Year |
Citation |
Score |
2020 |
Holliday GL, Brown SD, Mischel D, Polacco BJ, Babbitt PC. A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function. Database : the Journal of Biological Databases and Curation. 2020. PMID 32449511 DOI: 10.1093/Database/Baaa034 |
0.528 |
|
2019 |
Ribeiro AJM, Tyzack JD, Borkakoti N, Holliday GL, Thornton JM. A global analysis of function and conservation of catalytic residues in enzymes. The Journal of Biological Chemistry. PMID 31796628 DOI: 10.1074/Jbc.Rev119.006289 |
0.744 |
|
2018 |
Holliday GL, Akiva E, Meng EC, Brown SD, Calhoun S, Pieper U, Sali A, Booker SJ, Babbitt PC. Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain. Methods in Enzymology. 606: 1-71. PMID 30097089 DOI: 10.1016/Bs.Mie.2018.06.004 |
0.424 |
|
2017 |
Davidson R, Baas BJ, Akiva E, Holliday GL, Polacco BJ, LeVieux JA, Pullara CR, Zhang YJ, Whitman CP, Babbitt PC. A global view of structure-function relationships in the tautomerase superfamily. The Journal of Biological Chemistry. PMID 29184004 DOI: 10.1074/Jbc.M117.815340 |
0.387 |
|
2017 |
Ribeiro AJM, Holliday GL, Furnham N, Tyzack JD, Ferris K, Thornton JM. Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. Nucleic Acids Research. PMID 29106569 DOI: 10.1093/Nar/Gkx1012 |
0.71 |
|
2017 |
Holliday GL, Brown SD, Akiva E, Mischel D, Hicks MA, Morris JH, Huang CC, Meng EC, Pegg SC, Ferrin TE, Babbitt PC. Biocuration in the structure-function linkage database: the anatomy of a superfamily. Database : the Journal of Biological Databases and Curation. 2017. PMID 28365730 DOI: 10.1093/Database/Bax006 |
0.398 |
|
2017 |
Holliday GL, Davidson R, Akiva E, Babbitt PC. Evaluating Functional Annotations of Enzymes Using the Gene Ontology. Methods in Molecular Biology (Clifton, N.J.). 1446: 111-132. PMID 27812939 DOI: 10.1007/978-1-4939-3743-1_9 |
0.345 |
|
2016 |
Rahman SA, Torrance G, Baldacci L, Martínez Cuesta S, Fenninger F, Gopal N, Choudhary S, May JW, Holliday GL, Steinbeck C, Thornton JM. Reaction Decoder Tool (RDT): extracting features from chemical reactions. Bioinformatics (Oxford, England). PMID 27153692 DOI: 10.1093/Bioinformatics/Btw096 |
0.645 |
|
2014 |
Holliday GL, Rahman SA, Furnham N, Thornton JM. Exploring the biological and chemical complexity of the ligases. Journal of Molecular Biology. 426: 2098-111. PMID 24657765 DOI: 10.1016/J.Jmb.2014.03.008 |
0.694 |
|
2014 |
Rahman SA, Cuesta SM, Furnham N, Holliday GL, Thornton JM. EC-BLAST: a tool to automatically search and compare enzyme reactions. Nature Methods. 11: 171-4. PMID 24412978 DOI: 10.1038/Nmeth.2803 |
0.757 |
|
2014 |
Furnham N, Holliday GL, de Beer TA, Jacobsen JO, Pearson WR, Thornton JM. The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. Nucleic Acids Research. 42: D485-9. PMID 24319146 DOI: 10.1093/Nar/Gkt1243 |
0.731 |
|
2014 |
Akiva E, Brown S, Almonacid DE, Barber AE, Custer AF, Hicks MA, Huang CC, Lauck F, Mashiyama ST, Meng EC, Mischel D, Morris JH, Ojha S, Schnoes AM, Stryke D, ... ... Holliday GL, et al. The Structure-Function Linkage Database. Nucleic Acids Research. 42: D521-30. PMID 24271399 DOI: 10.1093/Nar/Gkt1130 |
0.755 |
|
2013 |
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, et al. The EBI enzyme portal. Nucleic Acids Research. 41: D773-80. PMID 23175605 DOI: 10.1093/Nar/Gks1112 |
0.718 |
|
2012 |
Furnham N, Sillitoe I, Holliday GL, Cuff AL, Laskowski RA, Orengo CA, Thornton JM. Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies. Plos Computational Biology. 8: e1002403. PMID 22396634 DOI: 10.1371/Journal.Pcbi.1002403 |
0.742 |
|
2012 |
Holliday GL, Andreini C, Fischer JD, Rahman SA, Almonacid DE, Williams ST, Pearson WR. MACiE: exploring the diversity of biochemical reactions. Nucleic Acids Research. 40: D783-9. PMID 22058127 DOI: 10.1093/Nar/Gkr799 |
0.81 |
|
2012 |
Furnham N, Sillitoe I, Holliday GL, Cuff AL, Rahman SA, Laskowski RA, Orengo CA, Thornton JM. FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. Nucleic Acids Research. 40: D776-82. PMID 22006843 DOI: 10.1093/Nar/Gkr852 |
0.716 |
|
2011 |
Holliday GL, Fischer JD, Mitchell JB, Thornton JM. Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis. The Febs Journal. 278: 3835-45. PMID 21605342 DOI: 10.1111/J.1742-4658.2011.08190.X |
0.752 |
|
2010 |
Fischer JD, Holliday GL, Rahman SA, Thornton JM. The structures and physicochemical properties of organic cofactors in biocatalysis. Journal of Molecular Biology. 403: 803-24. PMID 20850456 DOI: 10.1016/J.Jmb.2010.09.018 |
0.654 |
|
2010 |
Fischer JD, Holliday GL, Thornton JM. The CoFactor database: organic cofactors in enzyme catalysis. Bioinformatics (Oxford, England). 26: 2496-7. PMID 20679331 DOI: 10.1093/Bioinformatics/Btq442 |
0.736 |
|
2009 |
Rahman SA, Bashton M, Holliday GL, Schrader R, Thornton JM. Small Molecule Subgraph Detector (SMSD) toolkit. Journal of Cheminformatics. 1: 12. PMID 20298518 DOI: 10.1186/1758-2946-1-12 |
0.561 |
|
2009 |
Holliday GL, Mitchell JB, Thornton JM. Understanding the functional roles of amino acid residues in enzyme catalysis. Journal of Molecular Biology. 390: 560-77. PMID 19447117 DOI: 10.1016/J.Jmb.2009.05.015 |
0.781 |
|
2009 |
Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM. Metal-MACiE: a database of metals involved in biological catalysis. Bioinformatics (Oxford, England). 25: 2088-9. PMID 19369503 DOI: 10.1093/Bioinformatics/Btp256 |
0.594 |
|
2008 |
Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM. Metal ions in biological catalysis: from enzyme databases to general principles. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 13: 1205-18. PMID 18604568 DOI: 10.1007/S00775-008-0404-5 |
0.594 |
|
2007 |
Holliday GL, Thornton JM, Marquet A, Smith AG, Rébeillé F, Mendel R, Schubert HL, Lawrence AD, Warren MJ. Evolution of enzymes and pathways for the biosynthesis of cofactors. Natural Product Reports. 24: 972-87. PMID 17898893 DOI: 10.1039/B703107F |
0.652 |
|
2007 |
Holliday GL, Almonacid DE, Mitchell JB, Thornton JM. The chemistry of protein catalysis. Journal of Molecular Biology. 372: 1261-77. PMID 17727879 DOI: 10.1016/J.Jmb.2007.07.034 |
0.827 |
|
2007 |
Torrance JW, Holliday GL, Mitchell JB, Thornton JM. The geometry of interactions between catalytic residues and their substrates. Journal of Molecular Biology. 369: 1140-52. PMID 17466330 DOI: 10.1016/J.Jmb.2007.03.055 |
0.745 |
|
2007 |
O'Boyle NM, Holliday GL, Almonacid DE, Mitchell JB. Using reaction mechanism to measure enzyme similarity. Journal of Molecular Biology. 368: 1484-99. PMID 17400244 DOI: 10.1016/j.jmb.2007.02.065 |
0.79 |
|
2007 |
Holliday GL, Almonacid DE, Bartlett GJ, O'Boyle NM, Torrance JW, Murray-Rust P, Mitchell JB, Thornton JM. MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. Nucleic Acids Research. 35: D515-20. PMID 17082206 DOI: 10.1093/Nar/Gkl774 |
0.786 |
|
2006 |
Holliday GL, Murray-Rust P, Rzepa HS. Chemical markup, XML, and the world wide web. 6. CMLReact, an XML vocabulary for chemical reactions. Journal of Chemical Information and Modeling. 46: 145-57. PMID 16426051 DOI: 10.1021/Ci0502698 |
0.335 |
|
2005 |
Holliday GL, Bartlett GJ, Almonacid DE, O'Boyle NM, Murray-Rust P, Thornton JM, Mitchell JB. MACiE: a database of enzyme reaction mechanisms. Bioinformatics (Oxford, England). 21: 4315-6. PMID 16188925 DOI: 10.1093/Bioinformatics/Bti693 |
0.792 |
|
2004 |
Holliday GL, Mitchell JBO, Murray-Rust P. CMLSnap: Animated reaction mechanisms Internet Journal of Chemistry. 7. |
0.354 |
|
Low-probability matches (unlikely to be authored by this person) |
2016 |
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Research. PMID 27899635 DOI: 10.1093/Nar/Gkw1107 |
0.239 |
|
2015 |
Betz JN, Boswell NW, Fugate CJ, Holliday GL, Akiva E, Scott AG, Babbitt PC, Peters JW, Shepard EM, Broderick JB. [FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis. Biochemistry. 54: 1807-18. PMID 25654171 DOI: 10.1021/Bi501205E |
0.204 |
|
2017 |
Holliday GL, Brown SD, Akiva E, Mischel D, Hicks MA, Morris JH, Huang CC, Meng EC, Pegg SC, Ferrin TE, Babbitt PC. Biocuration in the structure-function linkage database: the anatomy of a superfamily. Database : the Journal of Biological Databases and Curation. 2017. PMID 28605775 DOI: 10.1093/database/bax045 |
0.203 |
|
2015 |
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, et al. Key challenges for the creation and maintenance of specialist protein resources. Proteins. 83: 1005-13. PMID 25820941 DOI: 10.1002/Prot.24803 |
0.168 |
|
2015 |
Bastian FB, Chibucos MC, Gaudet P, Giglio M, Holliday GL, Huang H, Lewis SE, Niknejad A, Orchard S, Poux S, Skunca N, Robinson-Rechavi M. The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. Database : the Journal of Biological Databases and Curation. 2015: bav043. PMID 25957950 DOI: 10.1093/Database/Bav043 |
0.164 |
|
2009 |
Holliday GH. Comments regarding the USEPA proposed class VI well rule Spe Americas E and P Environmental and Safety Conference 2009. 201-208. |
0.101 |
|
2015 |
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, et al. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database : the Journal of Biological Databases and Curation. 2015: bav063. PMID 26284514 DOI: 10.1093/Database/Bav063 |
0.093 |
|
2004 |
Holliday G. How to obstruct divistiture of clean properties Proceedings - Spe Annual Technical Conference and Exhibition. 15-17. |
0.09 |
|
2001 |
Clarke ML, Holliday GL, Slawin AMZ, Derek Woollins J. First examples of M-Se-P-N-N heterocycles Inorganic Chemistry Communications. 4: 115-118. DOI: 10.1016/S1387-7003(00)00217-3 |
0.063 |
|
2002 |
Clarke ML, Holliday GL, Slawin AMZ, Woollins JD. Highly electron rich alkyl- and dialkyl-N-pyrrolidinyl phosphines: An evaluation of their electronic and structural properties Journal of the Chemical Society, Dalton Transactions. 1093-1103. |
0.06 |
|
2014 |
Holliday GM, Lederman JS, Lederman NG. “Wow! Look at That!”: Discourse as a Means to Improve Teachers’ Science Content Learning in Informal Science Institutions Journal of Science Teacher Education. 25: 935-952. DOI: 10.1007/S10972-014-9409-9 |
0.058 |
|
2006 |
Beaujean AA, Knoop A, Holliday G. Does chronometry have a place in assessing math disorders? Learning Disability Quarterly. 29: 32-38. DOI: 10.2307/30035530 |
0.053 |
|
1991 |
Holliday GH. Environmental compliance assessment review . 689-697. |
0.042 |
|
2000 |
Deuel LE, Holliday GH. Observed Contaminant Migration from an Instrumented Reserve Pit Proceedings of the International Oil and Gas Conference and Exhibition in China, Iogcec. 229-238. |
0.036 |
|
1984 |
Summers CF, Geraghty S, Holliday GC, Bell REB. WELLSITE USE OF LUMINESCENCE FINGERPRINTING TO DIFFERENTIATE OIL-BASE DRILLING FLUID AND NATIVE HYDROCARBONS Society of Petroleum Engineers of Aime, (Paper) Spe. 391-396. |
0.035 |
|
2002 |
Sparks RL, Holliday GH. Ageing Facilities Present a Potential Environmental Threat Proceedings - Spe Annual Technical Conference and Exhibition. 577-580. |
0.035 |
|
1998 |
Deuel LE, Holliday GH. Geochemical partitioning of metals in spent drilling fluid solids Journal of Energy Resources Technology, Transactions of the Asme. 120: 208-214. |
0.032 |
|
2001 |
Stebbins MS, Holliday G, Stormont M. Characteristics and educational support needs of underrepresented gifted adolescents Psychology in the Schools. 38: 413-423. DOI: 10.1002/Pits.1030 |
0.031 |
|
1990 |
Holliday GH, Deuel LE. Statistical review of API and EPA sampling and analysis of oil and gas field wastes Proceedings - Spe Annual Technical Conference and Exhibition. 925-935. |
0.031 |
|
2001 |
Holliday GW. Pharmacy enhanced by museum [16] Pharmaceutical Journal. 267: 680. |
0.031 |
|
2007 |
Holliday GH. A need for converting produced waters to useable waters Spe E and P Environmental and Safety Conference 2007: Delivering Superior Environmental and Safety Performance, Proceedings. 33-37. |
0.029 |
|
1990 |
Deuel LE, Holliday GH. Reserve pit drilling wastes - barium and other metal distributions of oil and gas field wastes Proceedings - Spe Annual Technical Conference and Exhibition. 937-941. |
0.027 |
|
2009 |
Holliday GH. Interpreting the hazardous air pollutants area source rule Spe Americas E and P Environmental and Safety Conference 2009. 11-18. |
0.024 |
|
2007 |
Holliday G, Statler M, Flanders M. Developing Practically Wise Leaders Through Serious Play Consulting Psychology Journal. 59: 126-134. DOI: 10.1037/1065-9293.59.2.126 |
0.023 |
|
2003 |
Reys R, Reys B, Lapan R, Holliday G, Wasman D. Assessing the impact of standards-based middle grades mathematics curriculum materials on student achievement Journal For Research in Mathematics Education. 34: 74-95. |
0.022 |
|
2005 |
McGlaughlin SM, Knoop AJ, Holliday GA. Differentiating students with mathematics difficulty in college: Mathematics disabilities vs. no diagnosis Learning Disability Quarterly. 28: 223-232. DOI: 10.2307/1593660 |
0.02 |
|
2007 |
Holliday GH. Spill prevention, control, and countermeasure plan rule Spe E and P Environmental and Safety Conference 2007: Delivering Superior Environmental and Safety Performance, Proceedings. 142-146. |
0.02 |
|
2003 |
Deuel LE, Holliday GH. Remediation of Salt-Impacted Soil and Waste Proceedings - Spe Production Operations Symposium. 657-660. |
0.019 |
|
1987 |
Holliday GS, Singh S. Fluctuations in intracavity second harmonic generation Optics Communications. 62: 289-294. DOI: 10.1016/0030-4018(87)90174-X |
0.017 |
|
1991 |
Holliday GH. Preacquisition/predivestiture environmental auditing Proceedings - Spe Annual Technical Conference and Exhibition. 317-324. |
0.016 |
|
2008 |
Holliday GH. Earth's climate change Air and Waste Management Association - 27th Annual International Conference On Thermal Treatment Technologies 2008. 1: 15-22. |
0.015 |
|
1992 |
Qu Y, Xiao M, Holliday GS, Singh S, Kimble HJ. Enhancement of photon antibunching by passive interferometry. Physical Review. A. 45: 4932-4943. PMID 9907576 DOI: 10.1103/Physreva.45.4932 |
0.014 |
|
2002 |
Deuel LE, Holliday GH. Oxygen consumption as a measure of oil impacted soil treatability American Society of Mechanical Engineers, Petroleum Division (Publication) Pd. 1: 375-381. DOI: 10.1115/ETCE2002/EE-29136 |
0.013 |
|
2003 |
Deuel LE, Holliday GH. Hydrocarbon Impacted Soil and Waste Remediation Spe/Epa Exploration and Production Environmental Conference. 165-169. |
0.012 |
|
1993 |
Holliday GH, Deuel LE. Determining total petroleum hydrocarbons in soil Proceedings - Spe Annual Technical Conference and Exhibition. 231-236. |
0.012 |
|
2005 |
Deuel LE, Holliday GH. Evolution of oil and gas waste/soil remediation regulations Energy Conversion and Resources 2005. 2005: 61-67. DOI: 10.1115/IMECE2005-80460 |
0.01 |
|
2005 |
Smith DD, Holliday GH. API/SC-PCO Southern California 1978 oil spill test program 2005 International Oil Spill Conference, Iosc 2005. 329. |
0.01 |
|
2001 |
Deuel LE, Holliday GH. Soil moisture analyses to locate shallow ground water: A solution to a vexing problem Proceedings of the Engineering Technology Conference On Energy. 205-210. |
0.01 |
|
2001 |
Deuel LE, Holliday GH. Lime treatment of oily saline drilling wastes Spe - Epa Exploration and Production Environmental Conference Proceedings. |
0.01 |
|
1999 |
Holliday GA, Koller JR, Thomas CD. Post-high school outcomes of high IQ adults with learning disabilities Journal For the Education of the Gifted. 22: 266-281. |
0.01 |
|
1998 |
Dunham MD, Holliday GA, Douget RM, Koller JR, Presberry R, Wooderson S. Vocational rehabilitation outcomes of African American adults with specific learning disabilities Journal of Rehabilitation. 64: 36-41. |
0.01 |
|
1996 |
Holliday GA, Koller JR, Kunce JT. Personality attributes of high IQ/high achieving gifted adolescents: Implications of the personal styles model Journal For the Education of the Gifted. 20: 84-102. |
0.01 |
|
1992 |
Holliday GH. SARA Sections 311-312 compliance: Is it worth the cost? Proceedings - Spe Annual Technical Conference and Exhibition. 771-778. |
0.01 |
|
1991 |
Holliday G, Strike PW, Masterton RG. Perineal cleansing and midstream urine specimens in ambulatory women. The Journal of Hospital Infection. 18: 71-5. PMID 1679076 DOI: 10.1016/0195-6701(91)90096-Q |
0.01 |
|
1990 |
Holliday G. Highways investment needs in the North West. A county view Highways and Transportation. 37: 22-25. |
0.01 |
|
Hide low-probability matches. |