalytic residue conservation. Proceedings of the National Academy of Sciences of the United States of America. 102: 12299-304. PMID 16037208 DOI: 10.1073/Pnas.0504833102 |
0.822 |
|
| 2005 |
Ferrer-Costa C, Shanahan HP, Jones S, Thornton JM. HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. Bioinformatics (Oxford, England). 21: 3679-80. PMID 16030074 DOI: 10.1093/Bioinformatics/Bti575 |
0.767 |
|
| 2005 |
Laskowski RA, Watson JD, Thornton JM. Protein function prediction using local 3D templates. Journal of Molecular Biology. 351: 614-26. PMID 16019027 DOI: 10.1016/J.Jmb.2005.05.067 |
0.757 |
|
| 2005 |
Najmanovich RJ, Torrance JW, Thornton JM. Prediction of protein function from structure: insights from methods for the detection of local structural similarities. Biotechniques. 38: 847, 849, 851. PMID 16018542 DOI: 10.2144/05386Te01 |
0.763 |
|
| 2005 |
Freilich S, Massingham T, Bhattacharyya S, Ponsting H, Lyons PA, Freeman TC, Thornton JM. Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins. Genome Biology. 6: R56. PMID 15998445 DOI: 10.1186/Gb-2005-6-7-R56 |
0.807 |
|
| 2005 |
Laskowski RA, Watson JD, Thornton JM. ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Research. 33: W89-93. PMID 15980588 DOI: 10.1093/Nar/Gki414 |
0.764 |
|
| 2005 |
Watson JD, Laskowski RA, Thornton JM. Predicting protein function from sequence and structural data. Current Opinion in Structural Biology. 15: 275-84. PMID 15963890 DOI: 10.1016/J.Sbi.2005.04.003 |
0.75 |
|
| 2005 |
Orengo CA, Thornton JM. Protein families and their evolution-a structural perspective. Annual Review of Biochemistry. 74: 867-900. PMID 15954844 DOI: 10.1146/Annurev.Biochem.74.082803.133029 |
0.365 |
|
| 2005 |
Shanahan HP, Thornton JM. Amino acid architecture and the distribution of polar atoms on the surfaces of proteins. Biopolymers. 78: 318-28. PMID 15898105 DOI: 10.1002/Bip.20295 |
0.624 |
|
| 2005 |
Freilich S, Spriggs RV, George RA, Al-Lazikani B, Swindells M, Thornton JM. The complement of enzymatic sets in different species. Journal of Molecular Biology. 349: 745-63. PMID 15896806 DOI: 10.1016/J.Jmb.2005.04.027 |
0.804 |
|
| 2005 |
Ponstingl H, Kabir T, Gorse D, Thornton JM. Morphological aspects of oligomeric protein structures. Progress in Biophysics and Molecular Biology. 89: 9-35. PMID 15895504 DOI: 10.1016/J.Pbiomolbio.2004.07.010 |
0.668 |
|
| 2005 |
Todd AE, Marsden RL, Thornton JM, Orengo CA. Progress of structural genomics initiatives: an analysis of solved target structures. Journal of Molecular Biology. 348: 1235-60. PMID 15854658 DOI: 10.1016/J.Jmb.2005.03.037 |
0.429 |
|
| 2005 |
Pellegrini-Calace M, Thornton JM. Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure information. Nucleic Acids Research. 33: 2129-40. PMID 15831786 DOI: 10.1093/Nar/Gki349 |
0.796 |
|
| 2005 |
Torrance JW, Bartlett GJ, Porter CT, Thornton JM. Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families. Journal of Molecular Biology. 347: 565-81. PMID 15755451 DOI: 10.1016/J.Jmb.2005.01.044 |
0.73 |
|
| 2005 |
Nobeli I, Spriggs RV, George RA, Thornton JM. A ligand-centric analysis of the diversity and evolution of protein-ligand relationships in E.coli. Journal of Molecular Biology. 347: 415-36. PMID 15740750 DOI: 10.1016/J.Jmb.2005.01.061 |
0.837 |
|
| 2005 |
Morris RJ, Najmanovich RJ, Kahraman A, Thornton JM. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinformatics (Oxford, England). 21: 2347-55. PMID 15728116 DOI: 10.1093/Bioinformatics/Bti337 |
0.802 |
|
| 2005 |
Gutteridge A, Thornton J. Conformational changes observed in enzyme crystal structures upon substrate binding. Journal of Molecular Biology. 346: 21-8. PMID 15663924 DOI: 10.1016/J.Jmb.2004.11.013 |
0.711 |
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| 2005 |
Brooksbank C, Cameron G, Thornton J. The European Bioinformatics Institute's data resources: towards systems biology. Nucleic Acids Research. 33: D46-53. PMID 15608238 DOI: 10.1093/Nar/Gki026 |
0.304 |
|
| 2005 |
Laskowski RA, Chistyakov VV, Thornton JM. PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Research. 33: D266-8. PMID 15608193 DOI: 10.1093/Nar/Gki001 |
0.7 |
|
| 2005 |
Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, ... ... Thornton J, et al. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Research. 33: D247-51. PMID 15608188 DOI: 10.1093/Nar/Gki024 |
0.604 |
|
| 2005 |
Kerrison ND, Selman C, Lingard SJ, Thornton JM, Partridge L, Withers DJ. Living longer by dieting: analysis of transcriptional response after caloric restriction Bmc Bioinformatics. 6: S6. DOI: 10.1186/1471-2105-6-S3-S6 |
0.671 |
|
| 2005 |
Morris RJ, Kahraman A, Thornton JM. Binding pocket shape analysis for protein function prediction Acta Crystallographica Section a Foundations of Crystallography. 61: c156-c157. DOI: 10.1107/S0108767305093347 |
0.648 |
|
| 2005 |
Joachimiak A, Zhang R, Kim Y, Osipiuk J, Cuff M, Chang C, Nocek B, Binkowski A, Cymborowski M, Lazarski K, Chruszcz M, Laskowski R, Thornton J, Duke N, Rotella F, et al. Establishing high-throughput protein structure determination pipeline for structural genomics Acta Crystallographica Section a Foundations of Crystallography. 61: c259-c259. DOI: 10.1107/S0108767305088926 |
0.696 |
|
| 2005 |
Todd AE, Marsden RL, Thornton JM, Orengo CA. Corrigendum to “Progress of Structural Genomics Initiatives: An Analysis of Solved Target Structures” [J. Mol. Biol. (2005) 348, 1235–1260] Journal of Molecular Biology. 353: 760. DOI: 10.1016/J.Jmb.2005.09.001 |
0.302 |
|
| 2004 |
Eyre TA, Partridge L, Thornton JM. Computational analysis of alpha-helical membrane protein structure: implications for the prediction of 3D structural models. Protein Engineering, Design & Selection : Peds. 17: 613-24. PMID 15388845 DOI: 10.1093/Protein/Gzh072 |
0.384 |
|
| 2004 |
Shanahan HP, Garcia MA, Jones S, Thornton JM. Identifying DNA-binding proteins using structural motifs and the electrostatic potential. Nucleic Acids Research. 32: 4732-41. PMID 15356290 DOI: 10.1093/Nar/Gkh803 |
0.771 |
|
| 2004 |
Murray KB, Taylor WR, Thornton JM. Toward the detection and validation of repeats in protein structure. Proteins. 57: 365-80. PMID 15340924 DOI: 10.1002/Prot.20202 |
0.539 |
|
| 2004 |
Macchiarulo A, Nobeli I, Thornton JM. Ligand selectivity and competition between enzymes in silico. Nature Biotechnology. 22: 1039-45. PMID 15286657 DOI: 10.1038/Nbt999 |
0.799 |
|
| 2004 |
George RA, Spriggs RV, Thornton JM, Al-Lazikani B, Swindells MB. SCOPEC: a database of protein catalytic domains. Bioinformatics (Oxford, England). 20: i130-6. PMID 15262791 DOI: 10.1093/bioinformatics/bth948 |
0.815 |
|
| 2004 |
Bray JE, Marsden RL, Rison SC, Savchenko A, Edwards AM, Thornton JM, Orengo CA. A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics (Oxford, England). 20: 2288-95. PMID 15201178 DOI: 10.1093/Bioinformatics/Bth240 |
0.357 |
|
| 2004 |
Gutteridge A, Thornton J. Conformational change in substrate binding, catalysis and product release: an open and shut case? Febs Letters. 567: 67-73. PMID 15165895 DOI: 10.1016/J.Febslet.2004.03.067 |
0.697 |
|
| 2004 |
Ranea JA, Buchan DW, Thornton JM, Orengo CA. Evolution of protein superfamilies and bacterial genome size. Journal of Molecular Biology. 336: 871-87. PMID 15095866 DOI: 10.1016/J.Jmb.2003.12.044 |
0.318 |
|
| 2004 |
Shanahan HP, Thornton JM. An examination of the conservation of surface patch polarity for proteins. Bioinformatics (Oxford, England). 20: 2197-204. PMID 15073014 DOI: 10.1093/Bioinformatics/Bth218 |
0.651 |
|
| 2004 |
Jones S, Thornton JM. Searching for functional sites in protein structures. Current Opinion in Chemical Biology. 8: 3-7. PMID 15036149 DOI: 10.1016/J.Cbpa.2003.11.001 |
0.687 |
|
| 2004 |
Porter CT, Bartlett GJ, Thornton JM. The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Research. 32: D129-33. PMID 14681376 DOI: 10.1093/Nar/Gkh028 |
0.611 |
|
| 2004 |
Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C. Recognizing the fold of a protein structure. Bioinformatics (Oxford, England). 19: 1748-59. PMID 14512345 DOI: 10.1093/Bioinformatics/Btg240 |
0.425 |
|
| 2003 |
Jones S, Thornton JM. Protein-DNA interactions: the story so far and a new method for prediction. Comparative and Functional Genomics. 4: 428-31. PMID 18629075 DOI: 10.1002/Cfg.303 |
0.667 |
|
| 2003 |
Jones S, Shanahan HP, Berman HM, Thornton JM. Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Research. 31: 7189-98. PMID 14654694 DOI: 10.1093/Nar/Gkg922 |
0.744 |
|
| 2003 |
Laskowski RA, Watson JD, Thornton JM. From protein structure to biochemical function? Journal of Structural and Functional Genomics. 4: 167-77. PMID 14649301 DOI: 10.1023/A:1026127927612 |
0.749 |
|
| 2003 |
Nobeli I, Ponstingl H, Krissinel EB, Thornton JM. A structure-based anatomy of the E.coli metabolome. Journal of Molecular Biology. 334: 697-719. PMID 14636597 DOI: 10.1016/J.Jmb.2003.10.008 |
0.799 |
|
| 2003 |
Barker JA, Thornton JM. An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. Bioinformatics (Oxford, England). 19: 1644-9. PMID 12967960 DOI: 10.1093/Bioinformatics/Btg226 |
0.395 |
|
| 2003 |
Steward RE, MacArthur MW, Laskowski RA, Thornton JM. Molecular basis of inherited diseases: a structural perspective. Trends in Genetics : Tig. 19: 505-13. PMID 12957544 DOI: 10.1016/S0168-9525(03)00195-1 |
0.808 |
|
| 2003 |
Simeonidis E, Rison SC, Thornton JM, Bogle ID, Papageorgiou LG. Analysis of metabolic networks using a pathway distance metric through linear programming. Metabolic Engineering. 5: 211-9. PMID 12948755 DOI: 10.1016/S1096-7176(03)00043-0 |
0.315 |
|
| 2003 |
Bartlett GJ, Borkakoti N, Thornton JM. Catalysing new reactions during evolution: economy of residues and mechanism. Journal of Molecular Biology. 331: 829-60. PMID 12909013 DOI: 10.1016/S0022-2836(03)00734-4 |
0.417 |
|
| 2003 |
Watson JD, Todd AE, Bray J, Laskowski RA, Edwards A, Joachimiak A, Orengo CA, Thornton JM. Target selection and determination of function in structural genomics. Iubmb Life. 55: 249-55. PMID 12880206 DOI: 10.1080/1521654031000123385 |
0.751 |
|
| 2003 |
Dawe JH, Porter CT, Thornton JM, Tabor AB. A template search reveals mechanistic similarities and differences in beta-ketoacyl synthases (KAS) and related enzymes. Proteins. 52: 427-35. PMID 12866053 DOI: 10.1002/Prot.10421 |
0.59 |
|
| 2003 |
Nooren IM, Thornton JM. Diversity of protein-protein interactions. The Embo Journal. 22: 3486-92. PMID 12853464 DOI: 10.1093/Emboj/Cdg359 |
0.417 |
|
| 2003 |
Gutteridge A, Bartlett GJ, Thornton JM. Using a neural network and spatial clustering to predict the location of active sites in enzymes. Journal of Molecular Biology. 330: 719-34. PMID 12850142 DOI: 10.1016/S0022-2836(03)00515-1 |
0.707 |
|
| 2003 |
Jones S, Barker JA, Nobeli I, Thornton JM. Using structural motif templates to identify proteins with DNA binding function. Nucleic Acids Research. 31: 2811-23. PMID 12771208 DOI: 10.1093/Nar/Gkg386 |
0.81 |
|
| 2003 |
Sanishvili R, Yakunin AF, Laskowski RA, Skarina T, Evdokimova E, Doherty-Kirby A, Lajoie GA, Thornton JM, Arrowsmith CH, Savchenko A, Joachimiak A, Edwards AM. Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli. The Journal of Biological Chemistry. 278: 26039-45. PMID 12732651 DOI: 10.1074/Jbc.M303867200 |
0.721 |
|
| 2003 |
Bartlett GJ, Todd AE, Thornton JM. Inferring protein function from structure. Methods of Biochemical Analysis. 44: 387-407. PMID 12647396 DOI: 10.1002/0471721204.Ch19 |
0.427 |
|
| 2003 |
Orengo CA, Pearl FM, Thornton JM. The CATH domain structure database. Methods of Biochemical Analysis. 44: 249-71. PMID 12647390 DOI: 10.1002/0471721204.Ch13 |
0.332 |
|
| 2003 |
Nooren IM, Thornton JM. Structural characterisation and functional significance of transient protein-protein interactions. Journal of Molecular Biology. 325: 991-1018. PMID 12527304 DOI: 10.1016/S0022-2836(02)01281-0 |
0.394 |
|
| 2003 |
Buchan DW, Rison SC, Bray JE, Lee D, Pearl F, Thornton JM, Orengo CA. Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Research. 31: 469-73. PMID 12520054 DOI: 10.1093/Nar/Gkg051 |
0.389 |
|
| 2003 |
Pearl FMG, Bennett CF, Bray JE, Harrison AP, Martin N, Shepherd A, Sillitoe I, Thornton J, Orengo CA. The CATH database: An extended protein family resource for structural and functional genomics Nucleic Acids Research. 31: 452-455. PMID 12520050 DOI: 10.1093/Nar/Gkg062 |
0.387 |
|
| 2003 |
Shepherd AJ, Gorse D, Thornton JM. A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks. Proteins. 50: 290-302. PMID 12486723 DOI: 10.1002/Prot.10290 |
0.349 |
|
| 2003 |
Ponstingl H, Kabir T, Thornton JM. Automatic inference of protein quaternary structure from crystals Journal of Applied Crystallography. 36: 1116-1122. DOI: 10.1107/S0021889803012421 |
0.664 |
|
| 2002 |
Bartlett GJ, Porter CT, Borkakoti N, Thornton JM. Analysis of catalytic residues in enzyme active sites. Journal of Molecular Biology. 324: 105-21. PMID 12421562 DOI: 10.1016/S0022-2836(02)01036-7 |
0.614 |
|
| 2002 |
Harrison A, Pearl F, Mott R, Thornton J, Orengo C. Quantifying the similarities within fold space. Journal of Molecular Biology. 323: 909-26. PMID 12417203 DOI: 10.1016/S0022-2836(02)00992-0 |
0.348 |
|
| 2002 |
Todd AE, Orengo CA, Thornton JM. Sequence and structural differences between enzyme and nonenzyme homologs. Structure (London, England : 1993). 10: 1435-51. PMID 12377129 DOI: 10.1016/S0969-2126(02)00861-4 |
0.417 |
|
| 2002 |
Nagano N, Orengo CA, Thornton JM. One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. Journal of Molecular Biology. 321: 741-65. PMID 12206759 DOI: 10.1016/S0022-2836(02)00649-6 |
0.461 |
|
| 2002 |
de la Cruz X, Hutchinson EG, Shepherd A, Thornton JM. Toward predicting protein topology: an approach to identifying beta hairpins. Proceedings of the National Academy of Sciences of the United States of America. 99: 11157-62. PMID 12177429 DOI: 10.1073/Pnas.162376199 |
0.34 |
|
| 2002 |
Todd AE, Orengo CA, Thornton JM. Plasticity of enzyme active sites. Trends in Biochemical Sciences. 27: 419-26. PMID 12151227 DOI: 10.1016/S0968-0004(02)02158-8 |
0.369 |
|
| 2002 |
Rison SC, Thornton JM. Pathway evolution, structurally speaking. Current Opinion in Structural Biology. 12: 374-82. PMID 12127458 DOI: 10.1016/S0959-440X(02)00331-7 |
0.362 |
|
| 2002 |
Luscombe NM, Thornton JM. Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity. Journal of Molecular Biology. 320: 991-1009. PMID 12126620 DOI: 10.1016/S0022-2836(02)00571-5 |
0.363 |
|
| 2002 |
Steward RE, Thornton JM. Prediction of strand pairing in antiparallel and parallel beta-sheets using information theory. Proteins. 48: 178-91. PMID 12112687 DOI: 10.1002/Prot.10152 |
0.538 |
|
| 2002 |
Rison SC, Teichmann SA, Thornton JM. Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli. Journal of Molecular Biology. 318: 911-32. PMID 12054833 DOI: 10.1016/S0022-2836(02)00140-7 |
0.56 |
|
| 2002 |
Buchan DW, Shepherd AJ, Lee D, Pearl FM, Rison SC, Thornton JM, Orengo CA. Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database. Genome Research. 12: 503-14. PMID 11875040 DOI: 10.1101/Gr.213802 |
0.39 |
|
| 2002 |
Murray KB, Gorse D, Thornton JM. Wavelet transforms for the characterization and detection of repeating motifs. Journal of Molecular Biology. 316: 341-63. PMID 11851343 DOI: 10.1006/Jmbi.2001.5332 |
0.557 |
|
| 2002 |
Martin AC, Facchiano AM, Cuff AL, Hernandez-Boussard T, Olivier M, Hainaut P, Thornton JM. Integrating mutation data and structural analysis of the TP53 tumor-suppressor protein. Human Mutation. 19: 149-64. PMID 11793474 DOI: 10.1002/Humu.10032 |
0.342 |
|
| 2002 |
Orengo CA, Bray JE, Buchan DW, Harrison A, Lee D, Pearl FM, Sillitoe I, Todd AE, Thornton JM. The CATH protein family database: a resource for structural and functional annotation of genomes. Proteomics. 2: 11-21. PMID 11788987 DOI: 10.1002/1615-9861(200201)2:1<11::Aid-Prot11>3.0.Co;2-T |
0.443 |
|
| 2002 |
Gilbert D, Westhead D, Viksna J, Thornton J. A computer system to perform structure comparison using TOPS representations of protein structure. Computers & Chemistry. 26: 23-30. PMID 11765848 DOI: 10.1016/S0097-8485(01)00096-1 |
0.439 |
|
| 2002 |
Thornton J, Laskowski RA, Bartlett G, Porter C, Todd A, Orengo C. Enzymes: evolution of function from a structural perspective Acta Crystallographica Section a Foundations of Crystallography. 58: c13-c13. DOI: 10.1107/S0108767302085616 |
0.752 |
|
| 2001 |
Nagano N, Porter CT, Thornton JM. The (betaalpha)(8) glycosidases: sequence and structure analyses suggest distant evolutionary relationships. Protein Engineering. 14: 845-55. PMID 11742103 DOI: 10.1093/Protein/14.11.845 |
0.553 |
|
| 2001 |
Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C. Small-molecule metabolism: an enzyme mosaic. Trends in Biotechnology. 19: 482-6. PMID 11711174 DOI: 10.1016/S0167-7799(01)01813-3 |
0.694 |
|
| 2001 |
Nobeli I, Laskowski RA, Valdar WS, Thornton JM. On the molecular discrimination between adenine and guanine by proteins. Nucleic Acids Research. 29: 4294-309. PMID 11691917 DOI: 10.1093/Nar/29.21.4294 |
0.819 |
|
| 2001 |
Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C. The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli. Journal of Molecular Biology. 311: 693-708. PMID 11518524 DOI: 10.1006/Jmbi.2001.4912 |
0.708 |
|
| 2001 |
Luscombe NM, Laskowski RA, Thornton JM. Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Research. 29: 2860-74. PMID 11433033 DOI: 10.1093/Nar/29.13.2860 |
0.663 |
|
| 2001 |
Thornton JM. From genome to function. Science (New York, N.Y.). 292: 2095-7. PMID 11408660 DOI: 10.1126/Science.292.5524.2095 |
0.399 |
|
| 2001 |
Thornton J. Structural genomics takes off. Trends in Biochemical Sciences. 26: 88-9. PMID 11327043 DOI: 10.1016/S0968-0004(00)01765-5 |
0.315 |
|
| 2001 |
Todd AE, Orengo CA, Thornton JM. Evolution of function in protein superfamilies, from a structural perspective. Journal of Molecular Biology. 307: 1113-43. PMID 11286560 DOI: 10.1006/Jmbi.2001.4513 |
0.485 |
|
| 2001 |
Thornton JM. The Hans Neurath Award lecture of The Protein Society: proteins-- a testament to physics, chemistry, and evolution. Protein Science : a Publication of the Protein Society. 10: 3-11. PMID 11266588 DOI: 10.1110/Ps.90001 |
0.429 |
|
| 2001 |
Jones S, Daley DT, Luscombe NM, Berman HM, Thornton JM. Protein-RNA interactions: a structural analysis. Nucleic Acids Research. 29: 943-54. PMID 11160927 DOI: 10.1093/Nar/29.4.943 |
0.641 |
|
| 2001 |
Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA. A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Research. 29: 223-7. PMID 11125098 DOI: 10.1093/Nar/29.1.223 |
0.622 |
|
| 2001 |
Valdar WS, Thornton JM. Protein-protein interfaces: analysis of amino acid conservation in homodimers. Proteins. 42: 108-24. PMID 11093265 DOI: 10.1002/1097-0134(20010101)42:1<108::Aid-Prot110>3.0.Co;2-O |
0.417 |
|
| 2000 |
Luscombe NM, Austin SE, Berman HM, Thornton JM. An overview of the structures of protein-DNA complexes. Genome Biology. 1: REVIEWS001. PMID 11104519 DOI: 10.1186/Gb-2000-1-1-Reviews001 |
0.41 |
|
| 2000 |
Thornton JM, Todd AE, Milburn D, Borkakoti N, Orengo CA. From structure to function: approaches and limitations. Nature Structural Biology. 7: 991-4. PMID 11104008 DOI: 10.1038/80784 |
0.433 |
|
| 2000 |
Ponstingl H, Henrick K, Thornton JM. Discriminating between homodimeric and monomeric proteins in the crystalline state. Proteins. 41: 47-57. PMID 10944393 DOI: 10.1002/1097-0134(20001001)41:1<47::Aid-Prot80>3.0.Co;2-8 |
0.61 |
|
| 2000 |
Pearl F, Todd AE, Bray JE, Martin AC, Salamov AA, Suwa M, Swindells MB, Thornton JM, Orengo CA. Using the CATH domain database to assign structures and functions to the genome sequences. Biochemical Society Transactions. 28: 269-75. PMID 10816141 DOI: 10.1042/Bst0280269 |
0.428 |
|
| 2000 |
Bray JE, Todd AE, Pearl FM, Thornton JM, Orengo CA. The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues. Protein Engineering. 13: 153-65. PMID 10775657 DOI: 10.1093/Protein/13.3.153 |
0.484 |
|
| 2000 |
Taroni C, Jones S, Thornton JM. Analysis and prediction of carbohydrate binding sites. Protein Engineering. 13: 89-98. PMID 10708647 DOI: 10.1093/Protein/13.2.89 |
0.632 |
|
| 2000 |
Jones S, Marin A, Thornton JM. Protein domain interfaces: characterization and comparison with oligomeric protein interfaces. Protein Engineering. 13: 77-82. PMID 10708645 DOI: 10.1093/Protein/13.2.77 |
0.633 |
|
| 2000 |
Pearl FM, Lee D, Bray JE, Sillitoe I, Todd AE, Harrison AP, Thornton JM, Orengo CA. Assigning genomic sequences to CATH. Nucleic Acids Research. 28: 277-82. PMID 10592246 DOI: 10.1093/Nar/28.1.277 |
0.437 |
|
| 2000 |
Thornton J. THE EVOLUTION OF ENZYME STRUCTURE AND FUNCTION Biochemical Society Transactions. 28: A53-A53. DOI: 10.1042/Bst028A053 |
0.386 |
|
| 2000 |
Orengo CA, Pearl F, Bray J, Todd A, Thornton JM. Functional Insights from Structural Families Biochemical Society Transactions. 28: 22. DOI: 10.1042/Bst028A022C |
0.313 |
|
| 1999 |
Nagano N, Hutchinson EG, Thornton JM. Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels. Protein Science : a Publication of the Protein Society. 8: 2072-84. PMID 10548053 DOI: 10.1110/Ps.8.10.2072 |
0.377 |
|
| 1999 |
Thornton JM, Orengo CA, Todd AE, Pearl FM. Protein folds, functions and evolution. Journal of Molecular Biology. 293: 333-42. PMID 10529349 DOI: 10.1006/Jmbi.1999.3054 |
0.453 |
|
| 1999 |
Todd AE, Orengo CA, Thornton JM. Evolution of protein function, from a structural perspective. Current Opinion in Chemical Biology. 3: 548-56. PMID 10508675 DOI: 10.1016/S1367-5931(99)00007-1 |
0.45 |
|
| 1999 |
Orengo CA, Todd AE, Thornton JM. From protein structure to function. Current Opinion in Structural Biology. 9: 374-82. PMID 10361094 DOI: 10.1016/S0959-440X(99)80051-7 |
0.421 |
|
| 1999 |
Todd AE, Orengo CA, Thornton JM. DOMPLOT: a program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts. Protein Engineering. 12: 375-9. PMID 10360977 DOI: 10.1093/Protein/12.5.375 |
0.398 |
|
| 1999 |
Gilbert D, Westhead D, Nagano N, Thornton J. Motif-based searching in TOPS protein topology databases. Bioinformatics (Oxford, England). 15: 317-26. PMID 10320400 DOI: 10.1093/Bioinformatics/15.4.317 |
0.435 |
|
| 1999 |
Harding SE, Horton JC, Jones S, Thornton JM, Winzor DJ. COVOL: an interactive program for evaluating second virial coefficients from the triaxial shape or dimensions of rigid macromolecules. Biophysical Journal. 76: 2432-8. PMID 10233060 DOI: 10.1016/S0006-3495(99)77398-4 |
0.563 |
|
| 1999 |
Salem GM, Hutchinson EG, Orengo CA, Thornton JM. Correlation of observed fold frequency with the occurrence of local structural motifs. Journal of Molecular Biology. 287: 969-81. PMID 10222204 DOI: 10.1006/Jmbi.1999.2642 |
0.336 |
|
| 1999 |
Jones S, van Heyningen P, Berman HM, Thornton JM. Protein-DNA interactions: A structural analysis. Journal of Molecular Biology. 287: 877-96. PMID 10222198 DOI: 10.1006/Jmbi.1999.2659 |
0.635 |
|
| 1999 |
MacArthur MW, Thornton JM. Protein side-chain conformation: a systematic variation of chi 1 mean values with resolution - a consequence of multiple rotameric states? Acta Crystallographica. Section D, Biological Crystallography. 55: 994-1004. PMID 10216296 DOI: 10.1107/S0907444999002231 |
0.672 |
|
| 1999 |
Westhead DR, Slidel TW, Flores TP, Thornton JM. Protein structural topology: Automated analysis and diagrammatic representation. Protein Science : a Publication of the Protein Society. 8: 897-904. PMID 10211836 DOI: 10.1110/Ps.8.4.897 |
0.429 |
|
| 1999 |
de la Cruz X, Thornton JM. Factors limiting the performance of prediction-based fold recognition methods. Protein Science : a Publication of the Protein Society. 8: 750-9. PMID 10211821 DOI: 10.1110/Ps.8.4.750 |
0.334 |
|
| 1999 |
Gardner S, Thornton J. Iditis: protein structure database. Acta Crystallographica. Section D, Biological Crystallography. 54: 1071-7. PMID 10089482 DOI: 10.1107/S0907444998007112 |
0.443 |
|
| 1999 |
Kasuya A, Thornton JM. Three-dimensional structure analysis of PROSITE patterns. Journal of Molecular Biology. 286: 1673-91. PMID 10064723 DOI: 10.1006/Jmbi.1999.2581 |
0.336 |
|
| 1999 |
Orengo CA, Pearl FM, Bray JE, Todd AE, Martin AC, Lo Conte L, Thornton JM. The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Research. 27: 275-9. PMID 9847200 DOI: 10.1093/Nar/27.1.275 |
0.471 |
|
| 1999 |
Mitchell JBO, Laskowski RA, Alex A, Forster MJ, Thornton JM. BLEEP?potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data Journal of Computational Chemistry. 20: 1177-1185. DOI: 10.1002/(Sici)1096-987X(199908)20:11<1177::Aid-Jcc8>3.0.Co;2-0 |
0.651 |
|
| 1999 |
Mitchell JBO, Laskowski RA, Alex A, Thornton JM. BLEEP—potential of mean force describing protein–ligand interactions: I. Generating potential Journal of Computational Chemistry. 20: 1165-1176. DOI: 10.1002/(Sici)1096-987X(199908)20:11<1165::Aid-Jcc7>3.0.Co;2-A |
0.327 |
|
| 1998 |
Orengo CA, Martin AM, Hutchinson G, Jones S, Jones DT, Michie AD, Swindells MB, Thornton JM. Classifying a protein in the CATH database of domain structures. Acta Crystallographica. Section D, Biological Crystallography. 54: 1155-67. PMID 10089492 DOI: 10.1107/S0907444998007501 |
0.673 |
|
| 1998 |
Luscombe NM, Laskowski RA, Westhead DR, Milburn D, Jones S, Karmirantzou M, Thornton JM. New tools and resources for analysing protein structures and their interactions. Acta Crystallographica. Section D, Biological Crystallography. 54: 1132-8. PMID 10089489 DOI: 10.1107/S0907444998007318 |
0.801 |
|
| 1998 |
Swindells MB, Orengo CA, Jones DT, Hutchinson EG, Thornton JM. Contemporary approaches to protein structure classification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 20: 884-91. PMID 9872054 DOI: 10.1002/(Sici)1521-1878(199811)20:11<884::Aid-Bies3>3.0.Co;2-H |
0.458 |
|
| 1998 |
Milburn D, Laskowski RA, Thornton JM. Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis. Protein Engineering. 11: 855-9. PMID 9862203 DOI: 10.1093/Protein/11.10.855 |
0.706 |
|
| 1998 |
Hutchinson EG, Sessions RB, Thornton JM, Woolfson DN. Determinants of strand register in antiparallel beta-sheets of proteins. Protein Science : a Publication of the Protein Society. 7: 2287-300. PMID 9827995 DOI: 10.1002/Pro.5560071106 |
0.313 |
|
| 1998 |
Laskowski RA, MacArthur MW, Thornton JM. Validation of protein models derived from experiment. Current Opinion in Structural Biology. 8: 631-9. PMID 9818269 DOI: 10.1016/S0959-440X(98)80156-5 |
0.782 |
|
| 1998 |
Henrick K, Thornton JM. PQS: a protein quaternary structure file server. Trends in Biochemical Sciences. 23: 358-61. PMID 9787643 DOI: 10.1016/S0968-0004(98)01253-5 |
0.303 |
|
| 1998 |
Westhead DR, Thornton JM. Protein structure prediction. Current Opinion in Biotechnology. 9: 383-9. PMID 9751638 DOI: 10.1016/S0958-1669(98)80012-8 |
0.406 |
|
| 1998 |
Zuccotto F, Martin AC, Laskowski RA, Thornton JM, Gilbert IH. Dihydrofolate reductase: a potential drug target in trypanosomes and leishmania. Journal of Computer-Aided Molecular Design. 12: 241-57. PMID 9749368 DOI: 10.1023/A:1016085005275 |
0.66 |
|
| 1998 |
Bloch C, Patel SU, Baud F, Zvelebil MJ, Carr MD, Sadler PJ, Thornton JM. 1H NMR structure of an antifungal gamma-thionin protein SIalpha1: similarity to scorpion toxins. Proteins. 32: 334-49. PMID 9715910 DOI: 10.1002/(Sici)1097-0134(19980815)32:3<334::Aid-Prot9>3.0.Co;2-H |
0.398 |
|
| 1998 |
Martin AC, Orengo CA, Hutchinson EG, Jones S, Karmirantzou M, Laskowski RA, Mitchell JB, Taroni C, Thornton JM. Protein folds and functions. Structure (London, England : 1993). 6: 875-84. PMID 9687369 DOI: 10.1016/S0969-2126(98)00089-6 |
0.805 |
|
| 1998 |
Hubbard SJ, Beynon RJ, Thornton JM. Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures. Protein Engineering. 11: 349-59. PMID 9681867 DOI: 10.1093/Protein/11.5.349 |
0.385 |
|
| 1998 |
Jones S, Stewart M, Michie A, Swindells MB, Orengo C, Thornton JM. Domain assignment for protein structures using a consensus approach: characterization and analysis. Protein Science : a Publication of the Protein Society. 7: 233-42. PMID 9521098 DOI: 10.1002/Pro.5560070202 |
0.638 |
|
| 1998 |
Smith GP, Patel SU, Windass JD, Thornton JM, Winter G, Griffiths AD. Small binding proteins selected from a combinatorial repertoire of knottins displayed on phage. Journal of Molecular Biology. 277: 317-32. PMID 9514763 DOI: 10.1006/Jmbi.1997.1621 |
0.409 |
|
| 1998 |
Westhead DR, Hatton DC, Thornton JM. An atlas of protein topology cartoons available on the World-Wide Web. Trends in Biochemical Sciences. 23: 35-6. PMID 9478134 DOI: 10.1016/S0968-0004(97)01161-4 |
0.359 |
|
| 1998 |
Patel SU, Osborn R, Rees S, Thornton JM. Structural studies of Impatiens balsamina antimicrobial protein (Ib-AMP1). Biochemistry. 37: 983-90. PMID 9454588 DOI: 10.1021/Bi971747D |
0.348 |
|
| 1997 |
Martin AC, MacArthur MW, Thornton JM. Assessment of comparative modeling in CASP2. Proteins. 14-28. PMID 9485491 DOI: 10.1002/(Sici)1097-0134(1997)1+<14::Aid-Prot4>3.0.Co;2-O |
0.675 |
|
| 1997 |
Laskowski RA, Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM. PDBsum: a Web-based database of summaries and analyses of all PDB structures. Trends in Biochemical Sciences. 22: 488-90. PMID 9433130 DOI: 10.1016/S0968-0004(97)01140-7 |
0.675 |
|
| 1997 |
Williams MA, Thornton JM, Goodfellow JM. Modelling protein unfolding: hen egg-white lysozyme. Protein Engineering. 10: 895-903. PMID 9415439 DOI: 10.1093/Protein/10.8.895 |
0.408 |
|
| 1997 |
Luscombe NM, Laskowski RA, Thornton JM. NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions. Nucleic Acids Research. 25: 4940-5. PMID 9396800 DOI: 10.1093/Nar/25.24.4940 |
0.69 |
|
| 1997 |
Wallace AC, Borkakoti N, Thornton JM. TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites. Protein Science : a Publication of the Protein Society. 6: 2308-23. PMID 9385633 DOI: 10.1002/Pro.5560061104 |
0.431 |
|
| 1997 |
Mitchell JB, Laskowski RA, Thornton JM. Non-randomness in side-chain packing: the distribution of interplanar angles. Proteins. 29: 370-80. PMID 9365991 DOI: 10.1002/(Sici)1097-0134(199711)29:3<370::Aid-Prot10>3.0.Co;2-K |
0.633 |
|
| 1997 |
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM. CATH--a hierarchic classification of protein domain structures. Structure (London, England : 1993). 5: 1093-108. PMID 9309224 DOI: 10.1016/S0969-2126(97)00260-8 |
0.687 |
|
| 1997 |
Jones S, Thornton JM. Prediction of protein-protein interaction sites using patch analysis. Journal of Molecular Biology. 272: 133-43. PMID 9299343 DOI: 10.1006/Jmbi.1997.1233 |
0.666 |
|
| 1997 |
Jones S, Thornton JM. Analysis of protein-protein interaction sites using surface patches. Journal of Molecular Biology. 272: 121-32. PMID 9299342 DOI: 10.1006/Jmbi.1997.1234 |
0.63 |
|
| 1997 |
Doig AJ, MacArthur MW, Stapley BJ, Thornton JM. Structures of N-termini of helices in proteins. Protein Science : a Publication of the Protein Society. 6: 147-55. PMID 9007987 DOI: 10.1002/Pro.5560060117 |
0.638 |
|
| 1996 |
Laskowski RA, Rullmannn JA, MacArthur MW, Kaptein R, Thornton JM. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. Journal of Biomolecular Nmr. 8: 477-86. PMID 9008363 DOI: 10.1007/Bf00228148 |
0.792 |
|
| 1996 |
MacArthur MW, Thornton JM. Deviations from planarity of the peptide bond in peptides and proteins. Journal of Molecular Biology. 264: 1180-95. PMID 9000639 DOI: 10.1006/Jmbi.1996.0705 |
0.673 |
|
| 1996 |
Laskowski RA, Luscombe NM, Swindells MB, Thornton JM. Protein clefts in molecular recognition and function. Protein Science : a Publication of the Protein Society. 5: 2438-52. PMID 8976552 DOI: 10.1002/Pro.5560051206 |
0.707 |
|
| 1996 |
Viles JH, Mitchell JB, Gough SL, Doyle PM, Harris CJ, Sadler PJ, Thornton JM. Multiple solution conformations of the integrin-binding cyclic pentapeptide cyclo(-Ser-D-Leu-Asp-Val-Pro-). Analysis of the (phi, psi) space available to cyclic pentapeptides. European Journal of Biochemistry / Febs. 242: 352-62. PMID 8973654 DOI: 10.1111/J.1432-1033.1996.0352R.X |
0.352 |
|
| 1996 |
Martin AC, Thornton JM. Structural families in loops of homologous proteins: automatic classification, modelling and application to antibodies. Journal of Molecular Biology. 263: 800-15. PMID 8947577 DOI: 10.1006/Jmbi.1996.0617 |
0.386 |
|
| 1996 |
Moodie SL, Mitchell JB, Thornton JM. Protein recognition of adenylate: an example of a fuzzy recognition template. Journal of Molecular Biology. 263: 486-500. PMID 8918603 DOI: 10.1006/Jmbi.1996.0591 |
0.344 |
|
| 1996 |
MacCallum RM, Martin AC, Thornton JM. Antibody-antigen interactions: contact analysis and binding site topography. Journal of Molecular Biology. 262: 732-45. PMID 8876650 DOI: 10.1006/Jmbi.1996.0548 |
0.316 |
|
| 1996 |
Jones DT, Moody CM, Uppenbrink J, Viles JH, Doyle PM, Harris CJ, Pearl LH, Sadler PJ, Thornton JM. Towards meeting the Paracelsus Challenge: The design, synthesis, and characterization of paracelsin-43, an alpha-helical protein with over 50% sequence identity to an all-beta protein. Proteins. 24: 502-13. PMID 8859998 DOI: 10.1002/(Sici)1097-0134(199604)24:4<502::Aid-Prot9>3.0.Co;2-F |
0.387 |
|
| 1996 |
Doyle PM, Harris JC, Moody CM, Sadler PJ, Sims M, Thornton JM, Uppenbrink J, Viles JH. Solution structure of a biologically active cyclic LDV peptide analogue containing a type II' beta-turn mimetic. International Journal of Peptide and Protein Research. 47: 427-36. PMID 8836770 DOI: 10.1111/J.1399-3011.1996.Tb01093.X |
0.305 |
|
| 1996 |
Michie AD, Orengo CA, Thornton JM. Analysis of domain structural class using an automated class assignment protocol. Journal of Molecular Biology. 262: 168-85. PMID 8831787 DOI: 10.1006/Jmbi.1996.0506 |
0.403 |
|
| 1996 |
Martin AC, Toda K, Stirk HJ, Thornton JM. Long loops in proteins. Protein Engineering. 8: 1093-101. PMID 8819975 DOI: 10.1093/Protein/8.11.1093 |
0.355 |
|
| 1996 |
Wallace AC, Laskowski RA, Thornton JM. Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases. Protein Science : a Publication of the Protein Society. 5: 1001-13. PMID 8762132 DOI: 10.1002/Pro.5560050603 |
0.73 |
|
| 1996 |
Gray PM, Kemp GJ, Rawlings CJ, Brown NP, Sander C, Thornton JM, Orengo CM, Wodak SJ, Richelle J. Macromolecular structure information and databases. The EU BRIDGE Database Project Consortium. Trends in Biochemical Sciences. 21: 251-6. PMID 8755246 DOI: 10.1016/0968-0004(96)10037-2 |
0.335 |
|
| 1996 |
Hutchinson EG, Thornton JM. PROMOTIF--a program to identify and analyze structural motifs in proteins. Protein Science : a Publication of the Protein Society. 5: 212-20. PMID 8745398 DOI: 10.1002/Pro.5560050204 |
0.323 |
|
| 1996 |
Jones DT, Thornton JM. Potential energy functions for threading. Current Opinion in Structural Biology. 6: 210-6. PMID 8728653 DOI: 10.1016/S0959-440X(96)80076-5 |
0.357 |
|
| 1996 |
Jones DT, Miller RT, Thornton JM. Successful protein fold recognition by optimal sequence threading validated by rigorous blind testing. Proteins. 23: 387-97. PMID 8710831 DOI: 10.1002/Prot.340230312 |
0.364 |
|
| 1996 |
Wallace AC, Laskowski RA, Singh J, Thornton JM. Molecular recognition by proteins: protein-ligand interactions from a structural perspective. Biochemical Society Transactions. 24: 280-4. PMID 8674687 DOI: 10.1042/Bst0240280 |
0.699 |
|
| 1996 |
Laskowski RA, Thornton JM, Humblet C, Singh J. X-SITE: use of empirically derived atomic packing preferences to identify favourable interaction regions in the binding sites of proteins. Journal of Molecular Biology. 259: 175-201. PMID 8648645 DOI: 10.1006/Jmbi.1996.0311 |
0.685 |
|
| 1996 |
Smith LJ, Bolin KA, Schwalbe H, MacArthur MW, Thornton JM, Dobson CM. Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations. Journal of Molecular Biology. 255: 494-506. PMID 8568893 DOI: 10.1006/Jmbi.1996.0041 |
0.701 |
|
| 1996 |
Miller RT, Jones DT, Thornton JM. Protein fold recognition by sequence threading: tools and assessment techniques. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 10: 171-8. PMID 8566539 DOI: 10.1096/Fasebj.10.1.8566539 |
0.401 |
|
| 1996 |
Jones S, Thornton JM. Principles of protein-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 93: 13-20. PMID 8552589 DOI: 10.1073/Pnas.93.1.13 |
0.645 |
|
| 1996 |
Orengo CA, Swindells MB, Michie AD, Zvelebil MJ, Driscoll PC, Waterfield MD, Thornton JM. Structural similarity between the pleckstrin homology domain and verotoxin: the problem of measuring and evaluating structural similarity. Protein Science : a Publication of the Protein Society. 4: 1977-83. PMID 8535234 DOI: 10.1002/Pro.5560041003 |
0.376 |
|
| 1996 |
Thornton JM, Hutchinson EG, Jones S, Laskowski RA, MacArthur MW, Michie A, Orengo CM. Protein structures: their validation fold classification and interactions Acta Crystallographica Section a Foundations of Crystallography. 52: C6-C6. DOI: 10.1107/S0108767396098789 |
0.802 |
|
| 1996 |
Goodfellow JM, Knaggs M, Williams MA, Thornton JM. Modelling protein unfolding: a solvent insertion protocol Faraday Discussions. 103: 339. DOI: 10.1039/Fd9960300339 |
0.407 |
|
| 1995 |
Orengo CA, Jones DT, Thornton JM. Protein superfamilies and domain superfolds. Nature. 372: 631-4. PMID 7990952 DOI: 10.1038/372631A0 |
0.461 |
|
| 1995 |
Williams MA, Goodfellow JM, Thornton JM. Buried waters and internal cavities in monomeric proteins. Protein Science : a Publication of the Protein Society. 3: 1224-35. PMID 7987217 DOI: 10.1002/Pro.5560030808 |
0.337 |
|
| 1995 |
Thornton JM, Jones DT, MacArthur MW, Orengo CM, Swindells MB. Protein folds: towards understanding folding from inspection of native structures. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 348: 71-9. PMID 7770489 DOI: 10.1098/Rstb.1995.0047 |
0.733 |
|
| 1995 |
Jones S, Thornton JM. Protein-protein interactions: a review of protein dimer structures. Progress in Biophysics and Molecular Biology. 63: 31-65. PMID 7746868 DOI: 10.1016/0079-6107(94)00008-W |
0.659 |
|
| 1995 |
Swindells MB, MacArthur MW, Thornton JM. Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures. Nature Structural Biology. 2: 596-603. PMID 7664128 DOI: 10.1038/Nsb0795-596 |
0.69 |
|
| 1995 |
Wallace AC, Laskowski RA, Thornton JM. LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Engineering. 8: 127-34. PMID 7630882 DOI: 10.1093/Protein/8.2.127 |
0.671 |
|
| 1995 |
Mitchell JBO, Thornton JM, Price SL. Modelling the interactions of protein side-chains Molecular Engineering. 5: 89-105. DOI: 10.1007/978-94-011-0497-5_11 |
0.545 |
|
| 1994 |
Swindells MB, Thornton JM. A study of structural determinants in the interleukin-1 fold. Protein Engineering. 6: 711-5. PMID 8248094 DOI: 10.1093/Protein/6.7.711 |
0.404 |
|
| 1994 |
Mitchell JB, Nandi CL, McDonald IK, Thornton JM, Price SL. Amino/aromatic interactions in proteins: is the evidence stacked against hydrogen bonding? Journal of Molecular Biology. 239: 315-31. PMID 8196060 DOI: 10.1006/Jmbi.1994.1370 |
0.501 |
|
| 1994 |
Flores TP, Moss DS, Thornton JM. An algorithm for automatically generating protein topology cartoons. Protein Engineering. 7: 31-7. PMID 8140092 DOI: 10.1093/Protein/7.1.31 |
0.31 |
|
| 1994 |
Jones DT, Taylor WR, Thornton JM. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry. 33: 3038-49. PMID 8130217 DOI: 10.1021/Bi00176A037 |
0.34 |
|
| 1994 |
Jones DT, Taylor WR, Thornton JM. A mutation data matrix for transmembrane proteins. Febs Letters. 339: 269-75. PMID 8112466 DOI: 10.1016/0014-5793(94)80429-X |
0.339 |
|
| 1994 |
Orengo CA, Thornton JM. Alpha plus beta folds revisited: some favoured motifs. Structure (London, England : 1993). 1: 105-20. PMID 8069624 DOI: 10.1016/0969-2126(93)90026-D |
0.336 |
|
| 1994 |
MacArthur MW, Driscoll PC, Thornton JM. NMR and crystallography--complementary approaches to structure determination. Trends in Biotechnology. 12: 149-53. PMID 7764895 DOI: 10.1016/0167-7799(94)90074-4 |
0.714 |
|
| 1994 |
Hubbard SJ, Eisenmenger F, Thornton JM. Modeling studies of the change in conformation required for cleavage of limited proteolytic sites. Protein Science : a Publication of the Protein Society. 3: 757-68. PMID 7520312 DOI: 10.1002/Pro.5560030505 |
0.384 |
|
| 1994 |
Stirk HJ, Thornton JM. The BC loop in poliovirus coat protein VP1: an ideal acceptor site for major insertions. Protein Engineering. 7: 47-56. PMID 7511245 DOI: 10.1093/Protein/7.1.47 |
0.334 |
|
| 1994 |
MacArthur MW, Laskowski RA, Thornton JM. Knowledge-based validation of protein structure coordinates derived by X-ray crystallography and NMR spectroscopy Current Opinion in Structural Biology. 4: 731-737. DOI: 10.1016/S0959-440X(94)90172-4 |
0.793 |
|
| 1993 |
Orengo CA, Flores TP, Jones DT, Taylor WR, Thornton JM. Recurring structural motifs in proteins with different functions. Current Biology : Cb. 3: 131-9. PMID 15335780 DOI: 10.1016/0960-9822(93)90254-L |
0.466 |
|
| 1993 |
Laskowski RA, Moss DS, Thornton JM. Main-chain bond lengths and bond angles in protein structures. Journal of Molecular Biology. 231: 1049-67. PMID 8515464 DOI: 10.1006/Jmbi.1993.1351 |
0.66 |
|
| 1993 |
Hutchinson EG, Thornton JM. The Greek key motif: extraction, classification and analysis. Protein Engineering. 6: 233-45. PMID 8506258 DOI: 10.1093/Protein/6.3.233 |
0.387 |
|
| 1993 |
Moodie SL, Thornton JM. A study into the effects of protein binding on nucleotide conformation. Nucleic Acids Research. 21: 1369-80. PMID 8464727 DOI: 10.1093/Nar/21.6.1369 |
0.432 |
|
| 1993 |
Sibanda BL, Thornton JM. Accommodating sequence changes in beta-hairpins in proteins. Journal of Molecular Biology. 229: 428-47. PMID 8429555 DOI: 10.1006/Jmbi.1993.1044 |
0.349 |
|
| 1993 |
Orengo CA, Flores TP, Taylor WR, Thornton JM. Identification and classification of protein fold families. Protein Engineering. 6: 485-500. PMID 8415576 DOI: 10.1093/Protein/6.5.485 |
0.405 |
|
| 1993 |
MacArthur MW, Thornton JM. Conformational analysis of protein structures derived from NMR data. Proteins. 17: 232-51. PMID 8272423 DOI: 10.1002/Prot.340170303 |
0.706 |
|
| 1993 |
Flores TP, Orengo CA, Moss DS, Thornton JM. Comparison of conformational characteristics in structurally similar protein pairs. Protein Science : a Publication of the Protein Society. 2: 1811-26. PMID 8268794 DOI: 10.1002/Pro.5560021104 |
0.438 |
|
| 1993 |
Jones D, Thornton J. Protein fold recognition. Journal of Computer-Aided Molecular Design. 7: 439-56. PMID 8229094 DOI: 10.1007/Bf02337560 |
0.44 |
|
| 1993 |
Zvelebil MJJM, Tang L, Cookson E, Selkirk ME, Thornton JM. Molecular modelling and epitope prediction of gp29 from lymphatic filariae. Molecular and Biochemical Parasitology. 58: 145-153. PMID 7681545 DOI: 10.1016/0166-6851(93)90098-I |
0.367 |
|
| 1993 |
Hubbard SJ, Thornton JM, Campbell SF. Substrate recognition by proteinases. Faraday Discussions. 13-23. PMID 1290927 DOI: 10.1039/Fd9929300013 |
0.408 |
|
| 1993 |
Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality of protein structures Journal of Applied Crystallography. 26: 283-291. DOI: 10.1107/S0021889892009944 |
0.796 |
|
| 1993 |
Thornton JM, Macarthur MW, Mcdonald IK, Jones DT, Mitchell JBO, Nandi CL, Price SL, Zvelebil MJJM. Protein Structures and Complexes: What they Reveal about the Interactions that Stabilize them Philosophical Transactions of the Royal Society A. 345: 113-129. DOI: 10.1098/Rsta.1993.0123 |
0.602 |
|
| 1993 |
Jones DT, Orengo C, Taylor WR, Thornton J. Progress Towards Recognising Protein Folds from Amino Acid Sequence Protein Engineering Design & Selection. 6: 124-124. DOI: 10.1093/Protein/6.Supplement.124-B |
0.336 |
|
| 1993 |
Mitchell JBO, Nandi CL, Thornton JM, Price SL, Singh J, Snarey M. A comparison of three theoretical approaches to the study of side-chain interactions in proteins Journal of the Chemical Society, Faraday Transactions. 89: 2619. DOI: 10.1039/Ft9938902619 |
0.52 |
|
| 1993 |
Mitchell JBO, Nandi CL, Ali S, McDonald IK, Thornton JM, Price SL, Singh J. Amino/aromatic interactions Nature. 366: 413-413. DOI: 10.1038/366413A0 |
0.483 |
|
| 1993 |
Swindells MB, Orengo CA, Jones DT, Pearl LH, Thornton JM. Shared structural motif in proteins Nature. 365: 21-21. DOI: 10.1038/365021B0 |
0.435 |
|
| 1992 |
Sibanda BL, Thornton JM. Conformation of beta hairpins in protein structures: classification and diversity in homologous structures. Methods in Enzymology. 202: 59-82. PMID 1784189 DOI: 10.1016/0076-6879(91)02007-V |
0.43 |
|
| 1992 |
Stirk HJ, Woolfson DN, Hutchinson EG, Thornton JM. Depicting topology and handedness in jellyroll structures. Febs Letters. 308: 1-3. PMID 1644197 DOI: 10.1016/0014-5793(92)81036-L |
0.321 |
|
| 1992 |
Jones DT, Taylor WR, Thornton JM. The rapid generation of mutation data matrices from protein sequences. Computer Applications in the Biosciences : Cabios. 8: 275-82. PMID 1633570 DOI: 10.1093/Bioinformatics/8.3.275 |
0.307 |
|
| 1992 |
Mitchell JB, Thornton JM, Singh J, Price SL. Towards an understanding of the arginine-aspartate interaction. Journal of Molecular Biology. 226: 251-62. PMID 1619654 DOI: 10.1016/0022-2836(92)90137-9 |
0.519 |
|
| 1992 |
Jones DT, Taylor WR, Thornton JM. A new approach to protein fold recognition. Nature. 358: 86-9. PMID 1614539 DOI: 10.1038/358086A0 |
0.446 |
|
| 1992 |
Morris AL, MacArthur MW, Hutchinson EG, Thornton JM. Stereochemical quality of protein structure coordinates. Proteins. 12: 345-64. PMID 1579569 DOI: 10.1002/Prot.340120407 |
0.685 |
|
| 1992 |
Thornton JM. Lessons from analyzing protein structures Current Opinion in Structural Biology. 2: 888-894. DOI: 10.1016/0959-440X(92)90115-N |
0.432 |
|
| 1991 |
Hutchinson EG, Thornton JM. HERA--a program to draw schematic diagrams of protein secondary structures. Proteins. 8: 203-12. PMID 2281084 DOI: 10.1002/Prot.340080303 |
0.349 |
|
| 1991 |
Hunter CA, Singh J, Thornton JM. π-π interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins Journal of Molecular Biology. 218: 837-846. PMID 2023252 DOI: 10.1016/0022-2836(91)90271-7 |
0.334 |
|
| 1991 |
MacArthur MW, Thornton JM. Influence of proline residues on protein conformation. Journal of Molecular Biology. 218: 397-412. PMID 2010917 DOI: 10.1016/0022-2836(91)90721-H |
0.687 |
|
| 1991 |
Thornton JM, Flores TP, Jones DT, Swindells MB. Protein structure. Prediction of progress at last. Nature. 354: 105-6. PMID 1944583 DOI: 10.1038/354105A0 |
0.388 |
|
| 1991 |
Thanki N, Umrania Y, Thornton JM, Goodfellow JM. Analysis of protein main-chain solvation as a function of secondary structure. Journal of Molecular Biology. 221: 669-91. PMID 1920440 DOI: 10.1016/0022-2836(91)80080-E |
0.343 |
|
| 1991 |
Singh J, Saldanha J, Thornton JM. A novel method for the modelling of peptide ligands to their receptors. Protein Engineering. 4: 251-61. PMID 1857711 DOI: 10.1093/Protein/4.3.251 |
0.372 |
|
| 1991 |
Swindells MB, Thornton JM. Structure prediction and modelling. Current Opinion in Biotechnology. 2: 512-9. PMID 1367669 DOI: 10.1016/0958-1669(91)90074-F |
0.426 |
|
| 1991 |
Swindells MB, Thornton JM. Modelling by homology Current Opinion in Structural Biology. 1: 219-223. DOI: 10.1016/0959-440X(91)90064-Z |
0.413 |
|
| 1991 |
Garratt RC, Thornton JM, Taylor WR. An extension of secondary structure prediction towards the production of tertiary structure Febs Letters. 280: 141-146. DOI: 10.1016/0014-5793(91)80223-P |
0.587 |
|
| 1990 |
Wilmot CM, Thornton JM. Beta-turns and their distortions: a proposed new nomenclature. Protein Engineering. 3: 479-93. PMID 2371257 DOI: 10.1093/Protein/3.6.479 |
0.61 |
|
| 1990 |
Singh J, Thornton JM. SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups. Journal of Molecular Biology. 211: 595-615. PMID 2308168 DOI: 10.1016/0022-2836(90)90268-Q |
0.32 |
|
| 1990 |
Thanki N, Thornton JM, Goodfellow JM. Influence of secondary structure on the hydration of serine, threonine and tyrosine residues in proteins. Protein Engineering. 3: 495-508. PMID 2115163 DOI: 10.1093/Protein/3.6.495 |
0.34 |
|
| 1989 |
Rooman MJ, Wodak SJ, Thornton JM. Amino acid sequence templates derived from recurrent turn motifs in proteins: critical evaluation of their predictive power. Protein Engineering. 3: 23-7. PMID 2813339 DOI: 10.1093/Protein/3.1.23 |
0.383 |
|
| 1989 |
Reid LS, Thornton JM. Rebuilding flavodoxin from C alpha coordinates: a test study. Proteins. 5: 170-82. PMID 2748580 DOI: 10.1002/Prot.340050212 |
0.366 |
|
| 1989 |
Thornton JM, Gardner SP. Protein motifs and data-base searching. Trends in Biochemical Sciences. 14: 300-4. PMID 2672454 DOI: 10.1016/0968-0004(89)90069-8 |
0.45 |
|
| 1989 |
Sibanda BL, Blundell TL, Thornton JM. Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering. Journal of Molecular Biology. 206: 759-77. PMID 2500530 DOI: 10.1016/0022-2836(89)90583-4 |
0.479 |
|
| 1989 |
Goodfellow JM, Thanki N, Thornton JM. Preliminary Analysis of Water Molecule Distributions in Proteins Molecular Simulation. 3: 167-182. DOI: 10.1080/08927028908034626 |
0.362 |
|
| 1988 |
Singh J, Thornton JM, Snarey M, Campbell SF. The geometries of interacting arginine-carboxyls in proteins. Febs Letters. 224: 161-71. PMID 3678490 DOI: 10.1016/0014-5793(87)80441-6 |
0.304 |
|
| 1988 |
Barlow DJ, Thornton JM. Helix geometry in proteins. Journal of Molecular Biology. 201: 601-19. PMID 3418712 DOI: 10.1016/0022-2836(88)90641-9 |
0.331 |
|
| 1988 |
Thornton JM, Sibanda BL, Edwards MS, Barlow DJ. Analysis, design and modification of loop regions in proteins. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 8: 63-9. PMID 3282506 DOI: 10.1002/Bies.950080205 |
0.405 |
|
| 1988 |
Thornton JM, Singh J, Campbell S, Blundell TL. Protein-protein recognition via side-chain interactions. Biochemical Society Transactions. 16: 927-30. PMID 3224756 DOI: 10.1042/Bst0160927 |
0.511 |
|
| 1988 |
Wilmot CM, Thornton JM. Analysis and prediction of the different types of beta-turn in proteins. Journal of Molecular Biology. 203: 221-32. PMID 3184187 DOI: 10.1016/0022-2836(88)90103-9 |
0.588 |
|
| 1988 |
Thanki N, Thornton JM, Goodfellow JM. Distributions of water around amino acid residues in proteins. Journal of Molecular Biology. 202: 637-57. PMID 3172231 DOI: 10.1016/0022-2836(88)90292-6 |
0.321 |
|
| 1987 |
Blundell TL, Sibanda BL, Sternberg MJ, Thornton JM. Knowledge-based prediction of protein structures and the design of novel molecules. Nature. 326: 347-52. PMID 3550471 DOI: 10.1038/326347A0 |
0.552 |
|
| 1987 |
Edwards MS, Sternberg MJE, Thornton JM. Structural and sequence patterns in the loops of βαβ units Protein Engineering, Design and Selection. 1: 173-181. PMID 3507703 DOI: 10.1093/Protein/1.3.173 |
0.336 |
|
| 1986 |
Barlow DJ, Thornton JM. The distribution of charged groups in proteins. Biopolymers. 25: 1717-33. PMID 3768483 DOI: 10.1002/Bip.360250913 |
0.317 |
|
| 1986 |
Barlow DJ, Edwards MS, Thornton JM. Continuous and discontinuous protein antigenic determinants Nature. 322: 747-748. PMID 2427953 DOI: 10.1038/322747A0 |
0.364 |
|
| 1986 |
Blundell TL, Barlow D, Sibanda BL, Thornton JM, Taylor W, Tickle IJ, Sternberg MJE, Pitts JE, Haneef I, Hemmings AM, Robson B. Three-dimensional structural aspects of the design of new protein molecules Philosophical Transactions of the Royal Society A. 317: 333-344. DOI: 10.1098/Rsta.1986.0043 |
0.433 |
|
| 1985 |
Sibanda BL, Thornton JM. Beta-hairpin families in globular proteins. Nature. 316: 170-4. PMID 4010788 DOI: 10.1038/316170A0 |
0.352 |
|
| 1985 |
Garratt RC, Taylor WR, Thornton JM. The influence of tertiary structure on secondary structure prediction Febs Letters. 188: 59-62. DOI: 10.1016/0014-5793(85)80874-7 |
0.597 |
|
| 1984 |
Taylor WR, Thornton JM. Recognition of super-secondary structure in proteins Journal of Molecular Biology. 173: 487-514. PMID 6708107 DOI: 10.1016/0022-2836(84)90393-0 |
0.404 |
|
| 1984 |
Blundell T, Barlow D, Borkakoti N, Thornton J. Solvent-induced distortions and the curvature of alpha-helices. Nature. 306: 281-3. PMID 6646210 DOI: 10.1038/306281A0 |
0.467 |
|
| 1984 |
Pearl LH, Tickle IJ, Honegger A, Taylor GL, Barlow DJ, Thornton JM, Haneef I, Taylor WR, Blundell TL, Busetta B. The applications of computer calligraphics in protein engineering and drug design Acta Crystallographica Section a Foundations of Crystallography. 40: C42-C42. DOI: 10.1107/S0108767384098512 |
0.445 |
|
| 1983 |
Barlow DJ, Thornton JM. Ion-pairs in proteins. Journal of Molecular Biology. 168: 867-85. PMID 6887253 DOI: 10.1016/S0022-2836(83)80079-5 |
0.349 |
|
| 1983 |
Thornton JM, Sibanda BL. Amino and carboxy-terminal regions in globular proteins. Journal of Molecular Biology. 167: 443-60. PMID 6864804 DOI: 10.1016/S0022-2836(83)80344-1 |
0.404 |
|
| 1983 |
Taylor WR, Thornton JM. Prediction of super-secondary structure in proteins Nature. 301: 540-542. PMID 6823335 DOI: 10.1038/301540A0 |
0.398 |
|
| 1982 |
Thornton JM, Chakauya BL. Conformation of terminal regions in proteins. Nature. 298: 296-7. PMID 7088178 DOI: 10.1038/298296A0 |
0.342 |
|
| 1982 |
Thornton JM. Electrostatic interactions in proteins. Nature. 295: 13-4. PMID 7057870 DOI: 10.1038/295013A0 |
0.324 |
|
| 1981 |
Thornton JM. Disulphide bridges in globular proteins Journal of Molecular Biology. 151: 261-287. PMID 7338898 DOI: 10.1016/0022-2836(81)90515-5 |
0.385 |
|
| 1981 |
Thornton JM. Some principles of protein structure Acta Crystallographica Section a Foundations of Crystallography. 37: C18-C19. DOI: 10.1107/S0108767381099005 |
0.304 |
|
| 1979 |
Sternberg MJ, Thornton JM. Prediction of protein structure from amino acid sequence. Biochemical Society Transactions. 6: 1119-23. PMID 744369 DOI: 10.1042/Bst0061119 |
0.419 |
|
| 1978 |
Sternberg MJ, Thornton JM. On the conformation of proteins: hydrophobic ordering of strands in beta-pleated sheets. Journal of Molecular Biology. 115: 1-17. PMID 926175 DOI: 10.1016/0022-2836(77)90242-X |
0.327 |
|
| 1978 |
Phillips DC, Sternberg MJ, Thornton JM, Wilson IA. An analysis of the structure of triose phosphate isomerase and its comparison with lactate dehydrogenase. Journal of Molecular Biology. 119: 329-51. PMID 633372 DOI: 10.1016/0022-2836(78)90440-0 |
0.63 |
|
| 1978 |
Sternberg MJ, Thornton JM. Prediction of protein structure from amino acid sequence. Nature. 271: 15-20. PMID 342964 DOI: 10.1038/271015A0 |
0.43 |
|
| 1977 |
Phillips DC, Rivers PS, Sternberg MJ, Thornton JM, Wilson IA. An analysis of the three-dimensional structure of chicken triose phosphate isomerase. Biochemical Society Transactions. 5: 642-7. PMID 902882 DOI: 10.1042/Bst0050642 |
0.613 |
|
| 1977 |
Sternberg MJ, Thornton JM. On the conformation of proteins: towards the prediction of strand arrangements in beta-pleated sheets. Journal of Molecular Biology. 113: 401-18. PMID 886615 DOI: 10.1016/0022-2836(77)90149-8 |
0.357 |
|
| 1977 |
Sternberg MJ, Thornton JM. On the conformation of proteins: an analysis of beta-pleated sheets. Journal of Molecular Biology. 110: 285-96. PMID 845953 DOI: 10.1016/S0022-2836(77)80073-9 |
0.361 |
|
| 1977 |
Sternberg MJ, Thornton JM. On the conformation of proteins: the handedness of the connection between parallel beta-strands. Journal of Molecular Biology. 110: 269-83. PMID 845952 DOI: 10.1016/S0022-2836(77)80072-7 |
0.348 |
|
| 1977 |
Thornton JM, Bayley PM. Conformational energy calculations for dinucleotide molecules: a study of the nucleotide coenzyme nicotinamide adenine dinucleotide (NAD+). Biopolymers. 16: 1971-86. PMID 198038 DOI: 10.1002/Bip.1977.360160911 |
0.562 |
|
| 1976 |
Thornton JM, Bayley PM. Conformational energy calculations for dinucleotide molecules. A systematic study of dinucleotide conformation, with application to diadenosine pyrophosphate. Biopolymers. 15: 955-75. PMID 177120 DOI: 10.1002/Bip.1976.360150511 |
0.568 |
|
| 1975 |
Thornton JM, Bayley PM. Conformational energy calculations for dinucleotide molecules. A study of the component mononucleotide adenosine 3'-monophosphate. The Biochemical Journal. 149: 585-96. PMID 1200996 DOI: 10.1042/Bj1490585 |
0.548 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2018 |
Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM. Transform-MinER: Transforming Molecules in Enzyme Reactions. Bioinformatics (Oxford, England). PMID 29762650 DOI: 10.1093/Bioinformatics/Bty394 |
0.299 |
|
| 2010 |
Brooksbank C, Cameron G, Thornton J. The European Bioinformatics Institute's data resources. Nucleic Acids Research. 38: D17-25. PMID 19934258 DOI: 10.1093/Nar/Gkp986 |
0.299 |
|
| 1993 |
Nandi CL, Singh J, Thornton JM. Atomic environments of arginine side chains in proteins. Protein Engineering. 6: 247-59. PMID 8506259 DOI: 10.1093/Protein/6.3.247 |
0.298 |
|
| 1986 |
Thornton J, Edwards M, Taylor W, Barlow D. Location of ‘continuous’ antigenic determinants in the protruding regions of proteins. The Embo Journal. 5: 409-413. DOI: 10.1002/J.1460-2075.1986.Tb04226.X |
0.296 |
|
| 1995 |
Hutchinson EG, Thornton JM. A revised set of potentials for beta-turn formation in proteins. Protein Science : a Publication of the Protein Society. 3: 2207-16. PMID 7756980 DOI: 10.1002/Pro.5560031206 |
0.296 |
|
| 1998 |
Viles JH, Patel SU, Mitchell JB, Moody CM, Justice DE, Uppenbrink J, Doyle PM, Harris CJ, Sadler PJ, Thornton JM. Design, synthesis and structure of a zinc finger with an artificial beta-turn. Journal of Molecular Biology. 279: 973-86. PMID 9642075 DOI: 10.1006/Jmbi.1998.1764 |
0.292 |
|
| 2013 |
Zhang F, Pracheil T, Thornton J, Liu Z. Adenosine Triphosphate (ATP) Is a Candidate Signaling Molecule in the Mitochondria-to-Nucleus Retrograde Response Pathway. Genes. 4: 86-100. PMID 24605246 DOI: 10.3390/Genes4010086 |
0.292 |
|
| 1999 |
Jones S, van Heyningen P, Berman HM, Thornton JM. Protein-DNA Interactions Biochemical Society Transactions. 27: A88-A88. DOI: 10.1042/Bst027A088A |
0.291 |
|
| 1992 |
Stirk HJ, Thornton JM, Howard CR. A topological model for hepatitis B surface antigen Intervirology. 33: 148-158. PMID 1500275 DOI: 10.1159/000150244 |
0.291 |
|
| 2005 |
Liu Z, Spírek M, Thornton J, Butow RA. A novel degron-mediated degradation of the RTG pathway regulator, Mks1p, by SCFGrr1. Molecular Biology of the Cell. 16: 4893-904. PMID 16093347 DOI: 10.1091/Mbc.E05-06-0516 |
0.288 |
|
| 1976 |
Perkins WJ, Piper EA, Thornton J. Computer techniques for conformational studies of biological molecules. Computers in Biology and Medicine. 6: 23-31. PMID 1253578 DOI: 10.1016/0010-4825(76)90034-2 |
0.287 |
|
| 1999 |
Shepherd AJ, Gorse D, Thornton JM. Prediction of the location and type of beta-turns in proteins using neural networks. Protein Science : a Publication of the Protein Society. 8: 1045-55. PMID 10338015 DOI: 10.1110/Ps.8.5.1045 |
0.286 |
|
| 1985 |
Reid K, Lindley P, Thornton J. Sulphur-aromatic interactions in proteins Febs Letters. 190: 209-213. DOI: 10.1016/0014-5793(85)81285-0 |
0.286 |
|
| 1995 |
McDonald IK, Thornton JM. The application of hydrogen bonding analysis in X-ray crystallography to help orientate asparagine, glutamine and histidine side chains. Protein Engineering. 8: 217-24. PMID 7479683 DOI: 10.1093/Protein/8.3.217 |
0.285 |
|
| 2012 |
Pracheil T, Thornton J, Liu Z. TORC2 signaling is antagonized by protein phosphatase 2A and the Far complex in Saccharomyces cerevisiae. Genetics. 190: 1325-39. PMID 22298706 DOI: 10.1534/Genetics.111.138305 |
0.285 |
|
| 1996 |
Kalsi JK, Martin ACR, Hirabayashi Y, Ehrenstein M, Longhurst CM, Ravirajan C, Zvelebil M, Stollar BD, Thornton JM, Isenberg DA. Functional and modelling studies of the binding of human monoclonal anti-DNA antibodies to DNA. Molecular Immunology. 33: 471-483. PMID 8676898 DOI: 10.1016/0161-5890(95)00138-7 |
0.284 |
|
| 2004 |
Auwerx J, Avner P, Baldock R, Ballabio A, Balling R, Barbacid M, Berns A, Bradley A, Brown S, Carmeliet P, Chambon P, Cox R, Davidson D, Davies K, Duboule D, ... ... Thornton J, et al. The European dimension for the mouse genome mutagenesis program. Nature Genetics. 36: 925-7. PMID 15340424 DOI: 10.1038/Ng0904-925 |
0.284 |
|
| 1987 |
Gait M, Thornton J, Wetzel R. Protein Engineering '87—conference report "Protein Engineering, Design and Selection". 1: 267-270. DOI: 10.1093/Protein/1.4.267 |
0.284 |
|
| 2011 |
Orchard S, Al-Lazikani B, Bryant S, Clark D, Calder E, Dix I, Engkvist O, Forster M, Gaulton A, Gilson M, Glen R, Grigorov M, Hammond-Kosack K, Harland L, Hopkins A, ... ... Thornton J, et al. Minimum information about a bioactive entity (MIABE). Nature Reviews. Drug Discovery. 10: 661-9. PMID 21878981 DOI: 10.1038/Nrd3503 |
0.284 |
|
| 1993 |
Zvelebil MJJM, Thornton JM. Peptide-protein interactions: an overview. Quarterly Reviews of Biophysics. 26: 333-363. PMID 8022970 DOI: 10.1017/S0033583500002870 |
0.284 |
|
| 1975 |
Tanswell P, Thornton JM, Korda AV, Williams RJ. Quantitative determination of the conformation of ATP in aqueous solution using the lanthanide cations as nuclear-magnetic-resonance probes. European Journal of Biochemistry. 57: 135-45. PMID 240716 DOI: 10.1111/J.1432-1033.1975.Tb02284.X |
0.28 |
|
| 1994 |
Chan AW, Hutchinson EG, Harris D, Thornton JM. Identification, classification, and analysis of beta-bulges in proteins. Protein Science : a Publication of the Protein Society. 2: 1574-90. PMID 8251933 DOI: 10.1002/Pro.5560021004 |
0.28 |
|
| 1985 |
Singh J, Thornton J. The interaction between phenylalanine rings in proteins Febs Letters. 191: 1-6. DOI: 10.1016/0014-5793(85)80982-0 |
0.279 |
|
| 2001 |
Valdar WS, Thornton JM. Conservation helps to identify biologically relevant crystal contacts. Journal of Molecular Biology. 313: 399-416. PMID 11800565 DOI: 10.1006/Jmbi.2001.5034 |
0.278 |
|
| 2019 |
Fuentealba M, Dönertaş HM, Williams R, Labbadia J, Thornton JM, Partridge L. Using the drug-protein interactome to identify anti-ageing compounds for humans. Plos Computational Biology. 15: e1006639. PMID 30625143 DOI: 10.1371/Journal.Pcbi.1006639 |
0.278 |
|
| 2005 |
Ranea JA, Grant A, Thornton JM, Orengo CA. Microeconomic principles explain an optimal genome size in bacteria. Trends in Genetics : Tig. 21: 21-5. PMID 15680509 DOI: 10.1016/J.Tig.2004.11.014 |
0.275 |
|
| 2003 |
Liu Z, Sekito T, Spírek M, Thornton J, Butow RA. Retrograde signaling is regulated by the dynamic interaction between Rtg2p and Mks1p. Molecular Cell. 12: 401-11. PMID 14536080 DOI: 10.1016/S1097-2765(03)00285-5 |
0.275 |
|
| 1978 |
Levine BA, Coffman DM, Thornton JM. Calcium binding by troponin-C. A proton magnetic resonance study. Journal of Molecular Biology. 115: 743-60. PMID 22761 DOI: 10.1016/0022-2836(77)90113-9 |
0.272 |
|
| 2000 |
Sekito T, Thornton J, Butow RA. Mitochondria-to-Nuclear Signaling Is Regulated by the Subcellular Localization of the Transcription Factors Rtg1p and Rtg3p Molecular Biology of the Cell. 11: 2103-2115. PMID 10848632 DOI: 10.1091/Mbc.11.6.2103 |
0.271 |
|
| 2023 |
Riziotis IG, J M Ribeiro A, Borkakoti N, Thornton JM. The 3D modules of enzyme catalysis: deconstructing active sites into distinct functional entities. Journal of Molecular Biology. 168254. PMID 37652131 DOI: 10.1016/j.jmb.2023.168254 |
0.269 |
|
| 1993 |
Woolfson DN, Evans PA, Hutchinson EG, Thornton JM. Topological and stereochemical restrictions in beta-sandwich protein structures. Protein Engineering. 6: 461-70. PMID 8415573 DOI: 10.1093/PROTEIN/6.5.461 |
0.268 |
|
| 2019 |
Martin-Herranz DE, Aref-Eshghi E, Bonder MJ, Stubbs TM, Choufani S, Weksberg R, Stegle O, Sadikovic B, Reik W, Thornton JM. Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1. Genome Biology. 20: 146. PMID 31409373 DOI: 10.1186/S13059-019-1753-9 |
0.266 |
|
| 2008 |
Hutchinson EG, Morris AL, Thornton JM. Structural Patterns in Globular Proteins Structure Correlation. 1: 635-667. DOI: 10.1002/9783527616091.ch15 |
0.265 |
|
| 1991 |
Hubbard SJ, Campbell SF, Thornton JM. Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors. Journal of Molecular Biology. 220: 507-30. PMID 1856871 DOI: 10.1016/0022-2836(91)90027-4 |
0.265 |
|
| 2003 |
Gerstein M, Thornton JM. Sequences and topology. Current Opinion in Structural Biology. 13: 341-3. PMID 12831885 DOI: 10.1016/S0959-440X(03)00080-0 |
0.264 |
|
| 1978 |
Levine BA, Thornton JM, Fernandes R, Kelly CM, Mercola D. Comparison of the calcium- and magnesium-induced structural changes of troponin-C. A proton magnetic resonance study Bba - Protein Structure. 535: 11-24. PMID 667113 DOI: 10.1016/0005-2795(78)90028-4 |
0.262 |
|
| 2008 |
Liu Z, Thornton J, Spírek M, Butow RA. Activation of the SPS amino acid-sensing pathway in Saccharomyces cerevisiae correlates with the phosphorylation state of a sensor component, Ptr3. Molecular and Cellular Biology. 28: 551-63. PMID 17984223 DOI: 10.1128/Mcb.00929-07 |
0.26 |
|
| 2009 |
Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, ... ... Thornton J, et al. Prepublication data sharing. Nature. 461: 168-70. PMID 19741685 DOI: 10.1038/461168A |
0.257 |
|
| 2000 |
Rison SC, Hodgman TC, Thornton JM. Comparison of functional annotation schemes for genomes. Functional & Integrative Genomics. 1: 56-69. PMID 11793222 DOI: 10.1007/S101420000005 |
0.254 |
|
| 2014 |
Papatheodorou I, Petrovs R, Thornton JM. Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing. Bioinformatics (Oxford, England). 30: 2999-3003. PMID 25064569 DOI: 10.1093/Bioinformatics/Btu493 |
0.253 |
|
| 1993 |
Swindells MB, Orengo CA, Jones DT, Pearl LH, Thornton JM. Recurrence of a binding motif? Nature. 362: 299. PMID 8384322 DOI: 10.1038/362299A0 |
0.253 |
|
| 2008 |
Watson JD, Thornton JM. The impact of structural proteomics on macromolecular structure databases Structural Proteomics and Its Impact On the Life Sciences. 29-49. DOI: 10.1142/9789812772053_0002 |
0.251 |
|
| 1976 |
Hensens OD, Hill HA, Thornton J, Turner AM, Williams RJ. The structures of some cobalamins in solution Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 273: 353-357. PMID 4843 DOI: 10.1098/Rstb.1976.0020 |
0.25 |
|
| 1994 |
McDonald IK, Thornton JM. Satisfying hydrogen bonding potential in proteins. Journal of Molecular Biology. 238: 777-93. PMID 8182748 DOI: 10.1006/Jmbi.1994.1334 |
0.249 |
|
| 2018 |
Dönertaş HM, Fuentealba Valenzuela M, Partridge L, Thornton JM. Gene Expression-Based Drug Repurposing to Target Ageing. Aging Cell. e12819. PMID 29959820 DOI: 10.1111/Acel.12819 |
0.249 |
|
| 2022 |
Santana CA, Izidoro SC, de Melo-Minardi RC, Tyzack JD, Ribeiro AJM, Pires DEV, Thornton JM, de A Silveira S. GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs. Nucleic Acids Research. PMID 35524575 DOI: 10.1093/nar/gkac323 |
0.249 |
|
| 1974 |
Levine BA, Thornton JM, Williams RJP. Conformational studies of lanthanide complexes with carboxylate ligands Journal of the Chemical Society, Chemical Communications. 669-670. DOI: 10.1039/C39740000669 |
0.248 |
|
| 2015 |
Thornton J. What you need to know to make the most of big data in biology. Lancet (London, England). 385: S5-6. PMID 25726450 DOI: 10.1016/S0140-6736(15)60321-X |
0.248 |
|
| 2016 |
Castillo-Quan JI, Li L, Kinghorn KJ, Ivanov DK, Tain LS, Slack C, Kerr F, Nespital T, Thornton J, Hardy J, Bjedov I, Partridge L. Lithium Promotes Longevity through GSK3/NRF2-Dependent Hormesis. Cell Reports. PMID 27068460 DOI: 10.1016/J.Celrep.2016.03.041 |
0.246 |
|
| 2002 |
Sekito T, Liu Z, Thornton J, Butow RA. RTG-dependent mitochondria-to-nucleus signaling is regulated by MKS1 and is linked to formation of yeast prion [URE3]. Molecular Biology of the Cell. 13: 795-804. PMID 11907262 DOI: 10.1091/Mbc.01-09-0473 |
0.246 |
|
| 2001 |
Epstein CB, Waddle JA, Hale W, Davé V, Thornton J, Macatee TL, Garner HR, Butow RA. Genome-wide responses to mitochondrial dysfunction. Molecular Biology of the Cell. 12: 297-308. PMID 11179416 DOI: 10.1091/Mbc.12.2.297 |
0.246 |
|
| 2017 |
Mukhopadhyay A, Borkakoti N, Tyzack J, Velankar S, Thornton JM. Annotation of organic cofactor molecules in PDB Acta Crystallographica Section a Foundations and Advances. 73: C972-C972. DOI: 10.1107/S2053273317086028 |
0.246 |
|
| 2017 |
Bolukbasi E, Khericha M, Regan JC, Ivanov DK, Adcott J, Dyson MC, Nespital T, Thornton JM, Alic N, Partridge L. Intestinal Fork Head Regulates Nutrient Absorption and Promotes Longevity. Cell Reports. 21: 641-653. PMID 29045833 DOI: 10.1016/J.Celrep.2017.09.042 |
0.245 |
|
| 2012 |
Crosswell LC, Thornton JM. ELIXIR: a distributed infrastructure for European biological data. Trends in Biotechnology. 30: 241-2. PMID 22417641 DOI: 10.1016/J.Tibtech.2012.02.002 |
0.244 |
|
| 2008 |
Kahraman A, Thornton JM. Methods to characterize the structure of enzyme binding sites Computational Structural Biology: Methods and Applications. 189-221. DOI: 10.1142/9789812778789_0008 |
0.244 |
|
| 2020 |
Işıldak U, Somel M, Thornton JM, Dönertaş HM. Temporal changes in the gene expression heterogeneity during brain development and aging. Scientific Reports. 10: 4080. PMID 32139741 DOI: 10.1038/S41598-020-60998-0 |
0.242 |
|
| 1987 |
Thornton JM. Building and design Nature. 330: 430-430. DOI: 10.1038/330430A0 |
0.242 |
|
| 2009 |
Thornton J. Annotations for all by all - The BioSapiens network Genome Biology. 10. PMID 19232072 DOI: 10.1186/Gb-2009-10-2-401 |
0.236 |
|
| 2005 |
Giannattasio S, Liu Z, Thornton J, Butow RA. Retrograde response to mitochondrial dysfunction is separable from TOR1/2 regulation of retrograde gene expression. The Journal of Biological Chemistry. 280: 42528-35. PMID 16253991 DOI: 10.1074/Jbc.M509187200 |
0.236 |
|
| 2012 |
Chen Y, Legan SK, Mahan A, Thornton J, Xu H, Schwarz MA. Endothelial-monocyte activating polypeptide II disrupts alveolar epithelial type II to type I cell transdifferentiation. Respiratory Research. 13: 1. PMID 22214516 DOI: 10.1186/1465-9921-13-1 |
0.233 |
|
| 2012 |
Schwarz MA, Thornton J, Xu H, Awasthi N, Schwarz RE. Cell proliferation and migration are modulated by Cdk-1-phosphorylated endothelial-monocyte activating polypeptide II. Plos One. 7: e33101. PMID 22412987 DOI: 10.1371/Journal.Pone.0033101 |
0.233 |
|
| 1991 |
Thornton JM. Modelling antibody combining sites: a review Ciba Foundation Symposium. 159: 55-69; discussion 69. PMID 1959453 DOI: 10.1002/9780470514108.CH5 |
0.232 |
|
| 2017 |
Kerr F, Sofola-Adesakin O, Ivanov DK, Gatliff J, Gomez Perez-Nievas B, Bertrand HC, Martinez P, Callard R, Snoeren I, Cochemé HM, Adcott J, Khericha M, Castillo-Quan JI, Wells G, Noble W, ... Thornton J, et al. Direct Keap1-Nrf2 disruption as a potential therapeutic target for Alzheimer's disease. Plos Genetics. 13: e1006593. PMID 28253260 DOI: 10.1371/Journal.Pgen.1006593 |
0.232 |
|
| 2020 |
Santana CA, Silveira SA, Moraes JPA, Izidoro SC, de Melo-Minardi RC, Ribeiro AJM, Tyzack JD, Borkakoti N, Thornton JM. GRaSP: a graph-based residue neighborhood strategy to predict binding sites. Bioinformatics (Oxford, England). 36: i726-i734. PMID 33381849 DOI: 10.1093/bioinformatics/btaa805 |
0.23 |
|
| 2017 |
Thornton J, Orengo C. Editorial overview: Catalysis and regulation. Current Opinion in Structural Biology. 47: vi-viii. PMID 29221623 DOI: 10.1016/J.Sbi.2017.11.005 |
0.23 |
|
| 2024 |
Goswami P, Banks CAS, Thornton J, Bengs B, Sardiu ME, Florens L, Washburn MP. Distinct regions within SAP25 recruit O-linked glycosylation, DNA demethylation, and ubiquitin ligase and hydrolase activities to the Sin3/HDAC complex. Biorxiv : the Preprint Server For Biology. PMID 38496433 DOI: 10.1101/2024.03.05.583553 |
0.23 |
|
| 1998 |
THORNTON J. The future of bioinformatics Trends in Biotechnology. 16: 30-31. DOI: 10.1016/S0167-7799(98)00135-8 |
0.228 |
|
| 2022 |
Ribeiro AJM, Riziotis IG, Tyzack JD, Borkakoti N, Thornton JM. Using mechanism similarity to understand enzyme evolution. Biophysical Reviews. 14: 1273-1280. PMID 36659981 DOI: 10.1007/s12551-022-01022-9 |
0.227 |
|
| 2023 |
Ribeiro AJM, Riziotis IG, Tyzack JD, Borkakoti N, Thornton JM. EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactions. Nature Methods. 20: 1516-1522. PMID 37735566 DOI: 10.1038/s41592-023-02006-7 |
0.227 |
|
| 2018 |
Dönertaş HM, Fuentealba M, Partridge L, Thornton JM. Identifying Potential Ageing-Modulating Drugs In Silico. Trends in Endocrinology and Metabolism: Tem. PMID 30581056 DOI: 10.1016/J.Tem.2018.11.005 |
0.226 |
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| 2009 |
Steinbeck C, Al-Lazikani B, Hermjakob H, Overington J, Thornton J. New open drug activity data at EBI Chemistry Central Journal. 3. DOI: 10.1186/1752-153X-3-S1-O3 |
0.226 |
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| 2023 |
Borkakoti N, Thornton JM. AlphaFold2 protein structure prediction: Implications for drug discovery. Current Opinion in Structural Biology. 78: 102526. PMID 36621153 DOI: 10.1016/j.sbi.2022.102526 |
0.221 |
|
| 2018 |
Ivanov D, Hill M, Allen N, Thornton J, Williams J, Escott-Price V. P3-137: Deconvoluting The Dementia Phenotype Using Functional Computational Approaches Alzheimers & Dementia. 14. DOI: 10.1016/J.Jalz.2018.06.1494 |
0.221 |
|
| 2014 |
Brooksbank C, Bergman MT, Apweiler R, Birney E, Thornton J. The European Bioinformatics Institute's data resources 2014. Nucleic Acids Research. 42: D18-25. PMID 24271396 DOI: 10.1093/nar/gkt1206 |
0.213 |
|
| 2011 |
Partridge L, Thornton J, Bates G. The new science of ageing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 366: 6-8. PMID 21115524 DOI: 10.1098/Rstb.2010.0298 |
0.211 |
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| 2020 |
Orengo C, Velankar S, Wodak S, Zoete V, Bonvin AM, Elofsson A, Feenstra KA, Gerloff DL, Hamelryck T, Hancock JM, Helmer-Citterich M, Hospital A, Orozco M, Perrakis A, Rarey M, ... ... Thornton JM, et al. A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) F1000research. 9: 278. DOI: 10.12688/f1000research.20559.1 |
0.21 |
|
| 2012 |
Dean C, Osborn M, Oshlack A, Thornton J. Women in science. Genome Biology. 13: 148. PMID 22405408 DOI: 10.1186/Gb-2012-13-3-148 |
0.203 |
|
| 1975 |
Birdsall B, Birdsall NJM, Feeney J, Thornton J. A nuclear magnetic resonance investigation of the conformation of nicotinamide mononucleotide in aqueous solution. Journal of the American Chemical Society. 97: 2845-2850. PMID 1133337 DOI: 10.1021/Ja00843A039 |
0.2 |
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| 2012 |
Orchard S, Al-Lazikani B, Bryant S, Clark D, Calder E, Dix I, Engkvist O, Forster M, Gaulton A, Gilson M, Glen R, Grigorov M, Hammond-Kosack K, Harland L, Hopkins A, ... ... Thornton J, et al. Shouldn't enantiomeric purity be included in the 'minimum information about a bioactive entity? Response from the MIABE group Nature Reviews Drug Discovery. 11: 730. DOI: 10.1038/Nrd3503-C2 |
0.199 |
|
| 1975 |
BIRDSALL B, BIRDSALL NJM, FEENEY J, THORNTON J. ChemInform Abstract: A NUCLEAR MAGNETIC RESONANCE INVESTIGATION OF THE CONFORMATION OF NICOTINAMIDE MONONUCLEOTIDE IN AQUEOUS SOLUTION Chemischer Informationsdienst. 6. DOI: 10.1002/Chin.197530087 |
0.199 |
|
| 1987 |
Thornton JM. Structural survey Nature. 328: 584-584. DOI: 10.1038/328584a0 |
0.199 |
|
| 1988 |
Thornton JM. The shape of things to come? Nature. 335: 10-11. PMID 3412450 DOI: 10.1038/335010A0 |
0.195 |
|
| 2014 |
Tremblay V, Zhang P, Chaturvedi CP, Thornton J, Brunzelle JS, Skiniotis G, Shilatifard A, Brand M, Couture JF. Molecular basis for DPY-30 association to COMPASS-like and NURF complexes. Structure (London, England : 1993). 22: 1821-30. PMID 25456412 DOI: 10.1016/J.Str.2014.10.002 |
0.19 |
|
| 2021 |
Zaru R, Onwubiko J, Ribeiro AJM, Cochrane K, Tyzack JD, Muthukrishnan V, Pravda L, Thornton JM, O'Donovan C, Velanker S, Orchard S, Leach A, Martin MJ. The Enzyme Portal: an integrative tool for enzyme information and analysis. The Febs Journal. PMID 34437766 DOI: 10.1111/febs.16168 |
0.185 |
|
| 1976 |
Levine BA, Mercola D, Thornton JM. Proton magnetic resonance study of troponin-C. Febs Letters. 61: 218-22. PMID 2498 DOI: 10.1016/0014-5793(76)81041-1 |
0.181 |
|
| 1990 |
Thornton JM. Antibody modelling. Tackling a loopy problem. Nature. 343: 411-2. PMID 2300188 DOI: 10.1038/343411A0 |
0.175 |
|
| 2017 |
Thornton JM, Valencia A, Schwede T. Anna Tramontano 1957-2017. Nature Structural & Molecular Biology. 24: 431-432. PMID 28471426 DOI: 10.1038/Nsmb.3410 |
0.155 |
|
| 2020 |
Ivanov DK, Bostelmann G, Lan-Leung B, Williams J, Partridge L, Escott-Price V, Thornton JM. A novel computational approach for predicting complex phenotypes in Drosophila (starvation-sensitive and sterile) by deriving their gene expression signatures from public data. Plos One. 15: e0240824. PMID 33104720 DOI: 10.1371/journal.pone.0240824 |
0.153 |
|
| 2023 |
Mishra M, Barck L, Moreno P, Heger G, Song Y, Thornton JM, Papatheodorou I. SelectBCM tool: a batch evaluation framework to select the most appropriate batch-correction methods for bulk transcriptome analysis. Nar Genomics and Bioinformatics. 5: lqad014. PMID 36879900 DOI: 10.1093/nargab/lqad014 |
0.15 |
|
| 2022 |
Gromiha MM, Orengo C, Sowdhamini R, Thornton J. Srinivasan (1962-2021) in Bioinformatics and beyond. Bioinformatics (Oxford, England). PMID 35134112 DOI: 10.1093/bioinformatics/btac054 |
0.145 |
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